Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.445 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-53 211.5 102 100.0
Atru.chr10.949 Acer truncatum HOM05D000003 ORTHO05D000004 4.1e-21 104.8 63 81.0
Atru.chr1.3974 Acer truncatum HOM05D000003 ORTHO05D000004 7.0e-21 104.0 64 75.0
Atru.chr4.3084 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-20 103.2 64 73.4
Atru.chr2.258 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-19 100.1 63 71.4
Atru.chr1.3207 Acer truncatum HOM05D000003 ORTHO05D000004 8.6e-19 97.1 63 69.8
Atru.chr3.1819 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-18 96.7 62 66.1
Atru.chr4.1522 Acer truncatum HOM05D000003 ORTHO05D000004 4.3e-18 94.7 63 66.7
Atru.chr6.1290 Acer truncatum HOM05D000003 ORTHO05D000004 4.3e-18 94.7 63 66.7
Atru.chr8.612 Acer truncatum HOM05D000003 ORTHO05D000004 4.3e-18 94.7 63 68.3
Atru.chr7.1397 Acer truncatum HOM05D000003 ORTHO05D000004 5.6e-18 94.4 63 66.7
Atru.chr6.171 Acer truncatum HOM05D000003 ORTHO05D000004 9.5e-18 93.6 63 63.5
Atru.chr1.2846 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-17 92.8 64 64.1
Atru.chr2.2547 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-17 92.8 58 69.0
Atru.chr2.915 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-17 92.4 64 67.2
Atru.chr4.2622 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-17 92.4 64 65.6
Atru.chr3.1385 Acer truncatum HOM05D000003 ORTHO05D000004 2.8e-17 92.0 61 63.9
Atru.chr2.253 Acer truncatum HOM05D000003 ORTHO05D000004 6.1e-17 90.9 63 61.9
Atru.chr3.3476 Acer truncatum HOM05D000003 ORTHO05D000004 6.1e-17 90.9 78 55.1
Atru.chr4.2199 Acer truncatum HOM05D000003 ORTHO05D000004 6.1e-17 90.9 63 65.1
Atru.chr8.2073 Acer truncatum HOM05D000003 ORTHO05D000004 6.1e-17 90.9 62 64.5
Atru.chr3.1893 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-16 90.1 63 66.7
Atru.chr3.2342 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-16 90.1 58 69.0
Atru.chr6.307 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-16 90.1 63 61.9
Atru.chr3.1277 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-16 89.7 63 61.9
Atru.chr5.2247 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-16 89.4 64 62.5
Atru.chr2.3564 Acer truncatum HOM05D000003 ORTHO05D000004 2.3e-16 89.0 77 53.2
Atru.chr2.923 Acer truncatum HOM05D000021 ORTHO05D000010 2.3e-16 89.0 73 63.0
Atru.chr6.183 Acer truncatum HOM05D000003 ORTHO05D000004 2.3e-16 89.0 61 65.6
Atru.chr10.907 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-16 88.6 63 61.9
Atru.chr2.3028 Acer truncatum HOM05D000003 ORTHO05D000004 3.0e-16 88.6 62 64.5
Atru.chr3.1661 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-16 88.2 62 64.5
Atru.chr8.1497 Acer truncatum HOM05D000003 ORTHO05D000004 4.0e-16 88.2 59 62.7
Atru.chr2.282 Acer truncatum HOM05D000003 ORTHO05D000004 6.8e-16 87.4 63 61.9
Atru.chr4.2769 Acer truncatum HOM05D000003 ORTHO05D000004 6.8e-16 87.4 63 58.7
Atru.chr4.466 Acer truncatum HOM05D000003 ORTHO05D000004 2.6e-15 85.5 63 58.7
Atru.chr11.133 Acer truncatum HOM05D000003 ORTHO05D000004 3.4e-15 85.1 65 58.5
Atru.chr2.2565 Acer truncatum HOM05D000003 ORTHO05D000004 3.4e-15 85.1 62 64.5
Atru.chr11.644 Acer truncatum HOM05D000003 ORTHO05D000004 4.4e-15 84.7 81 49.4
Atru.chr13.1556 Acer truncatum HOM05D000003 ORTHO05D000004 4.4e-15 84.7 62 61.3
Atru.chr3.3701 Acer truncatum HOM05D000003 ORTHO05D000004 4.4e-15 84.7 64 57.8
Atru.chr6.1404 Acer truncatum HOM05D000003 ORTHO05D000004 4.4e-15 84.7 58 65.5
Atru.chr6.713 Acer truncatum HOM05D000003 ORTHO05D000004 5.8e-15 84.3 58 62.1
Atru.chr1.2408 Acer truncatum HOM05D000003 ORTHO05D000004 7.5e-15 84.0 61 59.0
Atru.chr3.1794 Acer truncatum HOM05D000003 ORTHO05D000004 7.5e-15 84.0 62 59.7
Atru.chr2.1150 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-14 82.8 63 61.9
Atru.chr6.408 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-14 82.8 58 62.1
Atru.chr7.675 Acer truncatum HOM05D000003 ORTHO05D002259 1.7e-14 82.8 82 52.4
Atru.chr1.2603 Acer truncatum HOM05D000003 ORTHO05D000004 3.7e-14 81.6 63 57.1
