Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 1.1e-165 586.6 306 100.0
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 2.4e-72 276.6 338 56.5
Atru.chr1.3639 Acer truncatum HOM05D003676 ORTHO05D004262 9.0e-56 221.5 113 99.1
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 1.9e-37 160.6 101 88.1
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 1.2e-31 141.4 342 38.9
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 5.5e-29 132.5 355 38.0
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 7.2e-29 132.1 366 37.7
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 2.3e-27 127.1 324 36.1
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 5.2e-27 125.9 367 36.8
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.5e-26 124.4 350 34.9
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.0e-26 124.0 349 35.0
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 2.0e-26 124.0 321 36.4
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 4.4e-26 122.9 359 35.4
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 7.5e-26 122.1 331 35.0
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 2.8e-25 120.2 328 38.1
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 4.8e-25 119.4 339 36.0
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 8.3e-25 118.6 355 35.5
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 1.4e-24 117.9 340 37.4
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 1.8e-24 117.5 186 50.0
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 7.0e-24 115.5 362 34.5
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 1.6e-23 114.4 353 36.8
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.7e-23 113.6 344 36.9
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 2.7e-23 113.6 374 34.8
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 3.5e-23 113.2 242 43.8
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 3.8e-22 109.8 356 35.1
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 5.0e-22 109.4 357 35.0
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 8.5e-22 108.6 334 35.9
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 1.1e-21 108.2 332 35.5
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 1.9e-21 107.5 338 34.9
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 3.2e-21 106.7 334 35.6
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 5.5e-21 105.9 354 34.5
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 7.2e-21 105.5 372 34.1
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 9.4e-21 105.1 282 37.9
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 1.6e-20 104.4 360 34.4
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 3.6e-20 103.2 318 35.8
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 6.1e-20 102.4 348 33.6
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 8.0e-20 102.1 341 32.3
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 1.0e-19 101.7 182 44.0
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.4e-19 101.3 299 36.1
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 1.5e-18 97.8 359 33.7
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 2.0e-18 97.4 340 34.1
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 2.6e-18 97.1 256 36.3
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 5.7e-18 95.9 375 31.2
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 7.5e-18 95.5 329 35.3
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 9.8e-18 95.1 332 31.9
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 1.7e-17 94.4 335 33.1
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.7e-17 94.4 332 35.8
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 2.2e-17 94.0 350 32.0
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 6.3e-17 92.4 337 34.1
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 6.3e-17 92.4 329 32.5
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 1.1e-16 91.7 331 32.6
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 1.8e-16 90.9 338 33.7
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 2.4e-16 90.5 355 33.0
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 3.1e-16 90.1 353 31.4
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 3.1e-16 90.1 219 39.3
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 3.1e-16 90.1 339 31.9
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 4.1e-16 89.7 375 30.4
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 5.4e-16 89.4 327 31.2
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 7.0e-16 89.0 343 32.7
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 9.1e-16 88.6 327 34.9
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 1.2e-15 88.2 261 35.6
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.2e-15 88.2 338 33.7
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.6e-15 87.8 304 36.2
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.6e-15 87.8 356 32.6
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 2.0e-15 87.4 364 29.9
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 3.5e-15 86.7 332 32.8
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 1.0e-14 85.1 218 39.4
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 8.6e-14 82.0 336 32.1
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 1.1e-13 81.6 235 37.9
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 1.9e-13 80.9 336 30.7
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 2.5e-13 80.5 307 32.9
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 2.5e-13 80.5 322 31.1
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 2.5e-13 80.5 354 32.5
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 2.5e-13 80.5 280 35.7
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 4.2e-13 79.7 333 31.2
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 5.5e-13 79.3 312 29.8
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 5.5e-13 79.3 295 30.5
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 5.5e-13 79.3 346 30.9
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 7.2e-13 79.0 340 30.9
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 7.2e-13 79.0 351 30.8
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 1.6e-12 77.8 218 38.5
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 2.1e-12 77.4 321 32.7
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 3.6e-12 76.6 353 30.3
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 3.6e-12 76.6 286 30.8
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 4.7e-12 76.3 282 33.0
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 8.0e-12 75.5 205 39.5
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 8.0e-12 75.5 183 43.7
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 8.0e-12 75.5 110 52.7
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 8.0e-12 75.5 110 52.7
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 1.0e-11 75.1 351 30.5
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 1.0e-11 75.1 286 32.5
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 1.0e-11 75.1 291 32.6
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 2.3e-11 73.9 263 32.7
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 5.2e-11 72.8 256 33.2
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.8e-11 72.4 319 31.3
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 8.9e-11 72.0 329 32.8
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 1.2e-10 71.6 219 37.0
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.5e-10 71.2 305 32.1
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.5e-10 71.2 325 29.8
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 2.6e-10 70.5 95 52.6
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 3.4e-10 70.1 322 30.1
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 3.4e-10 70.1 187 36.9
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 3.4e-10 70.1 286 31.5
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 3.4e-10 70.1 300 31.3
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 4.4e-10 69.7 261 30.7
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 1.3e-09 68.2 257 31.9
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 1.3e-09 68.2 257 31.9
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 1.7e-09 67.8 238 36.6
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 2.2e-09 67.4 312 30.1
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 3.7e-09 66.6 304 28.9
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 3.7e-09 66.6 294 31.0
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.9e-09 66.2 304 31.2
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.3e-09 65.9 192 40.1
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.1e-08 65.1 192 39.6
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.2e-08 63.5 75 53.3
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.2e-08 63.5 308 30.2
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 3.2e-08 63.5 225 32.9
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.4e-08 62.8 75 53.3
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.4e-08 62.8 75 53.3
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.2e-07 61.6 303 30.4
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 1.6e-07 61.2 333 29.1
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.6e-07 61.2 224 31.7
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 2.0e-07 60.8 152 39.5
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.0e-07 60.8 257 32.3
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 2.0e-07 60.8 343 28.9
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 2.7e-07 60.5 315 30.2
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 3.5e-07 60.1 297 28.6
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 3.5e-07 60.1 201 34.3
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 5.9e-07 59.3 150 40.7
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 5.9e-07 59.3 303 28.1
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 5.9e-07 59.3 183 32.2
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 7.8e-07 58.9 259 30.1
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.0e-06 58.5 332 29.5
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 1.0e-06 58.5 337 30.0
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 1.7e-06 57.8 157 38.9
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.7e-06 57.8 231 33.3
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 2.3e-06 57.4 225 31.1
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 2.9e-06 57.0 155 34.8
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 2.9e-06 57.0 314 29.6
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 3.9e-06 56.6 322 28.6
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 3.9e-06 56.6 316 28.8
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 5.0e-06 56.2 312 29.2
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 5.0e-06 56.2 308 26.6
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 8.6e-06 55.5 177 33.9
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 8.6e-06 55.5 174 35.6


User provided reference genes

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