Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 7.0e-105 384.0 204 100.0
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 1.1e-76 290.4 201 79.1
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 1.7e-74 283.1 197 79.2
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 2.3e-71 272.7 185 79.5
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 3.9e-71 271.9 199 75.4
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 6.6e-71 271.2 206 74.3
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 1.5e-70 270.0 188 78.2
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 5.6e-70 268.1 201 73.1
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 7.3e-70 267.7 202 73.3
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.3e-69 266.9 197 75.1
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.6e-69 266.5 198 75.8
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 4.8e-69 265.0 198 74.2
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 4.8e-69 265.0 193 75.1
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 8.1e-69 264.2 186 75.8
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 8.1e-69 264.2 201 72.6
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.1e-68 263.8 192 76.0
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.4e-68 263.5 201 72.6
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 1.8e-68 263.1 186 74.7
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.8e-68 263.1 180 79.4
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.1e-68 262.3 175 80.6
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 3.1e-68 262.3 190 76.8
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 4.0e-68 261.9 190 77.4
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 5.3e-68 261.5 198 73.2
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 1.2e-67 260.4 186 74.2
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.2e-67 260.4 197 74.1
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 1.5e-67 260.0 185 77.3
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.5e-67 260.0 191 75.4
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.0e-67 259.6 201 71.1
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 3.4e-67 258.8 193 74.6
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 4.4e-67 258.5 186 74.2
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 7.6e-67 257.7 185 75.1
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 1.7e-66 256.5 196 71.4
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 2.2e-66 256.1 202 70.3
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.9e-66 255.8 191 73.8
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.9e-66 255.8 191 73.8
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 2.9e-66 255.8 197 71.1
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 6.4e-66 254.6 186 75.3
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 6.4e-66 254.6 190 73.2
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 8.4e-66 254.2 202 70.8
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 1.1e-65 253.8 200 69.0
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 1.9e-65 253.1 182 76.9
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 1.9e-65 253.1 198 70.7
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 3.2e-65 252.3 198 69.2
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 7.1e-65 251.1 184 73.9
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 7.1e-65 251.1 174 74.7
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 1.2e-64 250.4 193 72.5
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 2.1e-64 249.6 185 73.5
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 2.7e-64 249.2 181 74.0
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 3.5e-64 248.8 179 75.4
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 3.5e-64 248.8 174 74.1
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 7.9e-64 247.7 175 76.0
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 1.0e-63 247.3 166 79.5
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.0e-63 247.3 213 67.6
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 1.0e-63 247.3 182 72.0
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 1.0e-63 247.3 179 73.2
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.0e-63 247.3 183 74.3
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 1.3e-63 246.9 171 77.2
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.7e-63 246.5 201 70.1
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.7e-63 246.5 183 73.8
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 1.7e-63 246.5 182 73.6
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 2.3e-63 246.1 176 75.6
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 2.3e-63 246.1 182 73.1
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 3.0e-63 245.7 182 73.1
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 5.1e-63 245.0 186 73.7
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 5.1e-63 245.0 193 71.5
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 5.1e-63 245.0 179 74.3
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 8.7e-63 244.2 184 71.7
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 8.7e-63 244.2 186 73.1
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 8.7e-63 244.2 183 71.6
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.9e-62 243.0 175 75.4
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.9e-62 243.0 183 73.8
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 2.5e-62 242.7 194 70.1
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 2.5e-62 242.7 184 71.7
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 2.5e-62 242.7 180 70.6
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 3.3e-62 242.3 183 70.5
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 4.3e-62 241.9 179 74.3
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 4.3e-62 241.9 182 71.4
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 7.4e-62 241.1 177 73.4
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 9.6e-62 240.7 203 67.0
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 9.6e-62 240.7 175 74.9
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 1.3e-61 240.4 177 72.9
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 1.3e-61 240.4 194 69.1
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 1.3e-61 240.4 187 69.0
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 1.6e-61 240.0 181 72.9
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 1.6e-61 240.0 182 74.2
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 1.6e-61 240.0 196 68.4
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 2.8e-61 239.2 201 67.2
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 2.8e-61 239.2 200 68.5
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 2.8e-61 239.2 183 69.9
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 3.6e-61 238.8 180 71.7
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 3.6e-61 238.8 187 70.6
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 6.2e-61 238.0 174 73.6
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 6.2e-61 238.0 200 69.0
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 8.1e-61 237.7 188 68.6
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 1.1e-60 237.3 187 69.5
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 1.1e-60 237.3 265 55.5
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 1.1e-60 237.3 196 68.9
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 1.4e-60 236.9 190 67.9
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 1.4e-60 236.9 194 68.0
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.4e-60 236.9 195 69.7
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 2.4e-60 236.1 186 71.0
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 2.4e-60 236.1 181 71.3
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 2.4e-60 236.1 196 67.3
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 3.1e-60 235.7 181 70.2
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 4.0e-60 235.3 180 70.0
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 5.3e-60 235.0 202 66.3
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 5.3e-60 235.0 202 66.3
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 6.9e-60 234.6 187 67.4
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 6.9e-60 234.6 187 67.4
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 6.9e-60 234.6 177 70.6
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 2.2e-58 229.6 178 72.5
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 2.2e-58 229.6 186 69.4
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.9e-58 229.2 170 75.3
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 3.8e-58 228.8 131 92.4
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 8.4e-58 227.6 188 68.6
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 2.4e-57 226.1 187 66.8
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 3.2e-57 225.7 169 74.0
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 3.2e-57 225.7 181 68.0
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 3.5e-56 222.2 185 67.0
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 4.6e-56 221.9 185 66.5
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 6.7e-55 218.0 178 70.8
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 9.6e-54 214.2 193 62.2
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.6e-53 213.4 193 61.1
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 6.2e-53 211.5 196 61.7
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.7e-50 203.4 169 65.7
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 4.9e-50 201.8 157 71.3
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 6.5e-50 201.4 167 66.5
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 8.4e-50 201.1 187 59.9
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 7.1e-49 198.0 178 61.2
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.2e-48 197.2 193 62.2
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 7.9e-48 194.5 190 58.9
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 3.7e-45 185.7 176 59.1
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 6.3e-45 184.9 133 72.9
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.1e-44 182.6 127 78.0
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 4.1e-44 182.2 146 71.2
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.3e-42 177.2 124 78.2
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 8.5e-42 174.5 159 62.9
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 1.2e-40 170.6 155 58.7
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 4.8e-37 158.7 197 52.3
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.1e-36 157.5 146 65.8
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.1e-36 157.5 173 52.6
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.1e-36 157.5 173 52.6
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.3e-34 150.6 140 60.0
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 8.5e-34 147.9 192 49.0
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.4e-33 147.1 129 65.9
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 1.8e-31 140.2 140 55.0
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 2.2e-29 133.3 139 51.8
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 8.2e-13 78.2 115 46.1
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 3.5e-11 72.8 46 80.4
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 1.0e-10 71.2 195 30.3
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 2.9e-10 69.7 58 62.1
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 1.5e-09 67.4 69 55.1
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.1e-08 63.5 42 69.0
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 2.7e-08 63.2 168 30.4
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.6e-06 56.6 163 31.9


User provided reference genes

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