Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.386 Acer truncatum HOM05D006627 ORTHO05D007753 0.0e+00 2669.4 1442 100.0
Atru.chr1.369 Acer truncatum HOM05D006627 ORTHO05D007753 0.0e+00 2323.1 1224 99.3
Atru.ctg97_1.2 Acer truncatum HOM05D006627 ORTHO05D007753 0.0e+00 2323.1 1224 99.3
Ciclev10004200m.g Citrus clementina HOM05D006627 ORTHO05D007753 1.1e-225 788.1 1266 44.5
Duzib205G1471 Durio zibethinus HOM05D006627 ORTHO05D007753 9.8e-169 599.0 1178 41.4
Thecc.03G182600 Theobroma cacao HOM05D006627 ORTHO05D007753 6.4e-152 543.1 1201 38.6
TWI14G0178 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 5.8e-137 493.4 1250 35.8
Duzib084G0535 Durio zibethinus HOM05D006627 ORTHO05D007753 3.2e-135 487.6 1168 38.0
TWI23G0587 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 7.1e-135 486.5 1128 37.4
COL.COLO4_28015 Corchorus olitorius HOM05D006627 ORTHO05D007753 2.4e-127 461.5 1230 35.6
Prupe.2G299600 Prunus persica HOM05D006627 ORTHO05D007753 2.4e-122 444.9 1176 33.3
Sabra04G0052500 Salix brachista HOM05D006627 ORTHO05D007753 7.6e-121 439.9 1213 36.4
Potri.004G079000 Populus trichocarpa HOM05D006627 ORTHO05D007753 8.4e-120 436.4 1186 36.1
MD07G1277900 Malus domestica HOM05D006627 ORTHO05D007753 1.3e-115 422.5 1260 31.1
MD01G1207000 Malus domestica HOM05D006627 ORTHO05D007753 1.1e-111 409.5 1335 30.2
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 1.4e-111 409.1 1106 35.5
Potri.017G142600 Populus trichocarpa HOM05D006627 ORTHO05D007753 9.3e-111 406.4 1094 36.3
FAN06G3118 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.9e-108 398.7 1297 33.3
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 5.7e-108 397.1 1156 32.6
FAN10G1026 Fragaria x ananassa HOM05D006627 ORTHO05D007753 9.0e-106 389.8 1291 33.2
FAN06G3804 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.2e-105 389.4 1297 33.0
FAN10G1355 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.2e-105 389.4 1292 33.0
Gohir.A10G234800 Gossypium hirsutum HOM05D006627 ORTHO05D007753 5.9e-105 387.1 1093 35.3
Dinv28394 Davidia involucrata HOM05D006627 ORTHO05D007753 1.9e-103 382.1 1190 34.7
FAN03G1328 Fragaria x ananassa HOM05D006627 ORTHO05D007753 3.2e-103 381.3 1292 32.9
RcHm_v2.0_Chr1g0378101 Rosa chinensis HOM05D006627 ORTHO05D007753 1.6e-102 379.0 1235 34.1
FAN03G3330 Fragaria x ananassa HOM05D006627 ORTHO05D007753 4.6e-102 377.5 1292 32.8
Cpa.g.sc107.97 Carica papaya HOM05D006627 ORTHO05D007753 1.0e-101 376.3 1093 35.0
FvH4_7g30110 Fragaria vesca HOM05D006627 ORTHO05D007753 1.0e-101 376.3 1254 33.0
Gorai.011G285600 Gossypium raimondii HOM05D006627 ORTHO05D007753 2.2e-99 368.6 1091 35.1
Gohir.D10G247200 Gossypium hirsutum HOM05D006627 ORTHO05D007753 1.4e-98 365.9 1091 35.0
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 3.8e-96 357.8 1514 30.5
FAN01G2627 Fragaria x ananassa HOM05D006627 ORTHO05D007753 8.5e-96 356.7 1249 32.6
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 2.1e-94 352.1 1525 29.9
Lj1C1004T5 Lonicera japonica HOM05D006627 ORTHO05D007753 8.2e-91 340.1 1386 30.7
GSVIVG01028875001 Vitis vinifera HOM05D006627 ORTHO05D007753 3.5e-89 334.7 1245 31.5
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 2.3e-69 268.9 1460 28.2
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 5.6e-63 247.7 1452 27.4
Rhsim03G0190100 Rhododendron simsii HOM05D006627 ORTHO05D007753 2.0e-60 239.2 1150 29.1
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 1.7e-59 236.1 1166 27.7
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 1.7e-59 236.1 1289 28.3
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 3.7e-59 235.0 1358 28.5
CSS0035854 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 3.2e-58 231.9 1107 29.3
