Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3576 Acer truncatum HOM05D000963 ORTHO05D004715 5.4e-74 280.8 132 100.0
Sed0014585 Sechium edule HOM05D000963 ORTHO05D004715 1.6e-73 279.3 132 99.2
QL10p017079 Quercus lobata HOM05D000963 ORTHO05D004715 4.6e-73 277.7 131 98.5
QL93p0141_0026 Quercus lobata HOM05D000963 ORTHO05D004715 4.6e-73 277.7 131 98.5
Lsat_1_v5_gn_1_88180 Lactuca sativa HOM05D000963 ORTHO05D004715 1.0e-72 276.6 132 98.5
Lsat_1_v5_gn_2_97121 Lactuca sativa HOM05D000963 ORTHO05D004715 1.0e-72 276.6 132 98.5
Lsat_1_v5_gn_9_121741 Lactuca sativa HOM05D000963 ORTHO05D004715 1.0e-72 276.6 132 98.5
Lsat_1_v5_gn_8_139840 Lactuca sativa HOM05D000963 ORTHO05D004715 5.1e-72 274.2 132 97.7
Migut.D01391 Erythranthe guttata HOM05D000963 ORTHO05D004715 8.6e-72 273.5 132 97.0
QL93p0141_0000 Quercus lobata HOM05D000963 ORTHO05D004715 8.6e-72 273.5 131 96.9
COL.COLO4_02154 Corchorus olitorius HOM05D000963 ORTHO05D004715 1.5e-71 272.7 132 97.0
AL9U11970 Arabidopsis lyrata HOM05D000963 ORTHO05D004715 2.5e-71 271.9 132 97.0
C09p40280 Brassica napus HOM05D000963 ORTHO05D004715 2.5e-71 271.9 132 97.0
BolSC44t60816H Brassica oleracea HOM05D000963 ORTHO05D004715 2.5e-71 271.9 132 97.0
BolSC44t60829H Brassica oleracea HOM05D000963 ORTHO05D004715 2.5e-71 271.9 132 97.0
BolSC49t61135H Brassica oleracea HOM05D000963 ORTHO05D004715 2.5e-71 271.9 132 97.0
BraSC103t45422Z Brassica rapa HOM05D000963 ORTHO05D004715 2.5e-71 271.9 132 97.0
BraSC103t45433Z Brassica rapa HOM05D000963 ORTHO05D004715 2.5e-71 271.9 132 97.0
BraSC25t45904Z Brassica rapa HOM05D000963 ORTHO05D004715 2.5e-71 271.9 132 97.0
BraSC25t45917Z Brassica rapa HOM05D000963 ORTHO05D004715 2.5e-71 271.9 132 97.0
Sopen06g015060 Solanum pennellii HOM05D000963 ORTHO05D004715 7.3e-71 270.4 133 97.0
PGSC0003DMG400034831 Solanum tuberosum HOM05D000963 ORTHO05D004715 7.3e-71 270.4 133 97.0
BraSC138t45541Z Brassica rapa HOM05D000963 ORTHO05D004715 1.2e-70 269.6 131 96.2
BolSC29t60541H Brassica oleracea HOM05D000963 ORTHO05D004715 2.8e-70 268.5 132 95.5
BolSC37t60787H Brassica oleracea HOM05D000963 ORTHO05D004715 6.2e-70 267.3 133 96.2
Gohir.1Z049781 Gossypium hirsutum HOM05D000963 ORTHO05D004715 8.1e-70 266.9 132 95.5
BolC9t56918H Brassica oleracea HOM05D000963 ORTHO05D004715 1.1e-69 266.5 132 95.5
BolSC45t60916H Brassica oleracea HOM05D000963 ORTHO05D004715 1.8e-69 265.8 128 96.9
BraSC59t46533Z Brassica rapa HOM05D000963 ORTHO05D004715 4.0e-69 264.6 132 93.9
Gohir.A02G134101 Gossypium hirsutum HOM05D000963 ORTHO05D004715 4.0e-69 264.6 128 96.1
CAN.G929.1 Capsicum annuum HOM05D000963 ORTHO05D004715 8.9e-69 263.5 133 94.7
Lsat_1_v5_gn_2_50801 Lactuca sativa HOM05D000963 ORTHO05D004715 8.9e-69 263.5 131 94.7
Lsat_1_v5_gn_5_181901 Lactuca sativa HOM05D000963 ORTHO05D004715 8.9e-69 263.5 129 95.3
