Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3737 Acer truncatum HOM05D000140 ORTHO05D008077 5.3e-245 850.5 411 100.0
Ciclev10024990m.g Citrus clementina HOM05D000140 ORTHO05D008077 1.9e-181 639.4 436 72.2
Potri.003G037000 Populus trichocarpa HOM05D000140 ORTHO05D008077 1.3e-166 590.1 435 66.4
Dinv30373 Davidia involucrata HOM05D000140 ORTHO05D008077 3.8e-166 588.6 436 66.3
Hma1.2p1_0496F.1_g165850 Hydrangea macrophylla HOM05D000140 ORTHO05D008077 4.2e-165 585.1 436 66.1
Duzib192G0008 Durio zibethinus HOM05D000140 ORTHO05D008077 2.1e-164 582.8 436 66.3
Atru.chr1.3755 Acer truncatum HOM05D000140 ORTHO05D008077 6.0e-164 581.3 317 90.2
CiPaw.01G224300 Carya illinoinensis HOM05D000140 ORTHO05D008077 7.4e-162 574.3 436 64.2
Thecc.06G112300 Theobroma cacao HOM05D000140 ORTHO05D008077 1.6e-161 573.2 436 65.6
QL05p012111 Quercus lobata HOM05D000140 ORTHO05D008077 5.3e-160 568.2 434 64.3
Manes.11G025700 Manihot esculenta HOM05D000140 ORTHO05D008077 9.0e-160 567.4 438 65.8
vmacro17024 Vaccinium macrocarpon HOM05D000140 ORTHO05D008077 5.8e-159 564.7 436 62.8
Haze_15961 Corylus avellana HOM05D000140 ORTHO05D008077 1.0e-158 563.9 437 63.6
Cfa003578 Carpinus fangiana HOM05D000140 ORTHO05D008077 6.5e-158 561.2 437 62.9
Actinidia09033 Actinidia chinensis HOM05D000140 ORTHO05D008077 2.5e-157 559.3 436 64.2
Rhsim12G0206500 Rhododendron simsii HOM05D001215 ORTHO05D008077 3.5e-156 555.4 436 62.6
QL05p012092 Quercus lobata HOM05D000140 ORTHO05D008077 1.3e-155 553.5 437 62.5
Gohir.D05G137000 Gossypium hirsutum HOM05D000140 ORTHO05D008077 2.3e-155 552.7 434 62.7
Gohir.A05G135000 Gossypium hirsutum HOM05D000140 ORTHO05D008077 3.0e-155 552.4 434 62.9
Sabra03G0023800 Salix brachista HOM05D000140 ORTHO05D008077 5.1e-155 551.6 434 62.4
TWI31G0962 Tripterygium wilfordii HOM05D000140 ORTHO05D008077 1.1e-154 550.4 436 62.6
Gorai.009G141300 Gossypium raimondii HOM05D000140 ORTHO05D008077 3.3e-154 548.9 434 62.2
TAR624G1234 Trochodendron aralioides HOM05D000140 ORTHO05D008077 7.4e-154 547.7 438 63.5
COL.COLO4_30668 Corchorus olitorius HOM05D000140 ORTHO05D008077 1.4e-152 543.5 469 59.3
GSVIVG01016865001 Vitis vinifera HOM05D000140 ORTHO05D008077 1.8e-152 543.1 432 63.7
Lalb_Chr24g0396441 Lupinus albus HOM05D000140 ORTHO05D008077 4.1e-152 542.0 437 60.4
VMungo1080G0937 Vigna mungo HOM05D000140 ORTHO05D008077 2.0e-151 539.7 436 60.3
RcHm_v2.0_Chr2g0143451 Rosa chinensis HOM05D000140 ORTHO05D008077 3.4e-151 538.9 438 61.0
CSS0012901 Camellia sinensis var. sinensis HOM05D000140 ORTHO05D008077 4.5e-151 538.5 501 55.5
