Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 3.8e-93 344.7 166 100.0
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 3.9e-77 291.6 167 86.8
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 5.1e-53 211.5 165 63.6
Ciclev10027015m.g Citrus clementina HOM05D008031 ORTHO05D010063 7.3e-52 207.6 201 57.7
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 1.1e-50 203.8 165 60.0
Potri.003G073200 Populus trichocarpa HOM05D008031 ORTHO05D010063 4.2e-47 191.8 161 59.0
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 5.4e-47 191.4 165 56.4
QL05p000882 Quercus lobata HOM05D008031 ORTHO05D010063 5.6e-44 181.4 165 58.8
QL05p001111 Quercus lobata HOM05D008031 ORTHO05D010063 5.6e-44 181.4 165 58.8
COL.COLO4_30875 Corchorus olitorius HOM05D008031 ORTHO05D010063 1.6e-43 179.9 165 53.9
CiPaw.01G211000 Carya illinoinensis HOM05D008031 ORTHO05D010063 1.1e-42 177.2 169 58.0
TWI14G1127 Tripterygium wilfordii HOM05D008031 ORTHO05D010063 3.1e-42 175.6 165 55.8
CiPaw.02G130600 Carya illinoinensis HOM05D008031 ORTHO05D010063 4.5e-41 171.8 169 53.8
Hma1.2p1_0090F.1_g045750 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 7.6e-41 171.0 166 57.2
Hma1.2p1_2628F.1_g325675 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 7.6e-41 171.0 166 57.2
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.3e-40 170.2 165 52.1
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.3e-40 170.2 165 52.1
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 1.3e-40 170.2 165 52.1
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 8.4e-40 167.5 163 53.4
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 1.4e-39 166.8 169 53.8
Duzib235G0155 Durio zibethinus HOM05D008031 ORTHO05D010063 1.2e-38 163.7 137 59.9
Haze_16140 Corylus avellana HOM05D001728 ORTHO05D004321 3.9e-37 158.7 167 51.5
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 5.1e-37 158.3 171 53.8
Eucgr.J02592 Eucalyptus grandis HOM05D008031 ORTHO05D010063 3.3e-36 155.6 165 49.7
Cpa.g.sc25.199 Carica papaya HOM05D008031 ORTHO05D010063 5.6e-36 154.8 164 51.2
Cfa003457 Carpinus fangiana HOM05D008031 ORTHO05D010063 1.3e-35 153.7 166 48.2
Rhsim08G0245200 Rhododendron simsii HOM05D008031 ORTHO05D010063 4.8e-35 151.8 166 50.0
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 1.1e-34 150.6 170 53.5
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 2.6e-33 146.0 165 52.1
Oeu019510.1 Olea europaea HOM05D008031 ORTHO05D010063 3.4e-33 145.6 166 50.0
FvH4_6g35970 Fragaria vesca HOM05D008031 ORTHO05D010063 5.8e-33 144.8 163 47.2
FAN09G4453 Fragaria x ananassa HOM05D008031 ORTHO05D010063 5.8e-33 144.8 163 47.2
FAN14G4753 Fragaria x ananassa HOM05D008031 ORTHO05D010063 5.8e-33 144.8 163 47.2
Prupe.3G030600 Prunus persica HOM05D008031 ORTHO05D010063 5.8e-33 144.8 165 50.3
Peaxi162Scf00038g02327 Petunia axillaris HOM05D008031 ORTHO05D010063 4.9e-32 141.7 169 45.6
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 1.1e-31 140.6 165 49.7
PGR102G3014 Punica granatum HOM05D008031 ORTHO05D010063 3.2e-31 139.0 170 45.9
FAN02G3240 Fragaria x ananassa HOM05D008031 ORTHO05D010063 4.2e-31 138.7 163 44.2
FAN05G2192 Fragaria x ananassa HOM05D008031 ORTHO05D010063 1.2e-30 137.1 163 44.8
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 1.6e-30 136.7 168 46.4
Lj3g0013752 Lotus japonicus HOM05D008031 ORTHO05D010063 4.6e-30 135.2 169 49.7
RcHm_v2.0_Chr2g0148091 Rosa chinensis HOM05D008031 ORTHO05D010063 4.6e-30 135.2 163 44.2
CsaV3_3G031060 Cucumis sativus L. HOM05D008031 ORTHO05D010063 6.0e-30 134.8 159 50.3
ClCG07G014260 Citrullus lanatus HOM05D008031 ORTHO05D010063 1.8e-29 133.3 158 51.3
MD09G1172200 Malus domestica HOM05D008031 ORTHO05D010063 3.9e-29 132.1 158 48.1
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 5.1e-29 131.7 170 47.1
PGSC0003DMG400009151 Solanum tuberosum HOM05D008031 ORTHO05D010063 8.7e-29 131.0 170 44.7
Oeu053417.1 Olea europaea HOM05D008031 ORTHO05D010063 1.1e-28 130.6 165 47.9
MD17G1154700 Malus domestica HOM05D008031 ORTHO05D010063 2.5e-28 129.4 158 48.7
Sopen03g041440 Solanum pennellii HOM05D008031 ORTHO05D010063 3.3e-28 129.0 170 44.7
MELO3C022708.2 Cucumis melo HOM05D008031 ORTHO05D010063 4.3e-28 128.6 159 48.4
