Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.4150 Acer truncatum HOM05D005764 ORTHO05D006600 1.7e-117 426.0 209 100.0
Atru.chr6.3404 Acer truncatum HOM05D005764 ORTHO05D006600 3.8e-98 361.7 194 91.8
Atru.chr6.3419 Acer truncatum HOM05D005764 ORTHO05D006600 1.0e-71 273.9 141 95.7
Atru.chr6.3407 Acer truncatum HOM05D005764 ORTHO05D006600 4.0e-71 271.9 209 71.8
Cfa014216 Carpinus fangiana HOM05D005764 ORTHO05D006600 3.1e-39 166.0 194 47.9
Haze_12617 Corylus avellana HOM05D005764 ORTHO05D006600 4.0e-39 165.6 202 46.5
Haze_12606 Corylus avellana HOM05D005764 ORTHO05D006600 9.0e-39 164.5 202 47.0
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 2.6e-38 162.9 197 48.2
Cpa.g.sc211.34 Carica papaya HOM05D005764 ORTHO05D006600 1.0e-34 151.0 197 46.7
Dinv21306 Davidia involucrata HOM05D005764 ORTHO05D006600 2.8e-32 142.9 194 43.3
Actinidia07859 Actinidia chinensis HOM05D005764 ORTHO05D006600 1.1e-31 141.0 196 41.8
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 1.2e-30 137.5 194 42.8
TAR633G1425 Trochodendron aralioides HOM05D005764 ORTHO05D006600 5.8e-30 135.2 200 39.5
Thecc.01G197100 Theobroma cacao HOM05D005764 ORTHO05D006600 7.6e-30 134.8 196 41.8
CSS0031853 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 8.4e-29 131.3 196 40.3
CSS0045653 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 2.4e-28 129.8 196 41.3
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 7.1e-28 128.3 158 44.3
vmacro12075 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 9.3e-28 127.9 193 40.4
Dinv13731 Davidia involucrata HOM05D005764 ORTHO05D006600 6.0e-27 125.2 159 42.1
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 1.1e-25 120.9 167 37.7
QL11p027136 Quercus lobata HOM05D005764 ORTHO05D006600 1.1e-25 120.9 161 41.6
Rhsim06G0177300 Rhododendron simsii HOM05D005764 ORTHO05D006600 1.1e-25 120.9 193 38.9
Sc04g0000230 Simmondsia chinensis HOM05D005764 ORTHO05D006600 1.1e-25 120.9 162 42.6
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 4.3e-25 119.0 155 44.5
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 4.3e-25 119.0 155 44.5
CSS0040489 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 5.6e-25 118.6 172 39.5
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 2.1e-24 116.7 186 37.1
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 2.8e-24 116.3 173 39.9
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 2.8e-24 116.3 195 35.9
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 3.7e-24 115.9 158 38.6
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 3.7e-24 115.9 160 40.0
SGA_v2.0_scaffold74G24732 Striga asiatica HOM05D005764 ORTHO05D006600 1.4e-23 114.0 174 40.2
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 2.4e-23 113.2 200 37.0
Ciclev10033858m.g Citrus clementina HOM05D005764 ORTHO05D006600 6.9e-23 111.7 166 37.3
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 6.9e-23 111.7 190 36.3
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.5e-22 110.5 185 34.6
AUR62034761 Chenopodium quinoa HOM05D005764 ORTHO05D006600 4.5e-22 109.0 197 35.5
AUR62041690 Chenopodium quinoa HOM05D005764 ORTHO05D006600 4.5e-22 109.0 197 35.5
FvH4_5g09340 Fragaria vesca HOM05D005764 ORTHO05D006600 5.8e-22 108.6 163 40.5
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 5.8e-22 108.6 168 38.1
AUR62009526 Chenopodium quinoa HOM05D005764 ORTHO05D006600 1.0e-21 107.8 197 35.5
PGR042G2810 Punica granatum HOM05D005764 ORTHO05D006600 1.3e-21 107.5 156 39.7
FAN18G2453 Fragaria x ananassa HOM05D005764 ORTHO05D006600 1.7e-21 107.1 163 39.9
QL04p006829 Quercus lobata HOM05D000056 ORTHO05D000019 1.7e-21 107.1 168 37.5
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 1.7e-21 107.1 168 37.5
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.7e-21 107.1 173 36.4
Aqoxy7G02956 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 2.9e-21 106.3 189 36.5
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 2.9e-21 106.3 191 33.5
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 2.9e-21 106.3 144 42.4
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 4.9e-21 105.5 172 37.8
RcHm_v2.0_Chr7g0188811 Rosa chinensis HOM05D005764 ORTHO05D006600 4.9e-21 105.5 165 38.8
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 4.9e-21 105.5 189 35.4
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 1.4e-20 104.0 166 35.5
Sed0013038 Sechium edule HOM05D005764 ORTHO05D006600 1.4e-20 104.0 174 35.1
Migut.I00614 Erythranthe guttata HOM05D005764 ORTHO05D006600 1.9e-20 103.6 166 38.6