Medtr2g100000 Medicago truncatula HOM05D000140 ORTHO05D008077 7.7e-151 537.7 436 59.2
FAN02G0242 Fragaria x ananassa HOM05D000140 ORTHO05D008077 1.1e-149 533.9 438 60.5
Phvul.005G158700 Phaseolus vulgaris HOM05D000140 ORTHO05D008077 2.5e-149 532.7 435 59.5
FAN14G2243 Fragaria x ananassa HOM05D000140 ORTHO05D008077 3.2e-149 532.3 438 60.5
FAN05G3919 Fragaria x ananassa HOM05D000140 ORTHO05D008077 7.2e-149 531.2 438 60.3
Psat5g292840 Pisum sativum HOM05D000140 ORTHO05D008077 9.4e-149 530.8 436 58.0
FAN09G3885 Fragaria x ananassa HOM05D000140 ORTHO05D008077 1.6e-148 530.0 438 60.5
Glyma.13G349600 Glycine max HOM05D000140 ORTHO05D008077 1.6e-148 530.0 436 58.5
PGR102G2012 Punica granatum HOM05D000140 ORTHO05D008077 7.9e-148 527.7 436 58.5
Cpa.g.sc25.44 Carica papaya HOM05D000140 ORTHO05D008077 1.0e-147 527.3 438 61.4
Lj3g0010439 Lotus japonicus HOM05D000140 ORTHO05D008077 1.4e-147 526.9 436 58.0
Ca_01204_v3 Cicer arietinum L. HOM05D000140 ORTHO05D008077 3.9e-147 525.4 439 57.9
Duzib235G0366 Durio zibethinus HOM05D000140 ORTHO05D008077 5.1e-147 525.0 436 61.2
TPR.G6582 Trifolium pratense HOM05D000140 ORTHO05D008077 2.5e-146 522.7 436 58.0
MD09G1192500 Malus domestica HOM05D000140 ORTHO05D008077 3.3e-146 522.3 438 59.4
Prupe.3G048800 Prunus persica HOM05D000140 ORTHO05D008077 3.3e-146 522.3 438 60.0
ClCG07G013770 Citrullus lanatus HOM05D000140 ORTHO05D008077 4.3e-146 521.9 437 60.0
CsaV3_3G043840 Cucumis sativus L. HOM05D000140 ORTHO05D008077 4.3e-146 521.9 436 60.1
Sed0001524 Sechium edule HOM05D000140 ORTHO05D008077 2.2e-145 519.6 437 60.2
CANSAT56G4101 Cannabis sativa HOM05D000140 ORTHO05D008077 3.1e-144 515.8 439 59.7
Eucgr.J02852 Eucalyptus grandis HOM05D000140 ORTHO05D008077 1.5e-143 513.5 436 57.6
CAN.G825.37 Capsicum annuum HOM05D000140 ORTHO05D008077 2.6e-143 512.7 437 57.9
arahy.Tifrunner.gnm1.ann1.GQ1CY0 Arachis hypogaea HOM05D000140 ORTHO05D008077 1.3e-142 510.4 462 55.6
Oeu011886.1 Olea europaea HOM05D000140 ORTHO05D008077 2.2e-142 509.6 436 59.2
Aqoxy7G04010 Aquilegia oxysepala HOM05D000140 ORTHO05D008077 2.9e-142 509.2 437 57.7
arahy.Tifrunner.gnm1.ann1.3G454N Arachis hypogaea HOM05D000140 ORTHO05D008077 2.9e-142 509.2 461 55.5
ECA232G0751 Erigeron canadensis HOM05D000140 ORTHO05D008077 5.0e-142 508.4 436 59.2
DCAR_016153 Daucus carota HOM05D000140 ORTHO05D008077 6.5e-142 508.1 436 57.6
Nitab4.5_0008454g0020 Nicotiana tabacum HOM05D000140 ORTHO05D008077 6.5e-142 508.1 436 57.1
Nitab4.5_0000255g0220 Nicotiana tabacum HOM05D000140 ORTHO05D008077 3.2e-141 505.8 436 56.7