Medtr8g023390 Medicago truncatula HOM05D008031 ORTHO05D010063 4.3e-28 128.6 155 51.0
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 4.3e-28 128.6 170 47.6
Solyc03g123670.3 Solanum lycopersicum HOM05D008031 ORTHO05D010063 7.4e-28 127.9 170 44.7
VMungo0331G1222 Vigna mungo HOM05D008031 ORTHO05D010063 1.6e-27 126.7 166 45.8
Cc04_g00650 Coffea canephora HOM05D008031 ORTHO05D010063 3.7e-27 125.6 169 45.6
Sed0024761 Sechium edule HOM05D008031 ORTHO05D010063 3.7e-27 125.6 158 48.7
Migut.I01137 Erythranthe guttata HOM05D008031 ORTHO05D010063 3.1e-26 122.5 169 44.4
Nitab4.5_0006338g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 6.9e-26 121.3 174 46.0
SGA_v2.0_scaffold71G23934 Striga asiatica HOM05D008031 ORTHO05D010063 6.9e-26 121.3 168 42.9
CANSAT56G3277 Cannabis sativa HOM05D008031 ORTHO05D010063 4.5e-25 118.6 167 40.7
Aqoxy7G04192 Aquilegia oxysepala HOM05D008031 ORTHO05D010063 7.6e-25 117.9 171 43.3
TPR.G29474 Trifolium pratense HOM05D008031 ORTHO05D010063 2.9e-24 115.9 167 44.3
Dinv20378 Davidia involucrata HOM05D001728 ORTHO05D004321 3.5e-22 109.0 112 58.9
DCAR_022641 Daucus carota HOM05D008031 ORTHO05D010063 6.1e-22 108.2 172 41.9
Nitab4.5_0006966g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 1.0e-21 107.5 169 42.0
arahy.Tifrunner.gnm1.ann1.8JA41T Arachis hypogaea HOM05D008031 ORTHO05D010063 3.9e-21 105.5 166 47.6
arahy.Tifrunner.gnm1.ann1.CKB8X1 Arachis hypogaea HOM05D008031 ORTHO05D010063 6.7e-21 104.8 166 47.6
Glyma.16G014500 Glycine max HOM05D008031 ORTHO05D010063 6.7e-21 104.8 169 43.2
arahy.Tifrunner.gnm1.ann1.PVL51W Arachis hypogaea HOM05D008031 ORTHO05D010063 3.3e-20 102.4 166 48.2
Ah.08g217400 Amaranthus hybridus HOM05D008031 ORTHO05D010063 2.8e-19 99.4 179 38.0
Eucgr.I02164 Eucalyptus grandis HOM05D008031 ORTHO05D010063 2.4e-18 96.3 155 40.6
Lsat_1_v5_gn_4_90600 Lactuca sativa HOM05D008031 ORTHO05D010063 2.6e-17 92.8 154 39.0
Oeu015468.1 Olea europaea HOM05D008031 ORTHO05D010063 2.9e-16 89.4 156 40.4
Hund18631 Selenicereus undatus HOM05D008031 ORTHO05D010063 3.0e-13 79.3 171 38.0
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 3.3e-12 75.9 176 34.1
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 4.3e-12 75.5 185 31.4
SalBow6G0345 Salvia bowleyana HOM05D008031 ORTHO05D010063 5.7e-12 75.1 158 39.2
HPP92_016648 Vanilla planifolia HOM05D042795 ORTHO05D010063 5.7e-12 75.1 147 36.7
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 9.7e-12 74.3 180 29.4
MSTRG.9544 Avicennia marina HOM05D008031 ORTHO05D010063 2.8e-11 72.8 149 37.6
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 3.7e-11 72.4 191 29.8
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 6.3e-11 71.6 178 31.5
Rhsim08G0245400 Rhododendron simsii HOM05D002316 ORTHO05D002280 6.3e-11 71.6 65 52.3
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 8.2e-11 71.2 195 30.3
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 8.2e-11 71.2 199 31.7
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 1.1e-10 70.9 186 29.0
HPP92_016651 Vanilla planifolia HOM05D042795 ORTHO05D010063 1.1e-10 70.9 149 35.6
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.4e-10 70.5 184 32.6
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 1.4e-10 70.5 185 34.1
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 1.8e-10 70.1 179 31.8
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 1.8e-10 70.1 193 30.6
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.8e-10 70.1 173 34.7
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 2.4e-10 69.7 182 32.4
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 2.4e-10 69.7 195 32.3
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 5.3e-10 68.6 183 29.5
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 9.1e-10 67.8 170 34.1
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 9.1e-10 67.8 179 31.8
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 1.2e-09 67.4 190 30.5
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 1.5e-09 67.0 185 27.6
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.5e-09 67.0 185 27.6
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.5e-09 67.0 185 27.6
