Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 1.1e-276 956.1 500 100.0
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 1.3e-147 527.3 377 70.3
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 8.5e-120 434.9 406 57.1
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.3e-115 421.0 377 58.4
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 1.7e-115 420.6 391 57.3
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.8e-115 419.9 377 58.1
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 9.1e-114 414.8 378 59.0
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 9.1e-114 414.8 379 57.0
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 6.5e-112 408.7 376 58.5
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.5e-111 407.5 413 53.3
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 5.5e-111 405.6 372 57.5
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 1.2e-110 404.4 379 57.0
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 3.6e-110 402.9 381 55.9
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 2.3e-109 400.2 403 53.1
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 4.0e-109 399.4 374 57.8
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 2.0e-108 397.1 386 55.2
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 9.8e-108 394.8 377 55.7
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 1.8e-106 390.6 379 55.4
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 2.4e-106 390.2 389 55.0
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 5.4e-106 389.0 372 56.2
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 7.0e-106 388.7 380 54.7
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 2.7e-105 386.7 379 54.4
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 2.7e-105 386.7 411 50.9
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 1.0e-104 384.8 383 53.5
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 2.2e-104 383.6 397 52.1
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 3.8e-104 382.9 380 52.6
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 6.5e-104 382.1 378 53.7
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 2.7e-102 376.7 379 52.5
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 3.6e-102 376.3 408 50.0
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 4.7e-102 375.9 388 51.3
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 8.0e-102 375.2 378 53.2
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 1.0e-101 374.8 378 53.2
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 8.8e-101 371.7 384 51.8
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 1.7e-99 367.5 342 55.8
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 1.7e-99 367.5 385 50.6
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 4.9e-99 365.9 380 51.1
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 1.1e-98 364.8 373 53.1
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 1.4e-98 364.4 378 52.9
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 7.0e-98 362.1 379 50.7
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 9.1e-98 361.7 392 51.5
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 3.5e-97 359.8 379 51.5
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 4.5e-97 359.4 381 53.0
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.3e-96 357.8 381 52.5
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.3e-96 357.8 381 52.0
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 1.3e-96 357.8 388 49.7
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 2.9e-96 356.7 401 49.9
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 3.8e-96 356.3 401 49.4
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.0e-96 355.9 381 52.2
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 8.6e-96 355.1 401 48.6
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.5e-95 354.4 399 48.1
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 1.9e-95 354.0 401 47.1
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.9e-95 354.0 378 51.6
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 1.6e-94 350.9 375 50.1
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 1.6e-94 350.9 378 52.4
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 2.8e-94 350.1 397 48.9
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 8.0e-94 348.6 370 53.2
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 1.0e-93 348.2 319 57.4
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.5e-92 344.4 417 49.2
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 2.0e-92 344.0 393 47.8
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 4.4e-92 342.8 375 50.7
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 9.8e-92 341.7 374 50.3
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 9.8e-92 341.7 383 49.3
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.7e-91 340.9 398 49.2
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 1.7e-91 340.9 392 47.4
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 1.8e-90 337.4 465 45.2
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 5.4e-90 335.9 379 48.5
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 3.5e-89 333.2 378 47.1
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 3.5e-89 333.2 382 48.7
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 1.0e-88 331.6 400 47.0
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 2.3e-88 330.5 412 45.1
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 3.9e-88 329.7 400 46.8
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 5.0e-88 329.3 380 47.1
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 6.6e-88 328.9 383 45.2
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 2.5e-87 327.0 365 47.1
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.4e-85 321.2 387 45.5
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 3.1e-85 320.1 398 43.5
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 2.0e-84 317.4 391 48.1
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 3.4e-84 316.6 400 44.0
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 3.4e-84 316.6 370 48.9
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 1.3e-83 314.7 284 55.3
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 1.3e-83 314.7 386 46.1
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 2.9e-83 313.5 380 43.4
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 6.4e-83 312.4 386 46.6
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 3.2e-82 310.1 402 44.0
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 5.4e-82 309.3 382 45.0
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 5.4e-82 309.3 422 42.4
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 7.0e-82 308.9 382 45.8
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 2.7e-81 307.0 422 41.7
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 6.0e-81 305.8 422 42.2
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 6.0e-81 305.8 422 42.2
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 6.0e-81 305.8 422 42.2
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 7.8e-81 305.4 373 45.8
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 7.8e-81 305.4 377 45.4
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 1.3e-80 304.7 380 42.6
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 1.7e-80 304.3 394 42.4
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 3.9e-80 303.1 323 49.8
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 6.6e-80 302.4 381 47.2
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 9.5e-79 298.5 380 46.3
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 2.1e-78 297.4 582 35.1
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 3.6e-78 296.6 401 43.1
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 4.7e-78 296.2 375 42.7
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 6.2e-78 295.8 387 45.7
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 5.2e-77 292.7 398 44.2
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 2.2e-75 287.3 404 42.8
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 6.4e-75 285.8 412 44.2
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 4.1e-74 283.1 381 42.5
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.0e-72 278.5 402 39.3
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.1e-71 275.0 376 42.6
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 5.1e-64 249.6 407 40.0
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 3.6e-62 243.4 383 40.7
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 1.2e-60 238.4 381 39.6
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.0e-60 237.7 368 41.0
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 6.4e-59 232.6 377 38.2
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 4.6e-57 226.5 229 49.8
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 2.3e-56 224.2 420 36.4
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 1.5e-55 221.5 268 47.4
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 3.3e-55 220.3 296 44.6
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 4.6e-49 199.9 269 45.7
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 5.1e-48 196.4 354 37.0
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 4.3e-47 193.4 372 34.9
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 9.0e-45 185.7 381 35.7
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 4.5e-44 183.3 412 32.5
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 4.5e-44 183.3 188 47.3
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 7.1e-42 176.0 400 34.2
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 6.7e-40 169.5 202 45.5
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.5e-39 168.3 277 37.5
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 4.0e-37 160.2 293 36.9
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.2e-36 158.7 211 41.2
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 3.4e-36 157.1 423 29.8
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 8.2e-30 136.0 199 39.7
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 3.1e-29 134.0 182 46.2
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.2e-28 132.1 310 33.9
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 4.6e-25 120.2 103 56.3
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 6.3e-22 109.8 164 40.9
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.1e-21 109.0 217 35.5
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.4e-21 108.6 394 30.2
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.8e-21 108.2 393 30.3
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 9.0e-21 105.9 289 29.1
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 1.5e-20 105.1 154 41.6
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 2.6e-20 104.4 147 41.5
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 2.2e-19 101.3 186 34.9
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 2.1e-17 94.7 401 23.7
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 6.1e-17 93.2 143 37.1
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 1.0e-16 92.4 77 57.1
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.1e-16 90.1 376 27.1
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 2.2e-14 84.7 77 54.5
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 3.7e-14 84.0 145 33.1
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 3.4e-12 77.4 122 38.5
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 3.4e-12 77.4 122 38.5
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 7.2e-10 69.7 59 57.6
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 9.4e-10 69.3 150 34.0
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 1.2e-09 68.9 99 41.4
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 3.0e-08 64.3 104 35.6
ATR0589G117 Amborella trichopoda HOM05D004436 ORTHO05D005179 7.4e-07 59.7 88 39.8
PSO017G0055 Papaver somniferum HOM05D004436 ORTHO05D005179 4.8e-06 57.0 121 31.4


User provided reference genes

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