AT1G72990 Arabidopsis thaliana HOM05D000140 ORTHO05D008077 5.5e-141 505.0 437 57.2
BcaC08g45680 Brassica carinata HOM05D000140 ORTHO05D008077 9.4e-141 504.2 437 57.4
C06p34430 Brassica napus HOM05D000140 ORTHO05D008077 9.4e-141 504.2 437 57.4
THA.LOC104812215 Tarenaya hassleriana HOM05D000140 ORTHO05D008077 1.2e-140 503.8 442 58.4
BolC6t38553H Brassica oleracea HOM05D000140 ORTHO05D008077 2.1e-140 503.1 437 57.7
Lsat_1_v5_gn_0_11160 Lactuca sativa HOM05D000140 ORTHO05D008077 2.7e-140 502.7 426 59.4
Sopen06g022120 Solanum pennellii HOM05D000140 ORTHO05D008077 2.7e-140 502.7 437 57.0
AL2G32740 Arabidopsis lyrata HOM05D000140 ORTHO05D008077 4.7e-140 501.9 437 57.0
Migut.I01031 Erythranthe guttata HOM05D000140 ORTHO05D008077 3.0e-139 499.2 427 59.0
A07p30010 Brassica napus HOM05D000140 ORTHO05D008077 5.1e-139 498.4 437 56.8
BraA07t30639Z Brassica rapa HOM05D000140 ORTHO05D008077 5.1e-139 498.4 437 56.8
Lj5A44G111 Lonicera japonica HOM05D000140 ORTHO05D008077 1.5e-138 496.9 401 60.1
BcaB03g15696 Brassica carinata HOM05D000140 ORTHO05D008077 7.4e-138 494.6 437 56.5
FvH4_6g33540 Fragaria vesca HOM05D000140 ORTHO05D008077 1.1e-136 490.7 438 57.3
HanXRQChr16g0514871 Helianthus annuus HOM05D000140 ORTHO05D008077 1.4e-136 490.3 436 59.2
Nn8g38831 Nelumbo nucifera HOM05D000140 ORTHO05D008077 1.4e-136 490.3 425 56.9
Cc04_g01880 Coffea canephora HOM05D000140 ORTHO05D008077 2.4e-136 489.6 427 57.6
EL10Ac7g16346 Beta vulgaris HOM05D000140 ORTHO05D008077 7.0e-136 488.0 434 55.1
Carub.0002s1975 Capsella rubella HOM05D000140 ORTHO05D008077 1.0e-134 484.2 437 56.3
MBI01_g01259_MAGBIO Magnolia biondii HOM05D000140 ORTHO05D008077 1.7e-134 483.4 437 55.6
Thhalv10018211m.g Eutrema salsugineum HOM05D000140 ORTHO05D008077 8.5e-134 481.1 436 55.3
HanXRQChr05g0140791 Helianthus annuus HOM05D000140 ORTHO05D008077 1.5e-133 480.3 435 57.5
SalBow6G5199 Salvia bowleyana HOM05D000140 ORTHO05D008077 1.5e-133 480.3 451 56.1
Hund18711 Selenicereus undatus HOM05D000140 ORTHO05D008077 1.5e-133 480.3 449 53.9
SalBow6G5580 Salvia bowleyana HOM05D000140 ORTHO05D008077 2.7e-132 476.1 453 55.6
MELO3C025840.2 Cucumis melo HOM05D000140 ORTHO05D008077 3.0e-131 472.6 451 54.8
Aa31LG4G3250 Aethionema arabicum HOM05D000140 ORTHO05D008077 2.2e-129 466.5 422 56.2
Atru.chr1.3740 Acer truncatum HOM05D000140 ORTHO05D008077 2.8e-129 466.1 405 64.2
PSO210G3869 Papaver somniferum HOM05D000140 ORTHO05D008077 7.7e-127 458.0 427 54.1
PSO210G7565 Papaver somniferum HOM05D000140 ORTHO05D008077 5.5e-125 451.8 428 54.2
