Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 1.2e-74 283.1 151 100.0
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 2.5e-46 189.1 129 86.8
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 1.2e-37 160.2 101 88.1
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 4.8e-34 148.3 129 73.6
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 1.4e-33 146.7 136 70.6
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 2.4e-33 146.0 133 71.4
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.2e-32 143.7 133 67.7
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 1.2e-32 143.7 133 70.7
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.6e-32 142.5 136 66.9
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 2.6e-32 142.5 135 68.9
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 5.9e-32 141.4 143 65.0
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 7.7e-32 141.0 130 70.8
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 7.7e-32 141.0 133 67.7
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 1.7e-31 139.8 137 67.2
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 5.0e-31 138.3 130 68.5
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 5.0e-31 138.3 140 64.3
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 8.5e-31 137.5 131 68.7
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 8.5e-31 137.5 133 64.7
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 1.4e-30 136.7 132 68.2
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 1.9e-30 136.3 132 68.2
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 2.5e-30 136.0 129 65.9
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 5.5e-30 134.8 133 67.7
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.2e-29 133.7 137 69.3
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 2.7e-29 132.5 129 70.5
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 2.7e-29 132.5 155 58.7
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 4.6e-29 131.7 134 64.2
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 6.1e-29 131.3 137 63.5
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 1.0e-28 130.6 129 69.8
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 1.0e-28 130.6 138 62.3
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 3.0e-28 129.0 137 65.0
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 3.0e-28 129.0 133 64.7
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 1.1e-27 127.1 137 63.5
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 1.5e-27 126.7 129 66.7
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 2.0e-27 126.3 134 64.2
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 3.3e-27 125.6 134 60.4
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 3.3e-27 125.6 129 66.7
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 4.4e-27 125.2 136 63.2
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 7.4e-27 124.4 134 66.4
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.7e-26 123.2 126 65.1
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 1.7e-26 123.2 142 60.6
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 4.8e-26 121.7 129 65.9
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 4.8e-26 121.7 129 65.9
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 8.2e-26 120.9 134 59.0
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 1.1e-25 120.6 136 58.8
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.4e-25 120.2 129 65.1
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.4e-25 119.4 140 55.7
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 2.4e-25 119.4 139 57.6
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 3.1e-25 119.0 144 59.0
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 3.1e-25 119.0 141 61.0
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 4.1e-25 118.6 126 62.7
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 5.3e-25 118.2 134 59.7
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 5.3e-25 118.2 141 58.9
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 6.9e-25 117.9 128 62.5
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 9.1e-25 117.5 125 60.0
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.2e-24 117.1 141 58.2
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.5e-24 116.7 133 58.6
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 2.6e-24 115.9 136 61.8
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 2.6e-24 115.9 123 62.6
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 3.4e-24 115.5 132 57.6
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 3.4e-24 115.5 144 61.8
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 4.5e-24 115.2 134 59.7
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 4.5e-24 115.2 136 55.9
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 5.9e-24 114.8 126 64.3
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.0e-23 114.0 126 61.1
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 1.0e-23 114.0 143 54.5
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.2e-23 112.8 138 59.4
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 3.8e-23 112.1 127 59.8
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 5.0e-23 111.7 154 52.6
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 5.0e-23 111.7 126 60.3
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 5.0e-23 111.7 126 59.5
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 6.5e-23 111.3 125 59.2
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 8.5e-23 110.9 140 55.7
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 1.4e-22 110.2 141 56.7
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 2.5e-22 109.4 136 55.9
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.2e-22 108.6 131 58.8
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.2e-22 108.6 131 58.8
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 4.2e-22 108.6 126 58.7
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 4.2e-22 108.6 133 58.6
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 9.4e-22 107.5 132 59.8
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 1.2e-21 107.1 130 54.6
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 1.6e-21 106.7 130 59.2
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 1.6e-21 106.7 129 61.2
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.7e-21 105.9 126 59.5