Atru.chr8.1740 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-14 81.3 62 53.2
Atru.chr8.961 Acer truncatum HOM05D000003 ORTHO05D000004 4.9e-14 81.3 63 55.6
Atru.chr4.2177 Acer truncatum HOM05D000003 ORTHO05D000004 6.4e-14 80.9 62 58.1
Atru.chr4.519 Acer truncatum HOM05D000003 ORTHO05D000004 8.3e-14 80.5 58 63.8
Atru.chr2.1227 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-13 80.1 63 57.1
Atru.chr2.3295 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-13 80.1 61 55.7
Atru.chr3.2239 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-13 80.1 62 56.5
Atru.chr3.2347 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-13 80.1 61 50.8
Atru.chr4.2647 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-13 80.1 54 63.0
Atru.chr4.802 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-13 80.1 58 60.3
Atru.chr1.2043 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-13 79.3 62 54.8
Atru.chr4.770 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-13 79.0 82 45.1
Atru.chr5.3362 Acer truncatum HOM05D000003 ORTHO05D000004 2.4e-13 79.0 61 55.7
Atru.chr6.162 Acer truncatum HOM05D000003 ORTHO05D000004 4.1e-13 78.2 66 56.1
Atru.chr6.1051 Acer truncatum HOM05D000003 ORTHO05D000004 7.0e-13 77.4 60 55.0
Atru.chr6.600 Acer truncatum HOM05D000003 ORTHO05D002259 9.2e-13 77.0 52 61.5
Atru.chr6.612 Acer truncatum HOM05D000003 ORTHO05D000004 9.2e-13 77.0 52 61.5
Atru.chr13.1421 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-12 76.6 61 57.4
Atru.chr2.3067 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-12 76.6 49 69.4
Atru.chr6.2137 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-12 76.6 62 53.2
Atru.chr10.514 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-12 76.3 58 60.3
Atru.chr6.101 Acer truncatum HOM05D000003 ORTHO05D000004 2.0e-12 75.9 54 61.1
Atru.chr10.726 Acer truncatum HOM05D000003 ORTHO05D000004 2.7e-12 75.5 56 55.4
Atru.chr7.700 Acer truncatum HOM05D000003 ORTHO05D000004 3.5e-12 75.1 54 63.0
Atru.chr10.988 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-11 73.6 78 46.2
Atru.chr6.158 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-11 73.2 66 53.0
Atru.chr1.3831 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-11 72.8 49 65.3
Atru.chr3.2171 Acer truncatum HOM05D000003 ORTHO05D000004 5.0e-11 71.2 48 64.6
Atru.chr1.2676 Acer truncatum HOM05D000003 ORTHO05D000004 6.6e-11 70.9 63 58.7
Atru.chr2.1981 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-10 69.3 49 57.1
Atru.chr4.38 Acer truncatum HOM05D000003 ORTHO05D000004 5.6e-10 67.8 60 55.0
Atru.chr13.1427 Acer truncatum HOM05D000003 ORTHO05D000004 1.8e-08 62.8 54 55.6
Atru.chr6.510 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-08 62.0 41 58.5
CANSAT01G3175 Cannabis sativa HOM05D000003 ORTHO05D000004 3.1e-08 62.0 62 45.2
CSS0049674 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.8e-08 60.8 54 51.9
Atru.chr8.868 Acer truncatum HOM05D000003 ORTHO05D000004 8.9e-08 60.5 43 58.1
Duzib168G0449 Durio zibethinus HOM05D000003 ORTHO05D000004 1.2e-07 60.1 77 46.8
Sed0023069 Sechium edule HOM05D000003 ORTHO05D000004 2.0e-07 59.3 62 45.2
Sopen06g002250 Solanum pennellii HOM05D000003 ORTHO05D000004 2.0e-07 59.3 61 45.9
CSS0022535 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.6e-07 58.9 63 41.3
CSS0022596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.6e-07 58.9 63 42.9
TWI31G0724 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.6e-07 58.9 67 43.3
CSS0035444 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.4e-07 58.5 63 42.9
CSS0048351 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.4e-07 58.5 60 45.0
Atru.chr2.1221 Acer truncatum HOM05D000003 ORTHO05D000004 4.4e-07 58.2 40 60.0
TWI36G1780 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 4.4e-07 58.2 59 42.4
Atru.chr8.1489 Acer truncatum HOM05D000003 ORTHO05D000004 5.8e-07 57.8 38 65.8
Actinidia24025 Actinidia chinensis HOM05D000003 ORTHO05D000004 5.8e-07 57.8 64 45.3
CSS0011287 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.8e-07 57.8 62 45.2
