Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.540 Acer truncatum HOM05D000059 ORTHO05D037949 4.4e-55 217.6 102 100.0
Sabra15G0148500 Salix brachista HOM05D000059 ORTHO05D005093 5.5e-26 120.9 69 78.3
Haze_13773 Corylus avellana HOM05D000059 ORTHO05D005093 2.8e-25 118.6 69 78.3
Nn6g34279 Nelumbo nucifera HOM05D000059 ORTHO05D005093 1.8e-24 115.9 66 80.3
CiPaw.04G068500 Carya illinoinensis HOM05D000059 ORTHO05D005093 3.0e-24 115.2 66 78.8
Potri.015G136900 Populus trichocarpa HOM05D000059 ORTHO05D005093 3.0e-24 115.2 64 81.2
Dinv35168 Davidia involucrata HOM05D000059 ORTHO05D037949 1.2e-23 113.2 77 71.4
Ciclev10004741m.g Citrus clementina HOM05D000059 ORTHO05D005093 1.5e-23 112.8 65 76.9
MD07G1262500 Malus domestica HOM05D000059 ORTHO05D005093 2.0e-23 112.5 66 75.8
MD01G1195700 Malus domestica HOM05D000059 ORTHO05D005093 2.6e-23 112.1 66 77.3
Manes.06G142800 Manihot esculenta HOM05D000059 ORTHO05D005093 2.6e-23 112.1 66 75.8
Gohir.D12G262100 Gossypium hirsutum HOM05D000059 ORTHO05D005093 1.7e-22 109.4 64 75.0
Gorai.008G280900 Gossypium raimondii HOM05D000059 ORTHO05D005093 1.7e-22 109.4 64 75.0
Potri.012G134600 Populus trichocarpa HOM05D000059 ORTHO05D005093 1.7e-22 109.4 66 72.7
QL09p015451 Quercus lobata HOM05D000059 ORTHO05D005093 2.2e-22 109.0 66 72.7
Gohir.A12G261200 Gossypium hirsutum HOM05D000059 ORTHO05D005093 3.7e-22 108.2 64 75.0
Thecc.03G169400 Theobroma cacao HOM05D000059 ORTHO05D005093 4.9e-22 107.8 64 73.4
Actinidia32906 Actinidia chinensis HOM05D000059 ORTHO05D005093 6.3e-22 107.5 66 72.7
Sabra12G0101200 Salix brachista HOM05D000059 ORTHO05D005093 6.3e-22 107.5 68 69.1
COL.COLO4_14250 Corchorus olitorius HOM05D000059 ORTHO05D005093 8.3e-22 107.1 66 71.2
Duzib084G0809 Durio zibethinus HOM05D000059 ORTHO05D005093 8.3e-22 107.1 64 73.4
Dinv28496 Davidia involucrata HOM05D000059 ORTHO05D005093 1.8e-21 105.9 66 74.2
FAN01G2691 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.8e-21 105.9 83 60.2
Hma1.2p1_0099F.1_g048640 Hydrangea macrophylla HOM05D000059 ORTHO05D005093 1.8e-21 105.9 66 71.2
Prupe.2G289000 Prunus persica HOM05D000059 ORTHO05D005093 1.8e-21 105.9 66 69.7
Nitab4.5_0008764g0020 Nicotiana tabacum HOM05D000059 ORTHO05D005093 2.4e-21 105.5 66 69.7
Duzib205G1640 Durio zibethinus HOM05D000059 ORTHO05D005093 3.1e-21 105.1 64 70.3
CSS0048870 Camellia sinensis var. sinensis HOM05D000059 ORTHO05D005093 9.2e-21 103.6 66 68.2
RcHm_v2.0_Chr1g0376571 Rosa chinensis HOM05D000059 ORTHO05D005093 9.2e-21 103.6 66 69.7