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 4.7e-21 105.1 129 58.1
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 1.0e-20 104.0 138 52.9
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 1.8e-20 103.2 100 68.0
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 2.3e-20 102.8 126 55.6
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 2.3e-20 102.8 132 54.5
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 2.3e-20 102.8 132 52.3
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 3.0e-20 102.4 126 53.2
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 6.7e-20 101.3 129 57.4
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 8.8e-20 100.9 126 54.8
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 8.8e-20 100.9 139 53.2
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 2.6e-19 99.4 126 54.8
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 3.3e-19 99.0 136 54.4
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 3.3e-19 99.0 121 56.2
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.4e-19 98.6 127 54.3
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 5.7e-19 98.2 117 57.3
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 5.7e-19 98.2 132 50.8
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.3e-18 97.1 131 55.7
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 1.3e-18 97.1 121 55.4
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 1.3e-18 97.1 118 57.6
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 2.2e-18 96.3 132 54.5
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 2.8e-18 95.9 129 53.5
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 2.8e-18 95.9 123 53.7
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 3.7e-18 95.5 126 53.2
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 3.7e-18 95.5 140 50.7
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 1.8e-17 93.2 130 55.4
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 1.8e-17 93.2 136 49.3
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 3.1e-17 92.4 124 56.5
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 4.1e-17 92.0 130 54.6
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 5.3e-17 91.7 95 62.1
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 7.0e-17 91.3 130 55.4
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.6e-16 90.1 121 50.4
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 2.0e-16 89.7 131 50.4
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 2.0e-16 89.7 134 50.7
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 2.6e-16 89.4 131 51.9
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 7.7e-16 87.8 131 51.1
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 7.7e-16 87.8 82 62.2
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.0e-15 87.4 136 50.0
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.7e-15 86.7 121 50.4
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 1.7e-15 86.7 135 48.1
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.2e-15 86.3 121 50.4
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.2e-15 86.3 116 53.4
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 2.9e-15 85.9 131 50.4
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 2.9e-15 85.9 123 52.0
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 2.9e-15 85.9 118 55.1
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 6.5e-15 84.7 115 51.3
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 8.5e-15 84.3 131 49.6
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 8.5e-15 84.3 115 52.2
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 8.5e-15 84.3 135 48.9
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 8.5e-15 84.3 125 45.6
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 1.5e-14 83.6 119 50.4
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 1.5e-14 83.6 119 50.4
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.5e-14 83.6 116 52.6
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.5e-14 83.6 124 53.2
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 1.5e-14 83.6 125 48.8
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 2.5e-14 82.8 150 43.3
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 3.2e-14 82.4 121 50.4
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 4.2e-14 82.0 112 48.2
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 5.5e-14 81.6 127 48.8
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 5.5e-14 81.6 127 48.8
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 7.2e-14 81.3 117 54.7
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 9.4e-14 80.9 134 47.8
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 1.2e-13 80.5 96 55.2
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 8.0e-13 77.8 129 44.2
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 8.0e-13 77.8 96 54.2
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 8.0e-13 77.8 101 53.5
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 1.4e-12 77.0 116 46.6
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 6.7e-12 74.7 127 44.9
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 5.7e-11 71.6 70 60.0
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 1.3e-10 70.5 68 58.8
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 1.3e-10 70.5 116 47.4
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 1.7e-10 70.1 102 49.0
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 1.7e-10 70.1 68 58.8
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.2e-10 69.7 128 46.1
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.8e-10 69.3 129 48.8
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 3.7e-10 68.9 132 42.4
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 3.1e-09 65.9 130 40.8
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 5.3e-09 65.1 61 62.3
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 1.2e-08 63.9 132 43.9
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 3.5e-08 62.4 42 76.2
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 7.7e-08 61.2 59 59.3
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.7e-07 60.1 59 57.6
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 2.5e-06 56.2 52 61.5


User provided reference genes

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