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 2.6e-09 66.2 176 31.2
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 3.4e-09 65.9 197 32.0
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 4.5e-09 65.5 187 30.5
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 4.5e-09 65.5 170 31.8
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 5.9e-09 65.1 174 31.6
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 7.7e-09 64.7 189 27.5
CDE05G1539 Ceratophyllum demersum HOM05D008031 ORTHO05D010063 1.0e-08 64.3 171 32.7
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 1.3e-08 63.9 191 33.5
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 1.3e-08 63.9 175 32.6
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 1.3e-08 63.9 168 26.8
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 1.7e-08 63.5 189 32.3
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 2.2e-08 63.2 187 29.9
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 2.9e-08 62.8 188 28.7
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 2.9e-08 62.8 180 29.4
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 2.9e-08 62.8 183 27.9
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 3.8e-08 62.4 193 29.5
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 3.8e-08 62.4 171 31.6
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 3.8e-08 62.4 184 33.2
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 5.0e-08 62.0 188 27.7
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 5.0e-08 62.0 189 32.3
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 5.0e-08 62.0 178 32.0
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 5.0e-08 62.0 190 28.4
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 5.0e-08 62.0 174 31.0
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 8.5e-08 61.2 188 26.1
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 8.5e-08 61.2 167 35.9
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 1.1e-07 60.8 173 28.3
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 1.1e-07 60.8 192 28.6
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 2.5e-07 59.7 176 31.8
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 3.2e-07 59.3 180 32.8
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 4.2e-07 58.9 195 28.7
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 4.2e-07 58.9 191 29.8
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 5.5e-07 58.5 194 29.4
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 9.4e-07 57.8 179 30.2
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 9.4e-07 57.8 180 29.4
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 1.2e-06 57.4 185 29.2
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 2.1e-06 56.6 181 28.2
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 2.1e-06 56.6 166 30.7
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.1e-06 56.6 184 26.1
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 2.1e-06 56.6 189 26.5
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 2.7e-06 56.2 175 29.1
AUR62008566 Chenopodium quinoa HOM05D066845 ORTHO05D044049 2.7e-06 56.2 138 29.0
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.7e-06 56.2 191 29.3
ATR0099G028 Amborella trichopoda HOM05D008031 ORTHO05D010063 3.6e-06 55.8 117 36.8
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 3.6e-06 55.8 185 28.6
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 4.7e-06 55.5 162 32.1
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 4.7e-06 55.5 188 26.6
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 6.1e-06 55.1 184 31.5
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 6.1e-06 55.1 185 26.5
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 6.1e-06 55.1 198 25.8
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 6.1e-06 55.1 180 31.1
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 7.9e-06 54.7 170 30.0
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 7.9e-06 54.7 183 31.7
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 7.9e-06 54.7 186 29.0


User provided reference genes

Program Settings