TAR375G0316 Trochodendron aralioides HOM05D000059 ORTHO05D005093 9.2e-21 103.6 66 74.2
FAN03G1635 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.6e-20 102.8 83 59.0
FAN10G2932 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.6e-20 102.8 71 64.8
Manes.14G030000 Manihot esculenta HOM05D000059 ORTHO05D005093 1.6e-20 102.8 66 65.2
Glyma.16G199400 Glycine max HOM05D000059 ORTHO05D005093 3.5e-20 101.7 69 72.5
CAN.G548.24 Capsicum annuum HOM05D000059 ORTHO05D005093 4.5e-20 101.3 66 69.7
Lj1C990G2 Lonicera japonica HOM05D000059 ORTHO05D005093 4.5e-20 101.3 66 68.2
AUR62016041 Chenopodium quinoa HOM05D000059 ORTHO05D005093 5.9e-20 100.9 66 66.7
Nitab4.5_0000832g0180 Nicotiana tabacum HOM05D000059 ORTHO05D005093 1.0e-19 100.1 66 66.7
Hund04696 Selenicereus undatus HOM05D000059 ORTHO05D005093 1.0e-19 100.1 70 64.3
AUR62021247 Chenopodium quinoa HOM05D000059 ORTHO05D005093 1.3e-19 99.8 66 65.2
FAN06G1461 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.3e-19 99.8 83 56.6
Phvul.004G122500 Phaseolus vulgaris HOM05D000059 ORTHO05D005093 1.3e-19 99.8 66 69.7
VMungo0464G0288 Vigna mungo HOM05D000059 ORTHO05D005093 1.3e-19 99.8 69 69.6
CSS0012307 Camellia sinensis var. sinensis HOM05D000059 ORTHO05D005093 1.7e-19 99.4 66 65.2
CSS0015697 Camellia sinensis var. sinensis HOM05D000059 ORTHO05D005093 1.7e-19 99.4 66 65.2
FAN03G3394 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.7e-19 99.4 83 57.8
ECA238G1876 Erigeron canadensis HOM05D000059 ORTHO05D005093 2.3e-19 99.0 68 69.1
Eucgr.K00214 Eucalyptus grandis HOM05D000059 ORTHO05D005093 2.3e-19 99.0 66 71.2
Nn1g01327 Nelumbo nucifera HOM05D000059 ORTHO05D005093 3.8e-19 98.2 60 73.3
Prupe.5G089500 Prunus persica HOM05D000059 ORTHO05D005093 3.8e-19 98.2 66 62.1
TPR.G17404 Trifolium pratense HOM05D000059 ORTHO05D005093 6.6e-19 97.4 66 72.7
Actinidia34072 Actinidia chinensis HOM05D000059 ORTHO05D005093 8.6e-19 97.1 66 68.2
Lj2g0024510 Lotus japonicus HOM05D000059 ORTHO05D005093 1.5e-18 96.3 69 68.1
PGSC0003DMG400014261 Solanum tuberosum HOM05D000059 ORTHO05D005093 1.5e-18 96.3 66 66.7
arahy.Tifrunner.gnm1.ann1.C57X19 Arachis hypogaea HOM05D000059 ORTHO05D005093 1.9e-18 95.9 68 70.6
MD04G1068700 Malus domestica HOM05D000059 ORTHO05D005093 1.9e-18 95.9 66 62.1
Psat6g201480 Pisum sativum HOM05D000059 ORTHO05D005093 1.9e-18 95.9 66 66.7
Sp1g11180 Schrenkiella parvula HOM05D000059 ORTHO05D005093 1.9e-18 95.9 67 64.2
AL1G23930 Arabidopsis lyrata HOM05D000059 ORTHO05D005093 2.5e-18 95.5 67 64.2
AT1G12580 Arabidopsis thaliana HOM05D000059 ORTHO05D005093 2.5e-18 95.5 67 64.2