CSS0044230 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 3.2e-58 231.9 1107 29.3
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 7.0e-58 230.7 1264 27.2
Rhsim07G0129200 Rhododendron simsii HOM05D006627 ORTHO05D007753 1.7e-56 226.1 1149 28.9
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 1.5e-55 223.0 1127 29.3
Oeu060456.3 Olea europaea HOM05D006627 ORTHO05D007753 1.5e-55 223.0 1196 27.4
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 7.3e-55 220.7 1286 27.6
Peaxi162Scf00444g00008 Petunia axillaris HOM05D006627 ORTHO05D007753 6.8e-53 214.2 1162 28.7
Actinidia03134 Actinidia chinensis HOM05D006627 ORTHO05D007753 1.2e-52 213.4 1116 29.1
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 7.5e-52 210.7 356 40.7
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 1.7e-51 209.5 1418 26.8
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 6.4e-51 207.6 1447 27.4
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 6.4e-51 207.6 1420 27.1
vmacro06638 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 7.0e-50 204.1 1112 28.1
vmacro06637 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 6.0e-49 201.1 1138 28.3
Rhsim07G0129400 Rhododendron simsii HOM05D006627 ORTHO05D007753 3.0e-48 198.7 1103 28.8
Actinidia31835 Actinidia chinensis HOM05D006627 ORTHO05D007753 1.1e-47 196.8 1057 28.4
SalBow4G0794 Salvia bowleyana HOM05D006627 ORTHO05D007753 7.3e-47 194.1 1122 27.3
Cc02_g02490 Coffea canephora HOM05D006627 ORTHO05D007753 7.8e-41 174.1 1356 25.0
Cfa012198 Carpinus fangiana HOM05D006627 ORTHO05D007753 1.3e-40 173.3 1420 26.4
Peaxi162Scf00618g00717 Petunia axillaris HOM05D006627 ORTHO05D007753 1.5e-39 169.9 1174 27.2
CAN.G236.7 Capsicum annuum HOM05D006627 ORTHO05D007753 1.2e-38 166.8 1181 26.7
Haze_08819 Corylus avellana HOM05D006627 ORTHO05D007753 1.6e-38 166.4 1424 26.1
THA.LOC104800273 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 4.7e-38 164.9 1161 28.0
Aa31LG3G8880 Aethionema arabicum HOM05D008661 ORTHO05D010872 3.1e-37 162.2 1034 26.2
DCAR_009389 Daucus carota HOM05D006627 ORTHO05D007753 8.9e-37 160.6 1193 26.2
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 3.3e-31 142.1 1315 25.8
THA.LOC104811963 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 3.3e-31 142.1 1065 27.5
MSTRG.27091 Avicennia marina HOM05D006627 ORTHO05D007753 6.2e-30 137.9 1153 26.1
PGSC0003DMG400010123 Solanum tuberosum HOM05D006627 ORTHO05D007753 8.1e-30 137.5 1172 24.9
Thhalv10024596m.g Eutrema salsugineum HOM05D008661 ORTHO05D010872 2.2e-27 129.4 527 31.9
AUR62031403 Chenopodium quinoa HOM05D006627 ORTHO05D007753 3.8e-27 128.6 1358 24.2
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 1.1e-26 127.1 903 25.5
HanXRQChr13g0394821 Helianthus annuus HOM05D006627 ORTHO05D007753 1.2e-25 123.6 416 32.5
Sp7g23680 Schrenkiella parvula HOM05D008661 ORTHO05D010872 1.2e-25 123.6 1044 25.7
Hund11448 Selenicereus undatus HOM05D006627 ORTHO05D007753 4.6e-25 121.7 1329 25.8
Manes.02G019000 Manihot esculenta HOM05D006627 ORTHO05D007753 6.0e-25 121.3 1236 25.6
Dinv35243 Davidia involucrata HOM05D006627 ORTHO05D007753 3.0e-24 119.0 504 29.8
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 2.5e-23 115.9 1314 24.7
Ah.07g206700 Amaranthus hybridus HOM05D006627 ORTHO05D007753 5.6e-23 114.8 1458 24.2
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 7.3e-23 114.4 1264 25.5
Carub.0007s1533 Capsella rubella HOM05D008661 ORTHO05D010872 6.2e-22 111.3 484 32.4
EL10Ac3g05437 Beta vulgaris HOM05D006627 ORTHO05D007753 8.1e-22 110.9 1364 24.2
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 1.4e-21 110.2 1221 25.1