Lsat_1_v5_gn_5_4701 Lactuca sativa HOM05D000963 ORTHO05D004715 8.9e-69 263.5 129 95.3
CAN.G1298.20 Capsicum annuum HOM05D000963 ORTHO05D004715 2.6e-68 261.9 133 94.0
Sed0012027 Sechium edule HOM05D000963 ORTHO05D004715 7.6e-68 260.4 131 94.7
FvH4_c3g00050 Fragaria vesca HOM05D000963 ORTHO05D004715 3.5e-65 251.5 123 95.9
Gohir.D03G074976 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.0e-64 250.0 123 92.7
Sed0006422 Sechium edule HOM05D000963 ORTHO05D004715 1.0e-64 250.0 126 93.7
HPP92_028430 Vanilla planifolia HOM05D000963 ORTHO05D004715 8.7e-64 246.9 132 88.6
ECA074G0007 Erigeron canadensis HOM05D000963 ORTHO05D004715 4.3e-63 244.6 118 97.5
ECA074G0008 Erigeron canadensis HOM05D000963 ORTHO05D004715 4.3e-63 244.6 118 97.5
CAN.G965.10 Capsicum annuum HOM05D000963 ORTHO05D004715 2.1e-62 242.3 133 89.5
BraSC143t45652Z Brassica rapa HOM05D000963 ORTHO05D004715 6.2e-62 240.7 133 88.0
CAN.G1185.10 Capsicum annuum HOM05D000963 ORTHO05D004715 5.3e-61 237.7 130 83.8
Nitab4.5_0008665g0030 Nicotiana tabacum HOM05D000963 ORTHO05D004715 2.2e-59 232.3 123 90.2
Gorai.012G060700 Gossypium raimondii HOM05D000963 ORTHO05D004715 2.9e-59 231.9 118 91.5
C09p39330 Brassica napus HOM05D000963 ORTHO05D004715 4.9e-59 231.1 132 85.6
Gohir.D01G169154 Gossypium hirsutum HOM05D000963 ORTHO05D004715 3.5e-57 224.9 115 93.0
Potri.011G074033 Populus trichocarpa HOM05D000963 ORTHO05D004715 1.8e-56 222.6 106 97.2
Medtr5g080940 Medicago truncatula HOM05D000963 ORTHO05D004715 3.9e-56 221.5 127 83.5
Aqoxy38s008 Aquilegia oxysepala HOM05D000963 ORTHO05D004715 1.5e-55 219.5 106 96.2
Sed0003522 Sechium edule HOM05D000963 ORTHO05D004715 3.3e-55 218.4 110 93.6
CAN.G67.2 Capsicum annuum HOM05D000963 ORTHO05D004715 4.3e-55 218.0 145 77.9
Sabra11G0069300 Salix brachista HOM05D000963 ORTHO05D004715 1.1e-53 213.4 110 91.8
Sed0011513 Sechium edule HOM05D000963 ORTHO05D004715 1.8e-53 212.6 126 83.3
Gohir.A07G151200 Gossypium hirsutum HOM05D000963 ORTHO05D004715 3.1e-53 211.8 106 93.4
FAN13G1706 Fragaria x ananassa HOM05D000963 ORTHO05D004715 6.9e-53 210.7 109 91.7
Gohir.A04G057626 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.6e-52 208.8 106 90.6
Gohir.D04G096676 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.6e-52 208.8 106 91.5
SalBow1G2814 Salvia bowleyana HOM05D000963 ORTHO05D004715 7.6e-52 207.2 108 91.7
SalBow1G5969 Salvia bowleyana HOM05D000963 ORTHO05D004715 7.6e-52 207.2 108 91.7
Gohir.A01G139826 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.7e-51 206.1 132 78.0
Gohir.D04G054150 Gossypium hirsutum HOM05D000963 ORTHO05D004715 8.4e-51 203.8 106 90.6
BraSC59t46506Z Brassica rapa HOM05D000963 ORTHO05D004715 1.1e-50 203.4 102 95.1
arahy.Tifrunner.gnm1.ann1.D5AR02 Arachis hypogaea HOM05D000963 ORTHO05D004715 5.5e-50 201.1 118 83.9