EL10Ac3g05679 Beta vulgaris HOM05D000059 ORTHO05D005093 2.5e-18 95.5 66 62.1
Carub.0001s1227 Capsella rubella HOM05D000059 ORTHO05D005093 2.5e-18 95.5 67 64.2
Cpa.g.sc29.10 Carica papaya HOM05D000059 ORTHO05D005093 2.5e-18 95.5 66 63.6
Thhalv10007365m.g Eutrema salsugineum HOM05D000059 ORTHO05D005093 2.5e-18 95.5 67 64.2
FvH4_7g28910 Fragaria vesca HOM05D000059 ORTHO05D005093 2.5e-18 95.5 66 65.2
MBI04_g40841_MAGBIO Magnolia biondii HOM05D000059 ORTHO05D005093 2.5e-18 95.5 66 69.7
Rhsim03G0176100 Rhododendron simsii HOM05D000059 ORTHO05D005093 2.5e-18 95.5 66 65.2
Sc07g0009520 Simmondsia chinensis HOM05D000059 ORTHO05D005093 2.5e-18 95.5 77 57.1
Solyc03g026340.4 Solanum lycopersicum HOM05D000059 ORTHO05D005093 2.5e-18 95.5 66 65.2
Sopen03g005230 Solanum pennellii HOM05D000059 ORTHO05D005093 2.5e-18 95.5 66 65.2
Peaxi162Scf00648g00314 Petunia axillaris HOM05D000059 ORTHO05D005093 4.3e-18 94.7 67 67.2
arahy.Tifrunner.gnm1.ann1.A8HT8J Arachis hypogaea HOM05D000059 ORTHO05D005093 5.6e-18 94.4 68 69.1
Ca_10802_v3 Cicer arietinum L. HOM05D000059 ORTHO05D005093 5.6e-18 94.4 64 70.3
Ciclev10024228m.g Citrus clementina HOM05D000059 ORTHO05D005093 7.3e-18 94.0 66 66.7
Lalb_Chr06g0160951 Lupinus albus HOM05D000059 ORTHO05D005093 7.3e-18 94.0 66 65.2
PSO782G3624 Papaver somniferum HOM05D000059 ORTHO05D005093 7.3e-18 94.0 66 60.6
Lsat_1_v5_gn_2_130620 Lactuca sativa HOM05D000059 ORTHO05D005093 9.5e-18 93.6 68 66.2
CARHR012860 Cardamine hirsuta HOM05D000059 ORTHO05D005093 1.2e-17 93.2 67 62.7
Dinv39016 Davidia involucrata HOM05D000059 ORTHO05D005093 1.2e-17 93.2 66 59.1
Medtr1g101630 Medicago truncatula HOM05D000059 ORTHO05D005093 1.2e-17 93.2 66 69.7
PGR142G1012 Punica granatum HOM05D000059 ORTHO05D005093 1.6e-17 92.8 66 65.2
Sc13g0008370 Simmondsia chinensis HOM05D000059 ORTHO05D005093 1.6e-17 92.8 66 66.7
vmacro06749 Vaccinium macrocarpon HOM05D000059 ORTHO05D005093 1.6e-17 92.8 66 63.6
Lalb_Chr01g0009091 Lupinus albus HOM05D000059 ORTHO05D005093 2.1e-17 92.4 66 69.7
COL.COLO4_05279 Corchorus olitorius HOM05D000059 ORTHO05D005093 2.8e-17 92.0 67 62.7
PSO478G0347 Papaver somniferum HOM05D000059 ORTHO05D005093 2.8e-17 92.0 66 59.1
Thecc.03G270500 Theobroma cacao HOM05D000059 ORTHO05D005093 2.8e-17 92.0 66 62.1
TWI23G0420 Tripterygium wilfordii HOM05D000059 ORTHO05D005093 2.8e-17 92.0 66 62.1
BcaB03g13180 Brassica carinata HOM05D000059 ORTHO05D005093 3.6e-17 91.7 67 61.2
Aqoxy7G00470 Aquilegia oxysepala HOM05D000059 ORTHO05D005093 4.7e-17 91.3 66 60.6
