Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.33 Acer truncatum HOM05D007656 ORTHO05D008529 9.5e-122 440.3 234 100.0
Atru.chr6.33 Acer truncatum HOM05D007656 ORTHO05D008529 1.8e-43 180.3 162 53.7
Ciclev10003516m.g Citrus clementina HOM05D007656 ORTHO05D008529 5.7e-42 175.3 139 58.3
Manes.10G012300 Manihot esculenta HOM05D000510 ORTHO05D001548 4.7e-36 155.6 142 52.1
Cpa.g.sc87.8 Carica papaya HOM05D000317 ORTHO05D008529 6.1e-36 155.2 140 54.3
Duzib093G1087 Durio zibethinus HOM05D007656 ORTHO05D008529 1.8e-35 153.7 131 51.9
Cpa.g.sc87.14 Carica papaya HOM05D000317 ORTHO05D008529 6.7e-35 151.8 140 52.9
COL.COLO4_29685 Corchorus olitorius HOM05D007656 ORTHO05D008529 8.8e-35 151.4 137 48.2
Manes.10G012500 Manihot esculenta HOM05D000510 ORTHO05D001548 1.1e-34 151.0 139 53.2
Manes.10G012600 Manihot esculenta HOM05D000510 ORTHO05D001548 1.1e-34 151.0 139 53.2
Manes.10G012400 Manihot esculenta HOM05D000510 ORTHO05D001548 3.3e-34 149.4 138 52.9
Duzib132G0971 Durio zibethinus HOM05D007656 ORTHO05D008529 2.8e-33 146.4 135 45.9
Ciclev10024498m.g Citrus clementina HOM05D007656 ORTHO05D008529 6.3e-33 145.2 133 52.6
Ciclev10002149m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.1e-32 144.4 133 50.4
Ciclev10021347m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.4e-32 144.1 133 49.6
Manes.10G131300 Manihot esculenta HOM05D007656 ORTHO05D008529 1.4e-32 144.1 143 49.0
Ciclev10003101m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.4e-32 143.3 144 49.3
Thecc.02G023700 Theobroma cacao HOM05D007656 ORTHO05D008529 3.1e-32 142.9 126 51.6
Atru.chr5.3422 Acer truncatum HOM05D007656 ORTHO05D008529 1.2e-31 141.0 142 50.7
Manes.07G014101 Manihot esculenta HOM05D007656 ORTHO05D008529 3.5e-31 139.4 133 48.9
Manes.01G113600 Manihot esculenta HOM05D007656 ORTHO05D008529 5.9e-31 138.7 131 50.4
Manes.07G014200 Manihot esculenta HOM05D007656 ORTHO05D008529 5.9e-31 138.7 131 49.6
A06p46380 Brassica napus HOM05D000005 ORTHO05D000294 2.2e-30 136.7 138 42.8
BraA06t27502Z Brassica rapa HOM05D000005 ORTHO05D000294 2.2e-30 136.7 138 42.8
BcaC06g34402 Brassica carinata HOM05D000005 ORTHO05D008529 2.9e-30 136.3 150 40.0
C07p29060 Brassica napus HOM05D001366 ORTHO05D008529 2.9e-30 136.3 150 40.0
BolC7t43445H Brassica oleracea HOM05D001366 ORTHO05D008529 2.9e-30 136.3 150 40.0
Ciclev10024525m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.9e-30 136.3 132 49.2
BcaC06g31517 Brassica carinata HOM05D000005 ORTHO05D000294 3.8e-30 136.0 138 42.8
BolC8t51984H Brassica oleracea HOM05D007656 ORTHO05D008529 3.2e-29 132.9 138 42.0
Manes.10G131200 Manihot esculenta HOM05D007656 ORTHO05D008529 4.2e-29 132.5 134 47.0
Thecc.02G023800 Theobroma cacao HOM05D007656 ORTHO05D008529 5.5e-29 132.1 153 44.4
Thhalv10002051m.g Eutrema salsugineum HOM05D000005 ORTHO05D008529 7.2e-29 131.7 132 43.9
Thecc.02G020200 Theobroma cacao HOM05D007656 ORTHO05D008529 1.2e-28 131.0 133 45.9
CARHR110670 Cardamine hirsuta HOM05D000005 ORTHO05D008529 1.6e-28 130.6 137 40.9
Thecc.02G020900 Theobroma cacao HOM05D007656 ORTHO05D008529 2.7e-28 129.8 133 46.6
AT2G20142 Arabidopsis thaliana HOM05D000005 ORTHO05D000294 6.1e-28 128.6 136 41.9
THA.LOC104820128 Tarenaya hassleriana HOM05D007656 ORTHO05D008529 6.1e-28 128.6 131 45.0
