Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.4118 Acer truncatum HOM05D003357 ORTHO05D003779 9.1e-128 460.3 242 100.0
Ciclev10026388m.g Citrus clementina HOM05D003357 ORTHO05D003779 6.7e-54 214.9 239 55.6
Gohir.A05G141100 Gossypium hirsutum HOM05D003357 ORTHO05D003779 1.9e-40 170.2 230 47.0
Dinv37830 Davidia involucrata HOM05D003357 ORTHO05D003779 7.2e-40 168.3 208 48.6
Gohir.D05G143300 Gossypium hirsutum HOM05D003357 ORTHO05D003779 7.2e-40 168.3 238 45.0
Gorai.009G147200 Gossypium raimondii HOM05D003357 ORTHO05D003779 2.7e-39 166.4 238 44.5
Duzib235G0273 Durio zibethinus HOM05D003357 ORTHO05D003779 1.8e-38 163.7 230 48.3
Hma1.2p1_0090F.1_g045910 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 6.7e-38 161.8 215 45.1
Prupe.3G032500 Prunus persica HOM05D003357 ORTHO05D003779 1.1e-37 161.0 217 47.0
QL05p001541 Quercus lobata HOM05D003357 ORTHO05D003779 9.7e-37 157.9 213 49.3
QL05p001815 Quercus lobata HOM05D003357 ORTHO05D003779 9.7e-37 157.9 213 49.3
RcHm_v2.0_Chr2g0147641 Rosa chinensis HOM05D003357 ORTHO05D003779 1.1e-35 154.5 232 44.4
CiPaw.02G132100 Carya illinoinensis HOM05D003357 ORTHO05D003779 1.4e-35 154.1 214 41.6
Potri.001G163800 Populus trichocarpa HOM05D003357 ORTHO05D003779 1.6e-34 150.6 235 42.6
Sabra01G0129000 Salix brachista HOM05D003357 ORTHO05D003779 3.2e-32 142.9 246 39.4
CANSAT56G4096 Cannabis sativa HOM05D003357 ORTHO05D003779 7.2e-32 141.7 211 40.8
FvH4_6g35660 Fragaria vesca HOM05D003357 ORTHO05D003779 9.4e-32 141.4 199 44.2
FAN05G0423 Fragaria x ananassa HOM05D003357 ORTHO05D003779 1.8e-30 137.1 233 40.8
MD17G1152300 Malus domestica HOM05D003357 ORTHO05D003779 1.8e-30 137.1 216 42.6
Manes.04G150000 Manihot esculenta HOM05D003357 ORTHO05D003779 9.7e-29 131.3 187 43.9
COL.COLO4_30848 Corchorus olitorius HOM05D003357 ORTHO05D003779 6.3e-28 128.6 177 45.2
MBI13_g01678_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 2.0e-26 123.6 237 35.9
Nitab4.5_0003987g0080 Nicotiana tabacum HOM05D003357 ORTHO05D003779 2.0e-26 123.6 201 37.3
Migut.I01123 Erythranthe guttata HOM05D003357 ORTHO05D003779 7.7e-26 121.7 233 37.8
Solyc03g123510.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 1.3e-25 120.9 199 36.2
Peaxi162Scf00038g02213 Petunia axillaris HOM05D003357 ORTHO05D003779 6.5e-25 118.6 182 40.1
DCAR_016095 Daucus carota HOM05D003357 ORTHO05D003779 1.2e-23 114.4 205 40.0
SGA_v2.0_scaffold71G23911 Striga asiatica HOM05D003357 ORTHO05D003779 5.2e-22 109.0 204 36.8
Sc15g0000760 Simmondsia chinensis HOM05D003357 ORTHO05D003779 1.5e-21 107.5 206 35.0
SalBow2G0668 Salvia bowleyana HOM05D003357 ORTHO05D003779 2.0e-21 107.1 227 37.9
CsaV3_7G034060 Cucumis sativus L. HOM05D003357 ORTHO05D003779 2.6e-21 106.7 233 34.8
