Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 1.2e-183 646.4 326 100.0
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 3.4e-117 425.6 319 64.3
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 4.9e-116 421.8 328 63.1
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 1.4e-115 420.2 319 63.6
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 4.1e-115 418.7 319 63.9
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 2.0e-114 416.4 285 68.8
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 5.9e-114 414.8 272 71.3
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 7.8e-114 414.5 319 65.8
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 7.8e-114 414.5 319 65.8
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.7e-113 413.3 320 65.3
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 1.7e-113 413.3 337 59.9
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.8e-113 412.1 286 68.2
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 8.6e-113 411.0 319 63.6
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.9e-112 409.8 247 73.3
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.9e-112 409.8 326 62.3
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.3e-112 409.1 286 67.5
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.3e-112 409.1 286 67.5
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 5.6e-112 408.3 278 68.7
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 9.5e-112 407.5 319 63.3
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 4.7e-111 405.2 329 60.8
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 6.1e-111 404.8 320 61.6
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 6.1e-111 404.8 319 61.1
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 6.1e-111 404.8 321 62.0
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 1.2e-109 400.6 319 61.1
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 1.5e-109 400.2 325 61.8
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 5.7e-109 398.3 288 65.6
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 9.8e-109 397.5 280 69.3
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 1.3e-108 397.1 370 54.6
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.9e-108 395.2 333 58.6
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 6.4e-108 394.8 333 58.3
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 1.1e-107 394.0 328 61.6
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 1.4e-107 393.7 318 62.9
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 3.2e-107 392.5 323 58.5
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 4.1e-107 392.1 324 60.2
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 9.2e-107 391.0 279 65.9
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.2e-106 390.6 299 64.9
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 1.6e-106 390.2 286 63.6
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 4.6e-106 388.7 267 67.4
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 7.8e-106 387.9 280 65.7
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 1.0e-105 387.5 322 61.8
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 1.3e-105 387.1 292 64.0
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 1.3e-105 387.1 274 64.6
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 3.9e-105 385.6 279 65.2
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 5.0e-105 385.2 326 58.9
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 6.6e-105 384.8 285 63.2
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 1.5e-104 383.6 258 71.3
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 2.5e-104 382.9 314 59.2
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 3.3e-104 382.5 275 65.1
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 4.3e-104 382.1 321 59.5
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 5.6e-104 381.7 234 73.1
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 5.6e-104 381.7 297 62.6
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 9.5e-104 380.9 325 58.2
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 4.7e-103 378.6 291 62.5
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 6.2e-103 378.3 292 63.4
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 1.4e-102 377.1 322 57.5
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 5.2e-102 375.2 326 57.4
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 6.8e-102 374.8 279 61.6
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 1.2e-101 374.0 293 58.7
CiPaw.05G262100 Carya illinoinensis HOM05D004727 ORTHO05D005788 2.0e-101 373.2 229 75.1
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 7.5e-101 371.3 279 61.3
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 1.3e-100 370.5 302 62.6
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 1.7e-100 370.2 386 52.6
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 3.7e-100 369.0 324 58.0
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 4.9e-100 368.6 319 58.3
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 4.9e-100 368.6 246 66.3
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 8.3e-100 367.9 318 58.8
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 8.3e-100 367.9 286 62.9
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 1.1e-99 367.5 321 57.6
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 1.1e-99 367.5 361 55.4
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 1.1e-99 367.5 299 60.2
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 2.4e-99 366.3 299 60.2
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 3.2e-99 365.9 319 58.3
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 3.2e-99 365.9 324 57.7
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 5.4e-99 365.2 322 58.7
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 7.0e-99 364.8 248 69.0
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 2.0e-98 363.2 322 57.1
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 4.6e-98 362.1 291 60.8
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 4.6e-98 362.1 320 57.5
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 7.8e-98 361.3 291 60.8
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 3.9e-97 359.0 323 57.6
