Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 2.1e-135 485.7 251 100.0
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 7.6e-69 264.6 239 62.3
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 2.2e-68 263.1 241 62.2
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 1.2e-66 257.3 232 60.8
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 2.7e-66 256.1 232 61.2
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 4.6e-66 255.4 232 59.9
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 1.0e-65 254.2 232 60.8
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 5.7e-64 248.4 244 56.6
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 1.6e-63 246.9 229 59.0
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 1.1e-62 244.2 225 60.0
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 1.1e-62 244.2 239 58.6
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 3.1e-62 242.7 236 56.8
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 3.1e-62 242.7 233 59.2
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 2.9e-60 236.1 142 89.4
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 3.8e-60 235.7 236 56.4
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 5.0e-60 235.3 247 53.8
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 7.2e-59 231.5 234 55.6
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 9.4e-59 231.1 234 55.1
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 1.2e-58 230.7 226 56.2
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 1.6e-58 230.3 241 55.2
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 2.1e-58 229.9 228 55.3
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 2.7e-58 229.6 235 55.7
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 7.9e-58 228.0 227 56.8
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 7.9e-58 228.0 243 55.1
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 1.0e-57 227.6 228 55.7
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 1.8e-57 226.9 236 53.0
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 1.8e-57 226.9 229 53.3
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 2.3e-57 226.5 239 52.7
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 1.1e-56 224.2 219 56.2
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 1.5e-56 223.8 226 54.4
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 1.5e-56 223.8 232 55.2
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 2.0e-56 223.4 236 54.2
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 2.0e-56 223.4 261 52.5
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 3.3e-56 222.6 226 54.4
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 3.3e-56 222.6 246 53.7
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 5.7e-56 221.9 235 52.8
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 5.7e-56 221.9 235 52.8
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 9.7e-56 221.1 233 53.2
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.7e-55 220.3 237 52.7
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 2.8e-55 219.5 240 52.1
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 3.7e-55 219.2 241 54.4
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 4.8e-55 218.8 242 50.8
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 6.3e-55 218.4 238 50.8
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 6.3e-55 218.4 227 51.5
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 6.3e-55 218.4 235 51.5
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 6.3e-55 218.4 249 55.4
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 8.2e-55 218.0 235 53.2
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 1.1e-54 217.6 233 52.8
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 1.1e-54 217.6 233 52.8
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 1.4e-54 217.2 238 55.5
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 3.1e-54 216.1 236 49.6
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 4.1e-54 215.7 234 51.3
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 5.3e-54 215.3 243 50.6
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 5.3e-54 215.3 240 51.7
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 6.9e-54 214.9 236 51.3
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 6.9e-54 214.9 223 52.5
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 6.9e-54 214.9 236 53.8
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 9.1e-54 214.5 239 51.9
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 9.1e-54 214.5 230 53.0
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.2e-53 214.2 239 50.6
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 2.6e-53 213.0 243 50.2
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 2.6e-53 213.0 240 51.2
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 3.4e-53 212.6 225 53.3
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 4.5e-53 212.2 239 51.9
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 4.5e-53 212.2 239 51.9
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 7.7e-53 211.5 235 51.1
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 7.7e-53 211.5 228 55.7
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 7.7e-53 211.5 243 54.3
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 7.7e-53 211.5 242 52.5
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 1.0e-52 211.1 225 54.2
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.3e-52 210.7 232 51.7
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 1.7e-52 210.3 220 56.4
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.7e-52 210.3 232 53.0
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 1.9e-51 206.8 214 56.1
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 1.9e-51 206.8 233 51.5
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 5.5e-51 205.3 259 48.3
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 1.2e-50 204.1 224 52.7
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 6.1e-50 201.8 232 52.6
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 1.4e-49 200.7 243 49.8
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.4e-49 200.7 236 49.6
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 1.4e-49 200.7 153 64.7
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 1.8e-49 200.3 231 51.5
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 2.3e-49 199.9 220 53.2
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 3.0e-49 199.5 239 50.6
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 3.0e-49 199.5 270 45.9
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 3.0e-49 199.5 252 47.6
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 3.0e-49 199.5 237 51.1
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 3.9e-49 199.1 164 57.9
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 1.5e-48 197.2 217 53.0
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 2.8e-47 193.0 233 49.4
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 2.8e-47 193.0 219 50.7
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 4.8e-47 192.2 212 50.0
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 8.2e-47 191.4 153 62.1
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 5.3e-46 188.7 154 61.0
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 1.6e-45 187.2 227 44.9
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 4.5e-45 185.7 225 50.2
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 1.0e-44 184.5 147 59.9
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 1.7e-44 183.7 159 61.0
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 5.5e-43 178.7 215 49.8
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 8.0e-42 174.9 146 60.3
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 2.6e-40 169.9 239 46.0
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.7e-39 167.2 145 58.6
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.7e-39 167.2 153 55.6
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 1.7e-39 167.2 214 48.6
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 2.8e-39 166.4 215 48.8
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 1.4e-38 164.1 150 55.3
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 7.7e-37 158.3 226 44.2
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 2.2e-36 156.8 134 57.5
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.9e-35 153.7 158 52.5
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 2.6e-32 143.3 142 52.8
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 5.7e-32 142.1 143 56.6
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 1.7e-31 140.6 146 53.4
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 6.3e-31 138.7 170 45.3
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 4.5e-29 132.5 145 47.6
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 6.5e-28 128.6 76 75.0
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 1.9e-27 127.1 132 53.8
Atru.chr1.3690 Acer truncatum HOM05D005904 ORTHO05D007074 2.5e-27 126.7 97 77.3
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 1.6e-26 124.0 111 56.8
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 6.1e-26 122.1 134 48.5
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 4.0e-25 119.4 136 46.3
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 4.0e-25 119.4 134 49.3
Atru.chr1.3684 Acer truncatum HOM05D005904 ORTHO05D007074 2.0e-24 117.1 81 82.7
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 2.8e-23 113.2 150 48.0
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 7.3e-19 98.6 55 76.4
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 1.4e-17 94.4 92 56.5
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 2.9e-15 86.7 98 53.1
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.7e-12 77.4 132 40.9
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 1.0e-09 68.2 53 62.3
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 1.3e-07 61.2 36 75.0
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 2.2e-07 60.5 39 66.7
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 1.4e-06 57.8 151 25.2
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 3.2e-06 56.6 33 75.8


User provided reference genes

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