TWI81G0452 Tripterygium wilfordii HOM05D000059 ORTHO05D005093 4.7e-17 91.3 66 59.1
CANSAT21G1501 Cannabis sativa HOM05D000059 ORTHO05D005093 6.1e-17 90.9 66 60.6
HanXRQChr07g0206801 Helianthus annuus HOM05D000059 ORTHO05D005093 6.1e-17 90.9 66 63.6
Cc02_g03470 Coffea canephora HOM05D000059 ORTHO05D005093 8.0e-17 90.5 66 65.2
Manes.01G068100 Manihot esculenta HOM05D000059 ORTHO05D005093 8.0e-17 90.5 66 59.1
HanXRQChr14g0461941 Helianthus annuus HOM05D000059 ORTHO05D005093 1.0e-16 90.1 66 63.6
Lj2A197G62 Lonicera japonica HOM05D000059 ORTHO05D005093 1.0e-16 90.1 66 60.6
LjContig00238g0022959 Lotus japonicus HOM05D000059 ORTHO05D005093 1.0e-16 90.1 66 71.2
LjContig00239g0005020 Lotus japonicus HOM05D000059 ORTHO05D005093 1.0e-16 90.1 66 71.2
A08p32760 Brassica napus HOM05D000059 ORTHO05D005093 1.4e-16 89.7 67 61.2
BraA08t35199Z Brassica rapa HOM05D000059 ORTHO05D005093 1.4e-16 89.7 67 61.2
Potri.003G120800 Populus trichocarpa HOM05D000059 ORTHO05D005093 1.4e-16 89.7 66 57.6
SGA_v2.0_scaffold10G05391 Striga asiatica HOM05D000059 ORTHO05D005093 1.4e-16 89.7 66 63.6
BcaB08g34263 Brassica carinata HOM05D000059 ORTHO05D005093 1.8e-16 89.4 67 62.7
A09p63760 Brassica napus HOM05D000059 ORTHO05D005093 1.8e-16 89.4 67 61.2
C08p47260 Brassica napus HOM05D000059 ORTHO05D005093 1.8e-16 89.4 67 61.2
GSVIVG01019868001 Vitis vinifera HOM05D000059 ORTHO05D005093 2.3e-16 89.0 66 60.6
Aa31LG1G2070 Aethionema arabicum HOM05D000059 ORTHO05D005093 3.0e-16 88.6 49 81.6
Lalb_Chr19g0131091 Lupinus albus HOM05D000059 ORTHO05D005093 3.0e-16 88.6 66 65.2
THA.LOC104825260 Tarenaya hassleriana HOM05D000059 ORTHO05D005093 3.0e-16 88.6 67 59.7
BraA09t41724Z Brassica rapa HOM05D000059 ORTHO05D005093 4.0e-16 88.2 67 59.7
DCAR_005676 Daucus carota HOM05D000059 ORTHO05D005093 4.0e-16 88.2 57 64.9
FvH4_3g24430 Fragaria vesca HOM05D000059 ORTHO05D002834 4.0e-16 88.2 57 66.7
BcaC07g41691 Brassica carinata HOM05D000059 ORTHO05D005093 5.2e-16 87.8 67 59.7
BolC8t52267H Brassica oleracea HOM05D000059 ORTHO05D005093 5.2e-16 87.8 67 59.7
Gohir.D09G187500 Gossypium hirsutum HOM05D000059 ORTHO05D005093 5.2e-16 87.8 49 79.6
Gorai.006G210300 Gossypium raimondii HOM05D000059 ORTHO05D005093 5.2e-16 87.8 49 79.6
C08p15520 Brassica napus HOM05D000059 ORTHO05D005093 6.8e-16 87.4 67 59.7
BolC8t49180H Brassica oleracea HOM05D000059 ORTHO05D005093 6.8e-16 87.4 67 59.7
CDE12G0969 Ceratophyllum demersum HOM05D000059 ORTHO05D005093 8.9e-16 87.0 66 57.6
Oeu004140.1 Olea europaea HOM05D000059 ORTHO05D005093 1.2e-15 86.7 65 63.1
Ah.13g067920 Amaranthus hybridus HOM05D000059 ORTHO05D005093 1.5e-15 86.3 66 56.1