Zm00001eb294210 Zea mays HOM05D000140 ORTHO05D008077 5.5e-125 451.8 433 54.0
Solyc06g062660.4 Solanum lycopersicum HOM05D000140 ORTHO05D008077 2.7e-124 449.5 409 55.0
Os05g0539400 Oryza sativa ssp. japonica HOM05D000140 ORTHO05D008077 6.3e-121 438.3 433 52.0
Sc15g0000170 Simmondsia chinensis HOM05D000140 ORTHO05D008077 1.4e-115 420.6 385 55.1
Actinidia26056 Actinidia chinensis HOM05D000140 ORTHO05D008077 9.8e-114 414.5 414 54.8
AUR62009830 Chenopodium quinoa HOM05D000140 ORTHO05D008077 8.0e-108 394.8 436 46.8
Peaxi162Scf00207g01364 Petunia axillaris HOM05D000140 ORTHO05D008077 1.4e-107 394.0 425 48.2
ATR0716G096 Amborella trichopoda HOM05D000140 ORTHO05D008077 8.3e-105 384.8 409 48.2
AUR62038142 Chenopodium quinoa HOM05D000140 ORTHO05D008077 9.5e-101 371.3 436 45.6
unitig_0.g871 Utricularia gibba HOM05D000140 ORTHO05D008077 6.4e-97 358.6 407 47.9
PGSC0003DMG400004881 Solanum tuberosum HOM05D000140 ORTHO05D008077 1.6e-87 327.4 262 60.7
HPP92_005527 Vanilla planifolia HOM05D000140 ORTHO05D008077 3.3e-85 319.7 321 50.5
Pp3c13_7050 Physcomitrium patens HOM05D000140 ORTHO05D008077 5.8e-82 308.9 433 41.6
SMO351G0560 Selaginella moellendorffii HOM05D000140 ORTHO05D008077 1.0e-78 298.1 432 40.7
Pp3c26_2000 Physcomitrium patens HOM05D000140 ORTHO05D008077 2.4e-75 287.0 434 38.2
SEGI_34008 Sequoiadendron giganteum HOM05D000140 ORTHO05D008077 4.4e-74 282.7 312 48.1
DCAR_000353 Daucus carota HOM05D000140 ORTHO05D008077 2.8e-60 236.9 181 61.3
CARHR065960 Cardamine hirsuta HOM05D000140 ORTHO05D008077 6.0e-55 219.2 206 52.9
GSVIVG01033176001 Vitis vinifera HOM05D001036 ORTHO05D003968 1.9e-53 214.2 164 64.0
Mapoly0113s0014 Marchantia polymorpha HOM05D000140 ORTHO05D008077 5.3e-51 206.1 279 44.8
Atru.chr1.3754 Acer truncatum HOM05D000140 ORTHO05D008077 1.8e-43 181.0 125 72.0
CDE11G0798 Ceratophyllum demersum HOM05D000140 ORTHO05D008077 9.7e-37 158.7 155 51.6
CBR_g21797 Chara braunii HOM05D000019 ORTHO05D000353 3.7e-36 156.8 278 37.1
Ca_20488_v3 Cicer arietinum L. HOM05D000140 ORTHO05D008077 1.5e-29 134.8 119 54.6
Ca_20489_v3 Cicer arietinum L. HOM05D000057 ORTHO05D008077 1.5e-29 134.8 119 54.6
Ca_28283_v3 Cicer arietinum L. HOM05D000140 ORTHO05D008077 1.5e-29 134.8 119 54.6
CDE06G1291 Ceratophyllum demersum HOM05D000140 ORTHO05D008077 1.3e-28 131.7 120 53.3
Sp5g27950 Schrenkiella parvula HOM05D000140 ORTHO05D008077 4.1e-27 126.7 145 44.1
CBR_g21802 Chara braunii HOM05D000140 ORTHO05D008077 2.0e-10 71.2 116 34.5


User provided reference genes

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