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 3.9e-97 359.0 315 56.2
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 3.9e-97 359.0 270 63.7
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 5.0e-97 358.6 278 64.4
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 5.0e-97 358.6 284 59.5
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 5.0e-97 358.6 267 63.3
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 1.1e-96 357.5 289 61.6
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 1.9e-96 356.7 268 63.4
MELO3C006936.2 Cucumis melo HOM05D004727 ORTHO05D005788 2.1e-95 353.2 327 58.1
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 3.6e-95 352.4 292 57.9
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 3.6e-95 352.4 292 57.9
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 4.7e-95 352.1 348 54.3
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 4.0e-94 349.0 245 65.7
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.0e-94 349.0 255 65.1
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.2e-94 348.6 340 53.2
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 1.5e-93 347.1 263 62.7
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 2.0e-93 346.7 289 57.1
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 7.5e-93 344.7 255 64.7
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 7.5e-93 344.7 265 61.5
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 2.2e-92 343.2 245 65.3
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 3.7e-92 342.4 198 78.3
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 3.2e-91 339.3 269 58.7
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 7.1e-91 338.2 261 61.7
Lalb_Chr19g0130651 Lupinus albus HOM05D004727 ORTHO05D005788 9.2e-91 337.8 258 62.0
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 2.1e-90 336.7 295 57.6
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 4.6e-90 335.5 264 61.7
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 6.0e-90 335.1 316 55.1
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 7.8e-90 334.7 232 66.8
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 1.3e-89 334.0 334 52.7
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 6.6e-89 331.6 292 59.6
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 1.6e-87 327.0 280 58.9
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 8.1e-87 324.7 323 52.3
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 1.8e-86 323.6 282 56.4
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 9.2e-83 311.2 361 47.4
HPP92_025401 Vanilla planifolia HOM05D004727 ORTHO05D005788 1.2e-82 310.8 223 65.5
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 2.8e-79 299.7 196 74.0
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 1.4e-78 297.4 207 68.1
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 9.0e-78 294.7 250 55.2
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 4.9e-76 288.9 280 54.6
AUR62036451 Chenopodium quinoa HOM05D004727 ORTHO05D005788 1.3e-73 280.8 238 59.7
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 1.3e-73 280.8 256 52.7
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 3.6e-71 272.7 267 52.1
FAN03G2629 Fragaria x ananassa HOM05D004727 ORTHO05D005788 1.9e-67 260.4 213 59.2
AUR62017096 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.4e-67 260.0 212 60.8
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 1.1e-64 251.1 237 51.9
MBI12_g08716_MAGBIO Magnolia biondii HOM05D004727 ORTHO05D005788 4.3e-64 249.2 194 64.4
QL09p012782 Quercus lobata HOM05D004727 ORTHO05D005788 1.4e-62 244.2 153 71.9
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 1.8e-62 243.8 233 49.4
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 1.8e-62 243.8 233 49.4
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 2.2e-60 236.9 164 67.1
Peaxi162Scf00444g00021 Petunia axillaris HOM05D004727 ORTHO05D005788 3.5e-58 229.6 213 56.3
Cre11.g476150 Chlamydomonas reinhardtii HOM05D004727 ORTHO05D005788 3.3e-56 223.0 255 43.5
Actinidia31840 Actinidia chinensis HOM05D004727 ORTHO05D005788 3.7e-55 219.5 138 70.3
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 4.5e-53 212.6 161 64.0
AUR62036407 Chenopodium quinoa HOM05D004727 ORTHO05D005788 7.9e-50 201.8 213 52.6
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 2.3e-49 200.3 192 52.6
DCAR_024607 Daucus carota HOM05D004727 ORTHO05D005788 3.0e-49 199.9 159 61.6
DCAR_008880 Daucus carota HOM05D001628 ORTHO05D001568 1.9e-43 180.6 116 70.7
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 4.2e-43 179.5 237 39.2
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 1.5e-40 171.0 131 63.4
PRCOL_00002776 Prasinoderma coloniale HOM05D004727 ORTHO05D005788 7.4e-40 168.7 311 35.7
arahy.Tifrunner.gnm1.ann1.FZN7A9 Arachis hypogaea HOM05D004727 ORTHO05D005788 8.2e-39 165.2 193 46.1
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 1.4e-38 164.5 166 54.8
SEGI_30519 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 6.1e-34 149.1 108 62.0
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 5.1e-33 146.0 150 52.0
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 5.5e-27 125.9 111 56.8
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.8e-22 110.9 249 31.3
SEGI_06548 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 2.6e-21 107.1 76 61.8
Ciclev10006767m.g Citrus clementina HOM05D004727 ORTHO05D005788 3.5e-21 106.7 77 64.9
SHI13754 Sapria himalayana HOM05D004727 ORTHO05D005788 5.9e-21 105.9 106 47.2
TWI39G0716 Tripterygium wilfordii HOM05D001943 ORTHO05D001969 1.9e-19 100.9 71 64.8
Mapoly1114s0001 Marchantia polymorpha HOM05D004727 ORTHO05D005788 3.6e-18 96.7 96 50.0
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 5.2e-17 92.8 173 39.9
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 4.1e-14 83.2 74 58.1
Medtr4g012780 Medicago truncatula HOM05D004727 ORTHO05D005788 1.9e-11 74.3 36 88.9
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 8.8e-09 65.5 102 43.1
Hund04787 Selenicereus undatus HOM05D021542 ORTHO05D383482 3.4e-08 63.5 181 28.7
AL7G26190 Arabidopsis lyrata HOM05D004727 ORTHO05D079975 1.4e-06 58.2 34 76.5


User provided reference genes

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