Oeu012821.1 Olea europaea HOM05D000963 ORTHO05D004715 7.1e-50 200.7 132 78.0
Gohir.A05G286366 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.6e-49 199.5 101 93.1
Sc01g0005720 Simmondsia chinensis HOM05D000963 ORTHO05D004715 2.7e-49 198.7 106 89.6
Oeu050315.1 Olea europaea HOM05D000963 ORTHO05D004715 4.6e-49 198.0 97 96.9
HPP92_028419 Vanilla planifolia HOM05D000963 ORTHO05D004715 9.6e-47 190.3 99 88.9
HPP92_028432 Vanilla planifolia HOM05D000963 ORTHO05D004715 9.6e-47 190.3 99 88.9
DCAR_014935 Daucus carota HOM05D000963 ORTHO05D004715 2.8e-46 188.7 90 96.7
HPP92_028383 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.1e-45 186.8 99 87.9
HPP92_028406 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.1e-45 186.8 99 87.9
HPP92_028415 Vanilla planifolia HOM05D000963 ORTHO05D004715 1.1e-45 186.8 99 87.9
BraSC58t46456Z Brassica rapa HOM05D000963 ORTHO05D004715 1.8e-45 186.0 88 96.6
CSS0016818 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D004715 6.9e-45 184.1 132 71.2
arahy.Tifrunner.gnm1.ann1.0S9V2W Arachis hypogaea HOM05D000963 ORTHO05D004715 2.6e-44 182.2 90 94.4
arahy.Tifrunner.gnm1.ann1.56M0GV Arachis hypogaea HOM05D000963 ORTHO05D004715 2.6e-44 182.2 90 94.4
arahy.Tifrunner.gnm1.ann1.E29LBX Arachis hypogaea HOM05D000963 ORTHO05D004715 2.6e-44 182.2 90 94.4
arahy.Tifrunner.gnm1.ann1.NRNC1F Arachis hypogaea HOM05D000963 ORTHO05D004715 2.6e-44 182.2 90 94.4
arahy.Tifrunner.gnm1.ann1.PH4GL6 Arachis hypogaea HOM05D000963 ORTHO05D004715 2.6e-44 182.2 90 94.4
arahy.Tifrunner.gnm1.ann1.RS9AFF Arachis hypogaea HOM05D000963 ORTHO05D004715 2.6e-44 182.2 90 94.4
arahy.Tifrunner.gnm1.ann1.TDDH8C Arachis hypogaea HOM05D000963 ORTHO05D004715 2.6e-44 182.2 90 94.4
arahy.Tifrunner.gnm1.ann1.UGP0DD Arachis hypogaea HOM05D000963 ORTHO05D004715 2.6e-44 182.2 90 94.4
arahy.Tifrunner.gnm1.ann1.WD30LQ Arachis hypogaea HOM05D000963 ORTHO05D004715 2.6e-44 182.2 90 94.4
arahy.Tifrunner.gnm1.ann1.ZA1EMG Arachis hypogaea HOM05D000963 ORTHO05D004715 2.6e-44 182.2 90 94.4
arahy.Tifrunner.gnm1.ann1.54C0KZ Arachis hypogaea HOM05D000963 ORTHO05D004715 7.6e-44 180.6 90 93.3
arahy.Tifrunner.gnm1.ann1.WSE485 Arachis hypogaea HOM05D000963 ORTHO05D004715 1.3e-43 179.9 90 93.3
Gohir.D11G164850 Gossypium hirsutum HOM05D000963 ORTHO05D004715 4.9e-43 177.9 90 94.4
Lsat_1_v5_gn_2_90421 Lactuca sativa HOM05D000963 ORTHO05D004715 7.1e-42 174.1 92 92.4
Dinv39831 Davidia involucrata HOM05D000963 ORTHO05D004715 4.6e-41 171.4 80 97.5
Oeu015131.2 Olea europaea HOM05D000963 ORTHO05D004715 2.3e-40 169.1 95 82.1
Nitab4.5_0012234g0080 Nicotiana tabacum HOM05D000963 ORTHO05D004715 3.9e-40 168.3 107 80.4
CsaV3_2G008200 Cucumis sativus L. HOM05D000963 ORTHO05D004715 1.9e-39 166.0 77 97.4
Actinidia23508 Actinidia chinensis HOM05D000963 ORTHO05D004715 3.3e-39 165.2 87 87.4