CAN.G790.70 Capsicum annuum HOM05D003357 ORTHO05D003779 2.2e-20 103.6 189 36.5
MELO3C024316.2 Cucumis melo HOM05D003357 ORTHO05D003779 2.2e-20 103.6 233 33.9
Nitab4.5_0015287g0010 Nicotiana tabacum HOM05D003357 ORTHO05D003779 4.8e-20 102.4 172 37.2
Sed0022278 Sechium edule HOM05D003357 ORTHO05D003779 2.4e-19 100.1 233 33.0
Oeu013442.1 Olea europaea HOM05D000643 ORTHO05D000663 1.6e-18 97.4 190 32.6
Lsat_1_v5_gn_0_41661 Lactuca sativa HOM05D003357 ORTHO05D003779 7.7e-18 95.1 201 36.3
CDE06G1413 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 4.2e-16 89.4 192 32.3
SEGI_11822 Sequoiadendron giganteum HOM05D003357 ORTHO05D003779 1.2e-15 87.8 178 31.5
ATR0317G009 Amborella trichopoda HOM05D003357 ORTHO05D003779 1.8e-14 84.0 207 30.0
HanXRQChr15g0497241 Helianthus annuus HOM05D003357 ORTHO05D003779 5.2e-14 82.4 178 33.7
CDE06G2726 Ceratophyllum demersum HOM05D003357 ORTHO05D003779 1.2e-13 81.3 192 30.7
ATR0121G007 Amborella trichopoda HOM05D003357 ORTHO05D003779 1.7e-12 77.4 172 30.2
MBI06_g01047_MAGBIO Magnolia biondii HOM05D003357 ORTHO05D003779 1.7e-12 77.4 158 32.3
PSO170G2411 Papaver somniferum HOM05D003357 ORTHO05D003779 1.4e-11 74.3 210 27.6
Nn5g27960 Nelumbo nucifera HOM05D003357 ORTHO05D003779 3.1e-11 73.2 142 31.7
SMO164G0048 Selaginella moellendorffii HOM05D003357 ORTHO05D003779 7.0e-11 72.0 178 29.8
Lj9A312T45 Lonicera japonica HOM05D003357 ORTHO05D003779 1.2e-10 71.2 158 33.5
PSO017G4220 Papaver somniferum HOM05D003357 ORTHO05D003779 1.6e-10 70.9 200 27.5
Zm00001eb011530 Zea mays HOM05D003357 ORTHO05D003779 4.5e-10 69.3 161 29.8
HanXRQChr10g0300241 Helianthus annuus HOM05D003357 ORTHO05D003779 5.9e-10 68.9 160 28.8
CARHR143630 Cardamine hirsuta HOM05D003357 ORTHO05D003779 1.7e-09 67.4 158 29.7
Lsat_1_v5_gn_5_107641 Lactuca sativa HOM05D003357 ORTHO05D003779 1.7e-09 67.4 167 29.9
Nitab4.5_0003071g0080 Nicotiana tabacum HOM05D003357 ORTHO05D003779 1.7e-09 67.4 168 29.8
Lj6g0024688 Lotus japonicus HOM05D003357 ORTHO05D003779 2.3e-09 67.0 158 28.5
Cpa.g.sc2.31 Carica papaya HOM05D003357 ORTHO05D003779 3.8e-09 66.2 164 28.0
arahy.Tifrunner.gnm1.ann1.I2CYKQ Arachis hypogaea HOM05D003357 ORTHO05D003779 5.0e-09 65.9 158 29.1
Ca_29933_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 5.0e-09 65.9 164 28.7
Zm00001eb398130 Zea mays HOM05D003357 ORTHO05D003779 5.0e-09 65.9 137 31.4
MSTRG.16542 Avicennia marina HOM05D003357 ORTHO05D003779 6.6e-09 65.5 158 29.7
arahy.Tifrunner.gnm1.ann1.11V3F3 Arachis hypogaea HOM05D003357 ORTHO05D003779 8.6e-09 65.1 158 29.1
Dinv24254 Davidia involucrata HOM05D003357 ORTHO05D003779 8.6e-09 65.1 158 29.7