Migut.F00386 Erythranthe guttata HOM05D000059 ORTHO05D005093 2.0e-15 85.9 66 59.1
Atru.chr9.1534 Acer truncatum HOM05D000059 ORTHO05D005093 2.6e-15 85.5 66 56.1
Duzib084G0540 Durio zibethinus HOM05D000059 ORTHO05D005093 2.6e-15 85.5 63 65.1
Oeu059055.1 Olea europaea HOM05D000059 ORTHO05D005093 2.6e-15 85.5 52 63.5
PGR031G0030 Punica granatum HOM05D000059 ORTHO05D005093 3.4e-15 85.1 66 57.6
FAN08G3238 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.3e-14 83.2 67 55.2
Cc08_g13920 Coffea canephora HOM05D000059 ORTHO05D005093 1.7e-14 82.8 64 51.6
Eucgr.D01928 Eucalyptus grandis HOM05D000059 ORTHO05D005093 1.7e-14 82.8 69 58.0
Sed0027923 Sechium edule HOM05D000059 ORTHO05D005093 1.7e-14 82.8 75 52.0
ClCG01G003180 Citrullus lanatus HOM05D000059 ORTHO05D005093 3.7e-14 81.6 49 67.3
CsaV3_5G003290 Cucumis sativus L. HOM05D000059 ORTHO05D005093 3.7e-14 81.6 49 67.3
MSTRG.8772 Avicennia marina HOM05D000059 ORTHO05D005093 4.9e-14 81.3 66 57.6
MELO3C005625.2 Cucumis melo HOM05D000059 ORTHO05D005093 4.9e-14 81.3 49 67.3
Oeu030134.1 Olea europaea HOM05D000059 ORTHO05D005093 4.9e-14 81.3 65 60.0
RcHm_v2.0_Chr7g0199461 Rosa chinensis HOM05D000059 ORTHO05D005093 4.9e-14 81.3 66 53.0
MSTRG.12025 Avicennia marina HOM05D000059 ORTHO05D005093 1.8e-13 79.3 66 47.0
FvH4_5g01410 Fragaria vesca HOM05D000059 ORTHO05D005093 1.8e-13 79.3 66 53.0
FAN04G1825 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.8e-13 79.3 66 53.0
FAN18G1811 Fragaria x ananassa HOM05D000059 ORTHO05D005093 1.8e-13 79.3 66 53.0
FAN13G3096 Fragaria x ananassa HOM05D000059 ORTHO05D005093 2.4e-13 79.0 57 61.4
Sed0004396 Sechium edule HOM05D000059 ORTHO05D005093 3.2e-13 78.6 56 60.7
ATR0757G116 Amborella trichopoda HOM05D000059 ORTHO05D005093 5.4e-13 77.8 66 56.1
Sabra03G0084900 Salix brachista HOM05D000059 ORTHO05D005093 5.4e-13 77.8 46 67.4
unitig_60.g25543 Utricularia gibba HOM05D000059 ORTHO05D005093 1.6e-12 76.3 67 58.2
HPP92_008386 Vanilla planifolia HOM05D000059 ORTHO05D005093 2.7e-12 75.5 50 64.0
TAR629G2937 Trochodendron aralioides HOM05D000059 ORTHO05D005093 2.3e-11 72.4 41 78.0
SalBow6G6862 Salvia bowleyana HOM05D000059 ORTHO05D005093 3.0e-11 72.0 51 52.9
Migut.A00917 Erythranthe guttata HOM05D000059 ORTHO05D005093 9.5e-10 67.0 49 53.1
Zm00001eb269440 Zea mays HOM05D000059 ORTHO05D005093 5.2e-08 61.2 49 53.1
Actinidia14510 Actinidia chinensis HOM05D000059 ORTHO05D005093 1.5e-07 59.7 48 56.2


User provided reference genes

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