arahy.Tifrunner.gnm1.ann1.0QCF99 Arachis hypogaea HOM05D000963 ORTHO05D004715 3.3e-39 165.2 81 93.8
arahy.Tifrunner.gnm1.ann1.6K111H Arachis hypogaea HOM05D000963 ORTHO05D004715 3.3e-39 165.2 81 93.8
arahy.Tifrunner.gnm1.ann1.B9EW81 Arachis hypogaea HOM05D000963 ORTHO05D004715 3.3e-39 165.2 81 93.8
arahy.Tifrunner.gnm1.ann1.NMB5YK Arachis hypogaea HOM05D000963 ORTHO05D004715 3.3e-39 165.2 81 93.8
arahy.Tifrunner.gnm1.ann1.QIDR5S Arachis hypogaea HOM05D000963 ORTHO05D004715 3.3e-39 165.2 81 93.8
Lsat_1_v5_gn_1_109481 Lactuca sativa HOM05D000963 ORTHO05D004715 2.8e-38 162.2 89 83.1
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 1.2e-36 156.8 80 90.0
Nitab4.5_0004137g0020 Nicotiana tabacum HOM05D000963 ORTHO05D004715 7.6e-36 154.1 92 88.0
Gohir.A01G119775 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.3e-35 153.3 80 91.2
Dinv05169 Davidia involucrata HOM05D000963 ORTHO05D004715 2.2e-35 152.5 80 88.8
SabraPtG0005400 Salix brachista HOM05D000963 ORTHO05D004715 5.0e-35 151.4 84 88.1
arahy.Tifrunner.gnm1.ann1.LM30Y3 Arachis hypogaea HOM05D000963 ORTHO05D004715 4.2e-34 148.3 81 84.0
Gohir.D01G023469 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.2e-33 146.7 76 89.5
Gorai.002G027900 Gossypium raimondii HOM05D000963 ORTHO05D004715 1.6e-33 146.4 76 88.2
FAN18G1953 Fragaria x ananassa HOM05D000315 ORTHO05D004100 3.6e-33 145.2 89 78.7
unitig_91.g26522 Utricularia gibba HOM05D000963 ORTHO05D004715 6.1e-33 144.4 67 95.5
unitig_91.g26525 Utricularia gibba HOM05D000963 ORTHO05D004715 6.1e-33 144.4 67 95.5
COL.COLO4_03191 Corchorus olitorius HOM05D000963 ORTHO05D004715 2.3e-32 142.5 96 76.0
Potri.002G263451 Populus trichocarpa HOM05D000963 ORTHO05D004715 3.0e-32 142.1 80 86.2
Glyma.06G274000 Glycine max HOM05D000963 ORTHO05D004715 3.9e-32 141.7 125 63.2
Phvul.003G259600 Phaseolus vulgaris HOM05D000963 ORTHO05D004715 6.7e-32 141.0 88 77.3
Nitab4.5_0007400g0120 Nicotiana tabacum HOM05D000963 ORTHO05D004715 3.3e-31 138.7 93 78.5
Gohir.A04G039030 Gossypium hirsutum HOM05D000963 ORTHO05D004715 2.2e-30 136.0 71 88.7
Cpa.g.sc302.1 Carica papaya HOM05D000963 ORTHO05D004715 4.8e-30 134.8 67 97.0
BolSC46t60965H Brassica oleracea HOM05D000963 ORTHO05D004715 1.1e-29 133.7 66 97.0
BraSC59t46544Z Brassica rapa HOM05D000963 ORTHO05D004715 1.8e-29 132.9 80 81.2
BolSC29t60514H Brassica oleracea HOM05D000963 ORTHO05D004715 4.1e-29 131.7 66 95.5
BolSC29t60553H Brassica oleracea HOM05D000963 ORTHO05D004715 1.5e-28 129.8 64 96.9
Manes.18G094701 Manihot esculenta HOM05D000963 ORTHO05D004715 2.0e-28 129.4 73 84.9
Mapoly0147s0015 Marchantia polymorpha HOM05D000963 ORTHO05D004715 2.6e-28 129.0 123 58.5
BolSC35t60711H Brassica oleracea HOM05D000963 ORTHO05D004715 3.4e-28 128.6 80 78.8
Rhsim12G0135200 Rhododendron simsii HOM05D000963 ORTHO05D004715 4.5e-28 128.3 57 98.2