Duzib248G1129 Durio zibethinus HOM05D003357 ORTHO05D003779 8.6e-09 65.1 144 29.9
Gohir.A01G001200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 8.6e-09 65.1 150 31.3
Gorai.002G001400 Gossypium raimondii HOM05D003357 ORTHO05D003779 8.6e-09 65.1 150 31.3
Lsat_1_v5_gn_7_78341 Lactuca sativa HOM05D003357 ORTHO05D003779 8.6e-09 65.1 158 29.1
Medtr2g007830 Medicago truncatula HOM05D003357 ORTHO05D003779 8.6e-09 65.1 158 27.8
TPR.G19716 Trifolium pratense HOM05D003357 ORTHO05D003779 8.6e-09 65.1 158 29.1
TAR197G0001 Trochodendron aralioides HOM05D003357 ORTHO05D003779 8.6e-09 65.1 162 29.6
DCAR_021821 Daucus carota HOM05D003357 ORTHO05D003779 1.1e-08 64.7 158 29.7
Migut.N01027 Erythranthe guttata HOM05D003357 ORTHO05D003779 1.1e-08 64.7 164 28.7
Gohir.A03G210600 Gossypium hirsutum HOM05D003357 ORTHO05D003779 1.5e-08 64.3 167 28.7
Gohir.D01G000900 Gossypium hirsutum HOM05D003357 ORTHO05D003779 1.5e-08 64.3 150 30.7
Gohir.D02G232200 Gossypium hirsutum HOM05D003357 ORTHO05D003779 1.5e-08 64.3 144 29.9
Gorai.005G260000 Gossypium raimondii HOM05D003357 ORTHO05D003779 1.5e-08 64.3 144 29.9
Sed0024772 Sechium edule HOM05D003357 ORTHO05D003779 1.5e-08 64.3 158 28.5
Nitab4.5_0009907g0030 Nicotiana tabacum HOM05D003357 ORTHO05D003779 1.9e-08 63.9 158 30.4
Thecc.02G042200 Theobroma cacao HOM05D003357 ORTHO05D003779 1.9e-08 63.9 167 28.1
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 2.5e-08 63.5 155 27.7
Lj5C246T11 Lonicera japonica HOM05D003357 ORTHO05D003779 2.5e-08 63.5 139 33.1
Actinidia39063 Actinidia chinensis HOM05D003357 ORTHO05D003779 3.3e-08 63.2 195 27.7
CAN.G1352.13 Capsicum annuum HOM05D003357 ORTHO05D003779 3.3e-08 63.2 158 30.4
Ca_00094_v3 Cicer arietinum L. HOM05D003357 ORTHO05D003779 3.3e-08 63.2 135 31.1
BolC7t43694H Brassica oleracea HOM05D003357 ORTHO05D003779 4.3e-08 62.8 161 28.0
CsaV3_7G022210 Cucumis sativus L. HOM05D003357 ORTHO05D003779 4.3e-08 62.8 158 28.5
Thhalv10001009m.g Eutrema salsugineum HOM05D003357 ORTHO05D003779 4.3e-08 62.8 164 27.4
Nitab4.5_0003615g0040 Nicotiana tabacum HOM05D003357 ORTHO05D003779 4.3e-08 62.8 162 28.4
Phvul.006G211600 Phaseolus vulgaris HOM05D003357 ORTHO05D003779 4.3e-08 62.8 158 28.5
Glyma.08G184000 Glycine max HOM05D003357 ORTHO05D003779 5.6e-08 62.4 158 28.5
TWI23G0276 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 5.6e-08 62.4 141 29.8
Duzib052G0578 Durio zibethinus HOM05D003357 ORTHO05D003779 7.3e-08 62.0 171 27.5
Os03g0262700 Oryza sativa ssp. japonica HOM05D003357 ORTHO05D003779 7.3e-08 62.0 169 27.8
TWI14G1244 Tripterygium wilfordii HOM05D003357 ORTHO05D003779 7.3e-08 62.0 141 30.5
BcaC06g34220 Brassica carinata HOM05D003357 ORTHO05D003779 9.5e-08 61.6 161 27.3