Oeu005567.3 Olea europaea HOM05D005764 ORTHO05D006600 1.9e-20 103.6 167 35.9
vmacro19171 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.9e-20 103.6 190 37.4
Ah.11g046810 Amaranthus hybridus HOM05D005764 ORTHO05D006600 2.5e-20 103.2 156 39.1
Manes.06G126050 Manihot esculenta HOM05D005764 ORTHO05D006600 3.2e-20 102.8 167 35.3
ClCG02G014020 Citrullus lanatus HOM05D005764 ORTHO05D006600 4.2e-20 102.4 174 35.1
Rhsim08G0196300 Rhododendron simsii HOM05D005764 ORTHO05D006600 4.2e-20 102.4 193 36.8
CAN.G177.15 Capsicum annuum HOM05D005764 ORTHO05D006600 1.2e-19 100.9 176 37.5
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 2.7e-19 99.8 198 34.3
Duzib205G1181 Durio zibethinus HOM05D005764 ORTHO05D006600 7.9e-19 98.2 184 37.5
Atru.chr6.1906 Acer truncatum HOM05D005764 ORTHO05D006600 1.8e-18 97.1 188 34.6
Dinv18433 Davidia involucrata HOM05D005764 ORTHO05D006600 5.1e-18 95.5 147 38.1
vmacro19173 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 6.7e-18 95.1 200 34.0
Potri.015G105400 Populus trichocarpa HOM05D005764 ORTHO05D006600 1.9e-17 93.6 177 35.6
RcHm_v2.0_Chr2g0162681 Rosa chinensis HOM05D005764 ORTHO05D006600 1.9e-17 93.6 150 38.7
ATR0317G130 Amborella trichopoda HOM05D005764 ORTHO05D006600 5.7e-17 92.0 162 35.2
PGSC0003DMG400017401 Solanum tuberosum HOM05D005764 ORTHO05D006600 2.8e-16 89.7 151 37.7
Lsat_1_v5_gn_4_84661 Lactuca sativa HOM05D005764 ORTHO05D006600 3.7e-16 89.4 155 38.1
Ciclev10014235m.g Citrus clementina HOM05D005764 ORTHO05D006600 4.8e-16 89.0 88 50.0
Solyc07g045400.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 4.8e-16 89.0 151 37.1
Gohir.A03G056500 Gossypium hirsutum HOM05D005764 ORTHO05D006600 8.2e-16 88.2 185 33.0
HanXRQChr09g0273911 Helianthus annuus HOM05D005764 ORTHO05D006600 8.2e-16 88.2 161 39.8
Sopen07g023950 Solanum pennellii HOM05D005764 ORTHO05D006600 8.2e-16 88.2 151 36.4
CsaV3_5G006140 Cucumis sativus L. HOM05D005764 ORTHO05D006600 1.4e-15 87.4 188 30.3
Gorai.003G116400 Gossypium raimondii HOM05D005764 ORTHO05D006600 1.8e-15 87.0 185 35.7
Lj1A1039T30 Lonicera japonica HOM05D005764 ORTHO05D006600 1.8e-15 87.0 143 33.6
THA.LOC104804672 Tarenaya hassleriana HOM05D005764 ORTHO05D006600 6.9e-15 85.1 158 36.1
AT5G61990 Arabidopsis thaliana HOM05D005764 ORTHO05D006600 1.2e-14 84.3 157 32.5
Thhalv10003592m.g Eutrema salsugineum HOM05D005764 ORTHO05D006600 1.2e-14 84.3 169 33.7
Gohir.D03G110000 Gossypium hirsutum HOM05D005764 ORTHO05D006600 3.4e-14 82.8 182 35.2
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 5.8e-14 82.0 171 35.1
DCAR_016460 Daucus carota HOM05D005764 ORTHO05D006600 1.0e-13 81.3 163 33.1
Sp2g25170 Schrenkiella parvula HOM05D005764 ORTHO05D006600 1.0e-13 81.3 155 34.2
EL10Ac5g11299 Beta vulgaris HOM05D005764 ORTHO05D006600 2.9e-13 79.7 149 34.9
vmacro19172 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 2.9e-13 79.7 159 37.1
CDE05G0348 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 8.4e-13 78.2 168 32.7
Aa31LG11G1530 Aethionema arabicum HOM05D005764 ORTHO05D006600 1.4e-12 77.4 165 35.2
CDE05G2510 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 1.4e-12 77.4 165 29.7
AL8G38750 Arabidopsis lyrata HOM05D005764 ORTHO05D006600 2.5e-12 76.6 169 33.1
Prupe.5G142900 Prunus persica HOM05D005764 ORTHO05D006600 9.3e-12 74.7 171 28.1
Carub.0008s2268 Capsella rubella HOM05D005764 ORTHO05D006600 1.6e-11 73.9 157 31.2
BcaB02g09611 Brassica carinata HOM05D005764 ORTHO05D006600 2.1e-11 73.6 168 33.9
A06p28690 Brassica napus HOM05D005764 ORTHO05D006600 3.5e-11 72.8 162 33.3
BraA06t25809Z Brassica rapa HOM05D005764 ORTHO05D006600 3.5e-11 72.8 162 33.3
C03p65110 Brassica napus HOM05D005764 ORTHO05D006600 1.0e-10 71.2 173 33.5
BolC3t18765H Brassica oleracea HOM05D005764 ORTHO05D006600 1.3e-10 70.9 173 33.5
CARHR275790 Cardamine hirsuta HOM05D005764 ORTHO05D006600 2.3e-10 70.1 171 31.6
HanXRQChr03g0075031 Helianthus annuus HOM05D005764 ORTHO05D006600 2.3e-10 70.1 194 26.3
MELO3C011746.2 Cucumis melo HOM05D005764 ORTHO05D006600 1.9e-09 67.0 151 29.8
RcHm_v2.0_Chr1g0325241 Rosa chinensis HOM05D005764 ORTHO05D006600 2.8e-08 63.2 71 45.1
HPP92_025492 Vanilla planifolia HOM05D005764 ORTHO05D006600 2.4e-07 60.1 121 30.6
HanXRQChr16g0498891 Helianthus annuus HOM05D005764 ORTHO05D006600 9.0e-07 58.2 168 28.0
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 7.7e-06 55.1 153 27.5


User provided reference genes

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