BolC2t10589H Brassica oleracea HOM05D000963 ORTHO05D004715 1.3e-27 126.7 66 92.4
BolSC45t60901H Brassica oleracea HOM05D000963 ORTHO05D004715 1.3e-27 126.7 80 77.5
BolSC49t61150H Brassica oleracea HOM05D000963 ORTHO05D004715 1.3e-27 126.7 66 92.4
BolC2t10606H Brassica oleracea HOM05D000963 ORTHO05D004715 3.2e-26 122.1 81 76.5
BcaNung01516 Brassica carinata HOM05D000963 ORTHO05D004715 6.1e-25 117.9 57 91.2
Sabra08G0089800 Salix brachista HOM05D000963 ORTHO05D004715 1.8e-24 116.3 92 66.3
VMungo0331G0858 Vigna mungo HOM05D000963 ORTHO05D004715 3.0e-24 115.5 69 76.8
EL10Ac7g17374 Beta vulgaris HOM05D000963 ORTHO05D004715 1.5e-23 113.2 62 88.7
FvH4_7g01961 Fragaria vesca HOM05D000963 ORTHO05D004715 1.5e-23 113.2 123 54.5
EL10Ac7g17381 Beta vulgaris HOM05D000963 ORTHO05D004715 8.2e-22 107.5 62 83.9
Psat3g162200 Pisum sativum HOM05D000963 ORTHO05D004715 3.1e-21 105.5 49 93.9
Sc25g0002020 Simmondsia chinensis HOM05D000963 ORTHO05D004715 2.0e-20 102.8 45 97.8
DCAR_017253 Daucus carota HOM05D000963 ORTHO05D004715 1.3e-19 100.1 58 84.5
Gohir.A01G139250 Gossypium hirsutum HOM05D000963 ORTHO05D004715 1.3e-19 100.1 46 97.8
Hma1.2p1_0051F.1_g029250 Hydrangea macrophylla HOM05D000963 ORTHO05D004715 1.3e-19 100.1 43 97.7
TPR.G27622 Trifolium pratense HOM05D000963 ORTHO05D004715 1.9e-18 96.3 46 91.3
BolSC43t60811H Brassica oleracea HOM05D000963 ORTHO05D004715 2.5e-18 95.9 46 97.8
FAN01G1433 Fragaria x ananassa HOM05D000963 ORTHO05D004715 4.2e-18 95.1 53 88.7
Oeu054713.1 Olea europaea HOM05D000963 ORTHO05D004715 1.2e-17 93.6 48 93.8
Medtr1g105230 Medicago truncatula HOM05D000963 ORTHO05D004715 2.1e-17 92.8 42 95.2
BraSC179t45779Z Brassica rapa HOM05D000963 ORTHO05D004715 6.1e-17 91.3 44 97.7
Oeu033793.1 Olea europaea HOM05D001982 ORTHO05D003938 1.0e-16 90.5 54 81.5
Lj4g0000207 Lotus japonicus HOM05D000963 ORTHO05D004715 2.3e-16 89.4 41 100.0
FAN06G2610 Fragaria x ananassa HOM05D000963 ORTHO05D004715 3.0e-16 89.0 61 70.5
arahy.Tifrunner.gnm1.ann1.HN8ZWX Arachis hypogaea HOM05D000963 ORTHO05D004715 3.3e-15 85.5 41 95.1
CAN.G1594.2 Capsicum annuum HOM05D016096 ORTHO05D016167 4.4e-15 85.1 42 92.9
Thecc.09G087300 Theobroma cacao HOM05D000963 ORTHO05D004715 4.4e-15 85.1 43 95.3
Psat5g119040 Pisum sativum HOM05D000963 ORTHO05D004715 7.4e-15 84.3 84 57.1
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 2.0e-12 76.3 40 90.0
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 2.0e-12 76.3 40 90.0
Gorai.002G200300 Gossypium raimondii HOM05D000963 ORTHO05D004715 5.9e-12 74.7 35 91.4
Sc21g0003630 Simmondsia chinensis HOM05D000556 ORTHO05D000404 2.7e-09 65.9 46 73.9
Migut.N00577 Erythranthe guttata HOM05D000963 ORTHO05D004715 1.0e-08 63.9 51 72.5


User provided reference genes

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