CANSAT11G1818 Cannabis sativa HOM05D000003 ORTHO05D000004 5.8e-07 57.8 65 46.2
Sopen11g018640 Solanum pennellii HOM05D000003 ORTHO05D000004 5.8e-07 57.8 61 44.3
CSS0035702 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 7.5e-07 57.4 63 42.9
Sed0014012 Sechium edule HOM05D000003 ORTHO05D000004 7.5e-07 57.4 61 42.6
Atru.chr1.3706 Acer truncatum HOM05D000003 ORTHO05D000004 9.8e-07 57.0 37 70.3
Aqoxy5G02498 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 9.8e-07 57.0 63 42.9
CSS0050470 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 9.8e-07 57.0 62 43.5
CANSAT56G2204 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-06 56.6 66 36.4
MD06G1023000 Malus domestica HOM05D000003 ORTHO05D000004 1.3e-06 56.6 65 41.5
CSS0007226 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.7e-06 56.2 62 45.2
CSS0009846 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.7e-06 56.2 44 52.3
CANSAT78G0730 Cannabis sativa HOM05D000003 ORTHO05D000004 1.7e-06 56.2 66 42.4
MD08G1205700 Malus domestica HOM05D000003 ORTHO05D000004 1.7e-06 56.2 65 41.5
Aa31LG7G12870 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.2e-06 55.8 65 47.7
CANSAT35G1937 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-06 55.8 65 46.2
CANSAT80G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-06 55.8 66 42.4
Aa31LG8G12510 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.9e-06 55.5 68 38.2
ClCG10G005890 Citrullus lanatus HOM05D000003 ORTHO05D000004 2.9e-06 55.5 61 45.9
Rhsim05G0174100 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.9e-06 55.5 66 42.4
RcHm_v2.0_Chr6g0249781 Rosa chinensis HOM05D000003 ORTHO05D000004 2.9e-06 55.5 65 46.2
TPR.G27496 Trifolium pratense HOM05D000003 ORTHO05D000004 2.9e-06 55.5 63 44.4
CSS0015339 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.7e-06 55.1 64 34.4
CANSAT78G1083 Cannabis sativa HOM05D000003 ORTHO05D000004 3.7e-06 55.1 66 39.4
TPR.G34429 Trifolium pratense HOM05D000003 ORTHO05D000004 3.7e-06 55.1 65 40.0
TPR.G39606 Trifolium pratense HOM05D000003 ORTHO05D000004 3.7e-06 55.1 65 40.0
CSS0006009 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.9e-06 54.7 62 41.9
CSS0015694 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 4.9e-06 54.7 61 44.3
CANSAT80G0199 Cannabis sativa HOM05D000003 ORTHO05D000004 4.9e-06 54.7 66 40.9
MELO3C022264.2 Cucumis melo HOM05D000003 ORTHO05D000004 4.9e-06 54.7 61 41.0
ECA246G2574 Erigeron canadensis HOM05D000014 ORTHO05D000093 4.9e-06 54.7 63 39.7
MBI19_g17590_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 4.9e-06 54.7 63 46.0
Rhsim05G0208700 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.9e-06 54.7 65 40.0
Atru.chr13.2286 Acer truncatum HOM05D000003 ORTHO05D000004 6.4e-06 54.3 39 56.4
Atru.chr3.1634 Acer truncatum HOM05D000003 ORTHO05D000004 6.4e-06 54.3 65 41.5
CSS0007093 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 6.4e-06 54.3 53 43.4
TWI36G1756 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 6.4e-06 54.3 59 40.7
Atru.chr3.3444 Acer truncatum HOM05D000003 ORTHO05D000004 8.3e-06 53.9 37 67.6
Aqoxy1G03267 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 8.3e-06 53.9 60 45.0
Aqoxy1G03403 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 8.3e-06 53.9 63 46.0
Aqoxy7G02447 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 8.3e-06 53.9 63 46.0
CANSAT56G2527 Cannabis sativa HOM05D000003 ORTHO05D000004 8.3e-06 53.9 81 35.8
CANSAT80G2799 Cannabis sativa HOM05D000003 ORTHO05D000004 8.3e-06 53.9 60 50.0
ClCG05G011290 Citrullus lanatus HOM05D000003 ORTHO05D000004 8.3e-06 53.9 65 43.1
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 8.3e-06 53.9 66 43.9
PSO478G1896 Papaver somniferum HOM05D000003 ORTHO05D000004 8.3e-06 53.9 60 48.3
RcHm_v2.0_Chr6g0273271 Rosa chinensis HOM05D000003 ORTHO05D000004 8.3e-06 53.9 65 46.2
SEGI_28970 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 8.3e-06 53.9 74 40.5
TPR.G35802 Trifolium pratense HOM05D000003 ORTHO05D000007 8.3e-06 53.9 60 43.3


User provided reference genes

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