Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3756 Acer truncatum HOM05D007812 ORTHO05D009912 2.3e-67 258.8 135 100.0
Manes.11G025800 Manihot esculenta HOM05D007812 ORTHO05D009912 3.8e-14 82.0 65 84.6
Cpa.g.sc25.43 Carica papaya HOM05D007812 ORTHO05D009912 6.4e-14 81.3 63 81.0
CiPaw.02G139600 Carya illinoinensis HOM05D007812 ORTHO05D009912 7.1e-13 77.8 61 72.1
Aa31LG10G880 Aethionema arabicum HOM05D007812 ORTHO05D009912 1.6e-12 76.6 68 75.0
Cfa003579 Carpinus fangiana HOM05D007812 ORTHO05D009912 1.6e-12 76.6 62 71.0
Sp3g12050 Schrenkiella parvula HOM05D007812 ORTHO05D009912 2.7e-12 75.9 58 79.3
Atru.chr1.3738 Acer truncatum HOM05D007812 ORTHO05D009912 4.6e-12 75.1 61 73.8
Thhalv10021887m.g Eutrema salsugineum HOM05D007812 ORTHO05D009912 4.6e-12 75.1 63 76.2
BcaB06g25431 Brassica carinata HOM05D007812 ORTHO05D009912 7.9e-12 74.3 58 77.6
A05p35560 Brassica napus HOM05D007812 ORTHO05D009912 7.9e-12 74.3 58 77.6
C05p53950 Brassica napus HOM05D007812 ORTHO05D009912 7.9e-12 74.3 58 77.6
BolC5t34061H Brassica oleracea HOM05D007812 ORTHO05D009912 7.9e-12 74.3 58 77.6
BraA05t22365Z Brassica rapa HOM05D007812 ORTHO05D009912 7.9e-12 74.3 58 77.6
PGR102G2903 Punica granatum HOM05D007812 ORTHO05D009912 1.0e-11 73.9 62 71.0
CARHR088620 Cardamine hirsuta HOM05D007812 ORTHO05D009912 1.8e-11 73.2 64 75.0
Potri.001G196150 Populus trichocarpa HOM05D007812 ORTHO05D009912 3.0e-11 72.4 65 75.4
Haze_15960 Corylus avellana HOM05D007812 ORTHO05D009912 6.7e-11 71.2 79 51.9
PSO210G6368 Papaver somniferum HOM05D007812 ORTHO05D009912 1.1e-10 70.5 66 72.7
Sabra03G0024000 Salix brachista HOM05D007812 ORTHO05D009912 1.1e-10 70.5 65 73.8
Carub.0003s1338 Capsella rubella HOM05D007812 ORTHO05D009912 2.5e-10 69.3 66 65.2
arahy.Tifrunner.gnm1.ann1.B0MA7N Arachis hypogaea HOM05D007812 ORTHO05D009912 4.3e-10 68.6 45 80.0
CSS0045617 Camellia sinensis var. sinensis HOM05D007812 ORTHO05D009912 5.6e-10 68.2 48 79.2
MBI01_g09945_MAGBIO Magnolia biondii HOM05D007812 ORTHO05D009912 7.4e-10 67.8 74 62.2
COL.COLO4_30669 Corchorus olitorius HOM05D007812 ORTHO05D009912 9.6e-10 67.4 67 67.2
Lj3g0001021 Lotus japonicus HOM05D007812 ORTHO05D009912 1.6e-09 66.6 42 90.5
TPR.G19291 Trifolium pratense HOM05D007812 ORTHO05D009912 1.6e-09 66.6 67 68.7
Medtr8g017190 Medicago truncatula HOM05D007812 ORTHO05D009912 2.8e-09 65.9 62 67.7
Ciclev10026913m.g Citrus clementina HOM05D007812 ORTHO05D009912 3.7e-09 65.5 61 68.9
RcHm_v2.0_Chr2g0143441 Rosa chinensis HOM05D007812 ORTHO05D009912 3.7e-09 65.5 43 86.0
SalBow7G0845 Salvia bowleyana HOM05D007812 ORTHO05D009912 3.7e-09 65.5 67 62.7
CDE06G1846 Ceratophyllum demersum HOM05D007812 ORTHO05D009912 6.2e-09 64.7 61 67.2
Hma1.2p1_0496F.1_g165840 Hydrangea macrophylla HOM05D007812 ORTHO05D009912 6.2e-09 64.7 62 62.9
AL3G25990 Arabidopsis lyrata HOM05D007812 ORTHO05D009912 8.2e-09 64.3 66 60.6
AT3G13845 Arabidopsis thaliana HOM05D007812 ORTHO05D009912 8.2e-09 64.3 66 60.6
Cc04_g01890 Coffea canephora HOM05D007812 ORTHO05D009912 8.2e-09 64.3 67 59.7
Nitab4.5_0000174g0150 Nicotiana tabacum HOM05D007812 ORTHO05D009912 1.1e-08 63.9 41 82.9
Phvul.010G138300 Phaseolus vulgaris HOM05D007812 ORTHO05D009912 1.8e-08 63.2 38 89.5
Migut.D00965 Erythranthe guttata HOM05D007812 ORTHO05D009912 2.4e-08 62.8 63 61.9