Sopen03g004000 Solanum pennellii HOM05D006627 ORTHO05D007753 1.4e-21 110.2 1149 24.7
ECA233G6261 Erigeron canadensis HOM05D006627 ORTHO05D007753 1.8e-21 109.8 740 24.5
Lsat_1_v5_gn_6_5180 Lactuca sativa HOM05D006627 ORTHO05D007753 2.4e-21 109.4 1273 25.3
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 3.1e-21 109.0 1274 25.7
Solyc03g025150.4 Solanum lycopersicum HOM05D006627 ORTHO05D007753 5.3e-21 108.2 1163 24.2
AL7G27440 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 1.2e-20 107.1 1052 24.5
Actinidia14583 Actinidia chinensis HOM05D006627 ORTHO05D007753 2.6e-20 105.9 330 28.5
BcaB03g12481 Brassica carinata HOM05D008661 ORTHO05D010872 3.4e-20 105.5 1184 24.8
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.7e-19 103.2 1265 24.6
Atru.chr9.2148 Acer truncatum HOM05D006627 ORTHO05D007753 8.4e-19 100.9 193 39.9
AT5G52530 Arabidopsis thaliana HOM05D008661 ORTHO05D010872 1.1e-18 100.5 785 27.3
BcaC07g38204 Brassica carinata HOM05D008661 ORTHO05D010872 1.1e-18 100.5 417 30.9
BolC8t48627H Brassica oleracea HOM05D008661 ORTHO05D010872 1.1e-18 100.5 417 30.9
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 1.1e-18 100.5 417 30.9
C08p09590 Brassica napus HOM05D008661 ORTHO05D010872 1.9e-18 99.8 414 32.6
A08p21040 Brassica napus HOM05D008661 ORTHO05D010872 2.1e-17 96.3 417 31.7
AL8G26990 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 2.7e-17 95.9 810 26.5
Hma1.2p1_0327F.1_g126380 Hydrangea macrophylla HOM05D006627 ORTHO05D007753 3.5e-17 95.5 496 29.8
MSTRG.8718 Avicennia marina HOM05D006627 ORTHO05D007753 4.6e-17 95.1 1185 24.8
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 1.0e-16 94.0 328 30.5
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 1.3e-16 93.6 346 30.9
Zm00001eb179470 Zea mays HOM05D006627 ORTHO05D007753 2.3e-16 92.8 235 34.9
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 3.0e-16 92.4 1051 24.5
CDE04G0350 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 8.7e-16 90.9 717 24.4
ECA232G3189 Erigeron canadensis HOM05D006627 ORTHO05D007753 8.7e-16 90.9 317 31.2
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 1.1e-15 90.5 408 30.6
Sp6g14700 Schrenkiella parvula HOM05D008661 ORTHO05D010872 4.3e-15 88.6 1045 23.4
CDE07G1237 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 5.6e-15 88.2 753 24.7
EL10Ac5g12811 Beta vulgaris HOM05D006627 ORTHO05D007753 2.1e-14 86.3 738 24.3
CARHR233070 Cardamine hirsuta HOM05D008661 ORTHO05D010872 2.1e-14 86.3 951 27.3
Migut.F00307 Erythranthe guttata HOM05D006627 ORTHO05D007753 2.8e-14 85.9 1122 23.9
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 3.4e-12 79.0 1227 24.4
BcaB03g12479 Brassica carinata HOM05D008661 ORTHO05D010872 3.4e-12 79.0 776 25.8
Dinv35244 Davidia involucrata HOM05D006627 ORTHO05D007753 3.4e-12 79.0 130 45.4
Lsat_1_v5_gn_9_57440 Lactuca sativa HOM05D006627 ORTHO05D007753 1.7e-11 76.6 502 23.9
Carub.0008s1265 Capsella rubella HOM05D008661 ORTHO05D010872 1.4e-10 73.6 811 25.5
Cpa.g.sc107.94 Carica papaya HOM05D006627 ORTHO05D007753 7.1e-10 71.2 364 27.2
HanXRQChr09g0252481 Helianthus annuus HOM05D029832 ORTHO05D007753 7.9e-09 67.8 474 26.4
Ah.07g196520 Amaranthus hybridus HOM05D006627 ORTHO05D007753 1.0e-08 67.4 1229 23.3
unitig_46.g18802 Utricularia gibba HOM05D006627 ORTHO05D007753 1.8e-08 66.6 276 26.4
A08p21060 Brassica napus HOM05D008661 ORTHO05D010872 5.1e-08 65.1 382 25.1
HanXRQChr14g0462471 Helianthus annuus HOM05D029832 ORTHO05D007753 1.5e-07 63.5 274 28.5
TWI60G0847 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 9.6e-07 60.8 286 26.9


User provided reference genes

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