A06p44690 Brassica napus HOM05D003357 ORTHO05D003779 9.5e-08 61.6 161 27.3
BraA06t27342Z Brassica rapa HOM05D003357 ORTHO05D003779 9.5e-08 61.6 161 27.3
ClCG00G003530 Citrullus lanatus HOM05D003357 ORTHO05D003779 9.5e-08 61.6 158 28.5
ClCG09G014530 Citrullus lanatus HOM05D003357 ORTHO05D003779 9.5e-08 61.6 158 28.5
MELO3C012699.2 Cucumis melo HOM05D003357 ORTHO05D003779 9.5e-08 61.6 158 28.5
HanXRQChr11g0337561 Helianthus annuus HOM05D003357 ORTHO05D003779 9.5e-08 61.6 154 29.9
Sed0004213 Sechium edule HOM05D003357 ORTHO05D003779 9.5e-08 61.6 165 29.1
SGA_v2.0_scaffold1G00338 Striga asiatica HOM05D003357 ORTHO05D003779 9.5e-08 61.6 135 30.4
Atru.chr6.1007 Acer truncatum HOM05D003357 ORTHO05D003779 1.2e-07 61.2 166 25.3
Lalb_Chr20g0123351 Lupinus albus HOM05D003357 ORTHO05D003779 1.2e-07 61.2 160 26.9
Peaxi162Scf00003g03752 Petunia axillaris HOM05D003357 ORTHO05D003779 1.6e-07 60.8 164 29.3
VMungo0540G1809 Vigna mungo HOM05D003357 ORTHO05D003779 1.6e-07 60.8 158 28.5
MSTRG.5244 Avicennia marina HOM05D003357 ORTHO05D003779 2.1e-07 60.5 141 29.8
Hma1.2p1_0704F.1_g206850 Hydrangea macrophylla HOM05D003357 ORTHO05D003779 2.1e-07 60.5 159 29.6
Nitab4.5_0000078g0390 Nicotiana tabacum HOM05D003357 ORTHO05D003779 2.1e-07 60.5 140 30.0
SGA_v2.0_scaffold110G31275 Striga asiatica HOM05D003357 ORTHO05D003779 2.1e-07 60.5 135 30.4
ClCG05G009890 Citrullus lanatus HOM05D003357 ORTHO05D003779 2.8e-07 60.1 165 28.5
Ciclev10002130m.g Citrus clementina HOM05D003357 ORTHO05D003779 2.8e-07 60.1 171 29.8
MELO3C031692.2 Cucumis melo HOM05D003357 ORTHO05D003779 2.8e-07 60.1 146 30.1
MD08G1227400 Malus domestica HOM05D003357 ORTHO05D003779 2.8e-07 60.1 163 27.0
Solyc01g104580.3 Solanum lycopersicum HOM05D003357 ORTHO05D003779 2.8e-07 60.1 162 29.0
Sopen01g047090 Solanum pennellii HOM05D003357 ORTHO05D003779 2.8e-07 60.1 162 29.0
PGSC0003DMG400029777 Solanum tuberosum HOM05D003357 ORTHO05D003779 2.8e-07 60.1 162 29.0
AL5G10030 Arabidopsis lyrata HOM05D003357 ORTHO05D003779 3.6e-07 59.7 159 28.3
AT2G01080 Arabidopsis thaliana HOM05D003357 ORTHO05D003779 3.6e-07 59.7 159 28.3
Oeu041075.1 Olea europaea HOM05D003357 ORTHO05D003779 3.6e-07 59.7 139 28.8
Sc02g0001800 Simmondsia chinensis HOM05D003357 ORTHO05D003779 3.6e-07 59.7 168 27.4
HPP92_011155 Vanilla planifolia HOM05D003357 ORTHO05D003779 3.6e-07 59.7 169 27.8
Peaxi162Scf00011g00031 Petunia axillaris HOM05D003357 ORTHO05D003779 4.7e-07 59.3 170 27.6
SalBow5G0183 Salvia bowleyana HOM05D003357 ORTHO05D003779 4.7e-07 59.3 158 27.8
THA.LOC104805045 Tarenaya hassleriana HOM05D003357 ORTHO05D003779 4.7e-07 59.3 114 31.6
Carub.0005s0007 Capsella rubella HOM05D003357 ORTHO05D003779 6.1e-07 58.9 159 28.3