Zm00001eb270650 Zea mays HOM05D007812 ORTHO05D009912 2.4e-08 62.8 61 60.7
ECA247G3511 Erigeron canadensis HOM05D007812 ORTHO05D009912 3.1e-08 62.4 48 75.0
Eucgr.J02853 Eucalyptus grandis HOM05D007812 ORTHO05D009912 4.0e-08 62.0 58 63.8
FAN09G2870 Fragaria x ananassa HOM05D007812 ORTHO05D009912 4.0e-08 62.0 43 81.4
Peaxi162Scf00066g01714 Petunia axillaris HOM05D007812 ORTHO05D009912 4.0e-08 62.0 40 80.0
ClCG09G000730 Citrullus lanatus HOM05D007812 ORTHO05D009912 5.3e-08 61.6 37 86.5
Gohir.A05G135100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 5.3e-08 61.6 37 91.9
Gohir.D05G137100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 5.3e-08 61.6 37 91.9
Gorai.009G141500 Gossypium raimondii HOM05D007812 ORTHO05D009912 5.3e-08 61.6 37 91.9
Lalb_Chr04g0263241 Lupinus albus HOM05D007812 ORTHO05D009912 5.3e-08 61.6 41 85.4
Sed0004047 Sechium edule HOM05D007812 ORTHO05D009912 5.3e-08 61.6 41 85.4
arahy.Tifrunner.gnm1.ann1.4U9STT Arachis hypogaea HOM05D007812 ORTHO05D009912 6.9e-08 61.2 67 58.2
Nitab4.5_0000255g0170 Nicotiana tabacum HOM05D007812 ORTHO05D009912 6.9e-08 61.2 70 54.3
QL05p012120 Quercus lobata HOM05D007812 ORTHO05D009912 6.9e-08 61.2 65 61.5
Thecc.06G112400 Theobroma cacao HOM05D007812 ORTHO05D009912 6.9e-08 61.2 36 94.4
TWI31G1317 Tripterygium wilfordii HOM05D007812 ORTHO05D009912 6.9e-08 61.2 58 69.0
THA.LOC104822637 Tarenaya hassleriana HOM05D007812 ORTHO05D009912 9.0e-08 60.8 69 62.3
CAN.G1040.8 Capsicum annuum HOM05D007812 ORTHO05D009912 1.2e-07 60.5 40 80.0
Ca_23324_v3 Cicer arietinum L. HOM05D007812 ORTHO05D009912 1.2e-07 60.5 62 62.9
Potri.003G037100 Populus trichocarpa HOM05D007812 ORTHO05D009912 1.2e-07 60.5 61 65.6
Ah.03g142930 Amaranthus hybridus HOM05D007812 ORTHO05D009912 2.6e-07 59.3 54 74.1
CsaV3_7G034750 Cucumis sativus L. HOM05D007812 ORTHO05D009912 2.6e-07 59.3 36 88.9
DCAR_016154 Daucus carota HOM05D007812 ORTHO05D009912 2.6e-07 59.3 63 60.3
Nitab4.5_0001087g0010 Nicotiana tabacum HOM05D007812 ORTHO05D009912 2.6e-07 59.3 39 82.1
Ah.08g216270 Amaranthus hybridus HOM05D007812 ORTHO05D009912 3.4e-07 58.9 67 59.7
arahy.Tifrunner.gnm1.ann1.X39S4K Arachis hypogaea HOM05D007812 ORTHO05D009912 4.5e-07 58.5 67 56.7
Psat4g188240 Pisum sativum HOM05D007812 ORTHO05D009912 4.5e-07 58.5 62 64.5
Hund18713 Selenicereus undatus HOM05D007812 ORTHO05D009912 4.5e-07 58.5 71 56.3
Sc15g0000160 Simmondsia chinensis HOM05D007812 ORTHO05D009912 4.5e-07 58.5 38 84.2
Sopen04g026470 Solanum pennellii HOM05D007812 ORTHO05D009912 4.5e-07 58.5 38 81.6
PGSC0003DMG400004846 Solanum tuberosum HOM05D007812 ORTHO05D009912 4.5e-07 58.5 61 55.7
PGSC0003DMG400024854 Solanum tuberosum HOM05D007812 ORTHO05D009912 5.8e-07 58.2 39 76.9
Nn8g38844 Nelumbo nucifera HOM05D007812 ORTHO05D009912 1.0e-06 57.4 36 86.1
Gohir.D06G199100 Gossypium hirsutum HOM05D007812 ORTHO05D009912 1.3e-06 57.0 38 81.6
Gorai.010G232000 Gossypium raimondii HOM05D007812 ORTHO05D009912 1.3e-06 57.0 38 81.6
Glyma.07G009200 Glycine max HOM05D007812 ORTHO05D009912 1.7e-06 56.6 35 85.7
Sabra03G0023900 Salix brachista HOM05D010635 ORTHO05D006336 1.7e-06 56.6 38 81.6


User provided reference genes

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