Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 1.1e-33 146.4 95 100.0
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 8.0e-19 97.1 97 70.1
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 4.0e-18 94.7 97 74.2
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 4.0e-18 94.7 96 69.8
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 4.8e-16 87.8 83 77.1
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 8.3e-16 87.0 97 66.0
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 1.1e-15 86.7 93 67.7
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 3.1e-15 85.1 88 73.9
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 7.0e-15 84.0 78 74.4
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 9.1e-15 83.6 87 75.9
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 9.1e-15 83.6 85 72.9
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 9.1e-15 83.6 78 75.6
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 9.1e-15 83.6 78 75.6
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 1.2e-14 83.2 92 68.5
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 1.2e-14 83.2 86 72.1
Lalb_Chr04g0263271 Lupinus albus HOM05D003238 ORTHO05D003571 1.2e-14 83.2 88 71.6
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 1.6e-14 82.8 92 66.3
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 1.6e-14 82.8 88 70.5
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.5e-14 81.6 74 78.4
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 3.5e-14 81.6 78 74.4
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 3.5e-14 81.6 96 66.7
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 3.5e-14 81.6 78 74.4
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 4.5e-14 81.3 87 72.4
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 4.5e-14 81.3 78 73.1
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 4.5e-14 81.3 96 70.8
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 4.5e-14 81.3 86 72.1
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 5.9e-14 80.9 87 72.4
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.7e-13 79.3 87 70.1
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 2.3e-13 79.0 93 64.5
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 2.3e-13 79.0 93 65.6
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 2.3e-13 79.0 96 67.7
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.9e-13 78.6 89 69.7
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 2.9e-13 78.6 89 69.7
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 8.6e-13 77.0 88 63.6
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 1.1e-12 76.6 85 49.4
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.1e-12 76.6 98 63.3
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 1.1e-12 76.6 96 64.6
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 1.5e-12 76.3 89 68.5
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.5e-12 76.3 95 66.3
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.9e-12 75.9 93 65.6
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 2.5e-12 75.5 92 63.0
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 3.2e-12 75.1 58 69.0
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 3.2e-12 75.1 83 69.9
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 4.2e-12 74.7 86 65.1
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 5.5e-12 74.3 87 48.3
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 5.5e-12 74.3 94 63.8
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 7.2e-12 73.9 81 71.6
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 9.5e-12 73.6 91 63.7
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 1.6e-11 72.8 95 65.3
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 1.6e-11 72.8 77 75.3
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 1.6e-11 72.8 78 67.9
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 2.1e-11 72.4 73 71.2
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.8e-11 72.0 85 65.9
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 2.8e-11 72.0 96 65.6
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 3.6e-11 71.6 77 70.1
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 6.1e-11 70.9 88 69.3
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 1.0e-10 70.1 76 71.1
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 1.0e-10 70.1 92 65.2
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.0e-10 70.1 102 58.8
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 1.0e-10 70.1 93 63.4
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.0e-10 70.1 88 64.8
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 1.4e-10 69.7 99 59.6
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.8e-10 69.3 75 69.3
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 2.3e-10 68.9 84 65.5
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.0e-10 68.6 75 70.7
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 3.0e-10 68.6 78 61.5
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 3.0e-10 68.6 85 64.7
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 4.0e-10 68.2 50 66.0
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 4.0e-10 68.2 88 63.6
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 4.0e-10 68.2 97 46.4
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 5.2e-10 67.8 78 62.8
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 5.2e-10 67.8 85 64.7
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 6.8e-10 67.4 88 62.5
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 8.8e-10 67.0 82 64.6
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 1.2e-09 66.6 89 62.9
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.5e-09 66.2 47 61.7
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 2.0e-09 65.9 91 60.4
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 2.6e-09 65.5 95 58.9
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 4.4e-09 64.7 82 63.4
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 5.7e-09 64.3 84 61.9
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 5.7e-09 64.3 85 62.4
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 9.8e-09 63.5 90 58.9
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.3e-08 63.2 89 60.7
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 1.3e-08 63.2 54 61.1
ECA247G2422 Erigeron canadensis HOM05D003238 ORTHO05D003571 1.7e-08 62.8 52 59.6
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 1.7e-08 62.8 72 69.4
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 2.2e-08 62.4 80 62.5
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 2.2e-08 62.4 89 59.6
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.2e-08 62.4 89 59.6
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.2e-08 62.4 89 62.9
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 2.2e-08 62.4 98 57.1
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 3.7e-08 61.6 85 56.5
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 3.7e-08 61.6 72 69.4
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 4.9e-08 61.2 89 61.8
HPP92_005498 Vanilla planifolia HOM05D003238 ORTHO05D003571 4.9e-08 61.2 78 64.1
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 6.3e-08 60.8 62 48.4
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 8.3e-08 60.5 89 57.3
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.1e-07 60.1 100 57.0
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.1e-07 60.1 87 42.5
EL10Ac7g16367 Beta vulgaris HOM05D003238 ORTHO05D003571 1.4e-07 59.7 54 57.4
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 1.4e-07 59.7 79 50.6
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 1.4e-07 59.7 79 59.5
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 1.4e-07 59.7 79 50.6
Aa31LG4G3050 Aethionema arabicum HOM05D003238 ORTHO05D003571 1.8e-07 59.3 79 62.0
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 1.8e-07 59.3 85 62.4
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 1.8e-07 59.3 79 39.2
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.8e-07 59.3 89 59.6
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 1.8e-07 59.3 87 59.8
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.8e-07 59.3 62 48.4
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 2.4e-07 58.9 79 59.5
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 2.4e-07 58.9 86 58.1
AUR62001519 Chenopodium quinoa HOM05D003238 ORTHO05D003571 3.1e-07 58.5 78 64.1
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 3.1e-07 58.5 93 41.9
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 4.1e-07 58.2 101 52.5
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 5.4e-07 57.8 80 58.8
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 5.4e-07 57.8 68 44.1
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 7.0e-07 57.4 84 40.5
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 7.0e-07 57.4 62 46.8
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 9.2e-07 57.0 86 37.2
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 9.2e-07 57.0 62 50.0
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 1.2e-06 56.6 91 58.2
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 1.2e-06 56.6 88 37.5
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 1.6e-06 56.2 94 57.4
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.0e-06 55.8 63 47.6
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.0e-06 55.8 49 59.2
PGSC0003DMG400004852 Solanum tuberosum HOM05D003238 ORTHO05D003571 2.0e-06 55.8 72 68.1
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 3.5e-06 55.1 112 34.8
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 4.5e-06 54.7 84 56.0
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 4.5e-06 54.7 63 47.6
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.5e-06 54.7 63 47.6
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.5e-06 54.7 63 47.6
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 4.5e-06 54.7 80 60.0
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 5.9e-06 54.3 48 52.1
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 5.9e-06 54.3 61 45.9
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 7.8e-06 53.9 83 42.2
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 7.8e-06 53.9 77 61.0


User provided reference genes

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