FAN08G0651 Fragaria x ananassa HOM05D003357 ORTHO05D003779 6.1e-07 58.9 158 28.5
Glyma.15G048800 Glycine max HOM05D003357 ORTHO05D003779 6.1e-07 58.9 158 27.8
PGR142G3651 Punica granatum HOM05D003357 ORTHO05D003779 6.1e-07 58.9 169 27.2
QL11p019146 Quercus lobata HOM05D003357 ORTHO05D003779 6.1e-07 58.9 165 26.1
unitig_749.g13510 Utricularia gibba HOM05D000349 ORTHO05D003779 6.1e-07 58.9 166 26.5
CSS0046968 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 8.0e-07 58.5 164 28.7
Haze_01610 Corylus avellana HOM05D003357 ORTHO05D003779 8.0e-07 58.5 141 30.5
Haze_01612 Corylus avellana HOM05D003357 ORTHO05D003779 8.0e-07 58.5 141 30.5
FAN13G0157 Fragaria x ananassa HOM05D003357 ORTHO05D003779 8.0e-07 58.5 158 29.1
HanXRQChr16g0514191 Helianthus annuus HOM05D003357 ORTHO05D003779 8.0e-07 58.5 184 25.5
Cfa005555 Carpinus fangiana HOM05D003357 ORTHO05D003779 1.0e-06 58.2 164 28.0
Lsat_1_v5_gn_9_116201 Lactuca sativa HOM05D003357 ORTHO05D003779 1.0e-06 58.2 181 26.5
Manes.07G012600 Manihot esculenta HOM05D003357 ORTHO05D003779 1.0e-06 58.2 165 26.1
CiPaw.06G149700 Carya illinoinensis HOM05D003357 ORTHO05D003779 1.4e-06 57.8 167 26.3
FvH4_5g29780 Fragaria vesca HOM05D003357 ORTHO05D003779 1.4e-06 57.8 158 29.1
FAN18G4337 Fragaria x ananassa HOM05D003357 ORTHO05D003779 1.4e-06 57.8 158 29.1
SalBow5G2536 Salvia bowleyana HOM05D003357 ORTHO05D003779 1.4e-06 57.8 135 28.9
Manes.10G036100 Manihot esculenta HOM05D003357 ORTHO05D003779 2.3e-06 57.0 150 28.0
Manes.10G133000 Manihot esculenta HOM05D003357 ORTHO05D003779 2.3e-06 57.0 150 26.7
CSS0044852 Camellia sinensis var. sinensis HOM05D003357 ORTHO05D003779 4.0e-06 56.2 144 29.2
DCAR_007623 Daucus carota HOM05D002137 ORTHO05D002144 4.0e-06 56.2 166 28.9
Manes.03G085403 Manihot esculenta HOM05D003357 ORTHO05D003779 4.0e-06 56.2 105 34.3
Manes.03G114750 Manihot esculenta HOM05D003357 ORTHO05D003779 4.0e-06 56.2 105 34.3
Manes.07G113500 Manihot esculenta HOM05D003357 ORTHO05D003779 4.0e-06 56.2 105 34.3
Manes.12G086500 Manihot esculenta HOM05D003357 ORTHO05D003779 4.0e-06 56.2 105 34.3
Potri.003G021934 Populus trichocarpa HOM05D003357 ORTHO05D003779 4.0e-06 56.2 173 24.9
RcHm_v2.0_Chr7g0223311 Rosa chinensis HOM05D003357 ORTHO05D003779 4.0e-06 56.2 132 31.8
CsaV3_3G018700 Cucumis sativus L. HOM05D003357 ORTHO05D003779 5.2e-06 55.8 168 26.8
Manes.17G088150 Manihot esculenta HOM05D003357 ORTHO05D003779 5.2e-06 55.8 102 33.3
SHI16610 Sapria himalayana HOM05D003357 ORTHO05D003779 5.2e-06 55.8 168 28.6
Manes.01G111900 Manihot esculenta HOM05D003357 ORTHO05D003779 6.8e-06 55.5 105 34.3


User provided reference genes

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