Thecc.02G021500 Theobroma cacao HOM05D007656 ORTHO05D008529 1.0e-27 127.9 133 46.6
Ciclev10003708m.g Citrus clementina HOM05D007656 ORTHO05D008529 3.0e-27 126.3 111 54.1
Thecc.02G020700 Theobroma cacao HOM05D007656 ORTHO05D008529 2.6e-26 123.2 137 43.8
CARHR110660 Cardamine hirsuta HOM05D000005 ORTHO05D008529 4.4e-26 122.5 137 38.7
AL3G47945 Arabidopsis lyrata HOM05D000005 ORTHO05D000294 7.5e-26 121.7 126 43.7
Carub.0003s3445 Capsella rubella HOM05D000005 ORTHO05D000294 2.8e-25 119.8 139 40.3
COL.COLO4_30650 Corchorus olitorius HOM05D007656 ORTHO05D008529 2.8e-25 119.8 146 39.0
Thecc.02G020400 Theobroma cacao HOM05D007656 ORTHO05D008529 3.7e-25 119.4 126 46.8
Ciclev10003595m.g Citrus clementina HOM05D007656 ORTHO05D008529 4.8e-25 119.0 102 55.9
FAN15G0049 Fragaria x ananassa HOM05D007656 ORTHO05D008529 8.2e-25 118.2 132 42.4
Manes.10G119600 Manihot esculenta HOM05D000138 ORTHO05D008529 1.1e-24 117.9 134 44.0
Thecc.02G020000 Theobroma cacao HOM05D007656 ORTHO05D008529 1.1e-24 117.9 133 42.9
FvH4_2g06570 Fragaria vesca HOM05D007656 ORTHO05D008529 1.4e-24 117.5 132 42.4
Manes.10G119500 Manihot esculenta HOM05D000138 ORTHO05D000078 3.1e-24 116.3 134 44.0
Manes.07G116400 Manihot esculenta HOM05D007656 ORTHO05D008529 4.1e-24 115.9 134 41.8
Potri.015G125950 Populus trichocarpa HOM05D000521 ORTHO05D008529 5.3e-24 115.5 135 43.0
Ciclev10002893m.g Citrus clementina HOM05D007656 ORTHO05D008529 2.0e-23 113.6 105 51.4
Prupe.8G120400 Prunus persica HOM05D000005 ORTHO05D000012 2.7e-23 113.2 146 39.7
Thecc.01G158100 Theobroma cacao HOM05D007656 ORTHO05D008529 1.5e-21 107.5 130 40.8
FAN21G1592 Fragaria x ananassa HOM05D000005 ORTHO05D008529 5.5e-21 105.5 129 43.4
Prupe.5G012300 Prunus persica HOM05D007656 ORTHO05D008529 7.2e-21 105.1 132 43.2
Prupe.8G119800 Prunus persica HOM05D000005 ORTHO05D000012 7.2e-21 105.1 134 40.3
FvH4_2g36090 Fragaria vesca HOM05D000005 ORTHO05D008529 1.6e-20 104.0 129 43.4
Prupe.1G197200 Prunus persica HOM05D007656 ORTHO05D008529 2.7e-20 103.2 128 43.8
Prupe.5G012500 Prunus persica HOM05D007656 ORTHO05D008529 3.6e-20 102.8 129 44.2
MD15G1057200 Malus domestica HOM05D000521 ORTHO05D008529 4.7e-20 102.4 129 41.1
RcHm_v2.0_Chr6g0276291 Rosa chinensis HOM05D000005 ORTHO05D008529 4.7e-20 102.4 129 42.6
Prupe.8G119700 Prunus persica HOM05D007656 ORTHO05D008529 6.1e-20 102.1 134 42.5
Prupe.5G012700 Prunus persica HOM05D007656 ORTHO05D008529 8.0e-20 101.7 129 43.4
RcHm_v2.0_Chr6g0258611 Rosa chinensis HOM05D007656 ORTHO05D008529 1.0e-19 101.3 126 40.5
RcHm_v2.0_Chr6g0276271 Rosa chinensis HOM05D000005 ORTHO05D008529 1.0e-19 101.3 136 39.7
MD06G1218400 Malus domestica HOM05D000306 ORTHO05D008529 4.0e-19 99.4 167 35.9
Ciclev10003163m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.5e-18 97.4 114 44.7
TWI53G0295 Tripterygium wilfordii HOM05D000694 ORTHO05D008529 1.5e-18 97.4 129 36.4
RcHm_v2.0_Chr6g0276251 Rosa chinensis HOM05D000005 ORTHO05D008529 2.0e-18 97.1 129 41.1
MD07G1045600 Malus domestica HOM05D000009 ORTHO05D000008 4.4e-18 95.9 137 35.0
FvH4_2g14140 Fragaria vesca HOM05D000005 ORTHO05D008529 5.7e-18 95.5 129 41.1
Duzib213G0740 Durio zibethinus HOM05D007656 ORTHO05D008529 7.5e-18 95.1 134 32.8
CARHR290800 Cardamine hirsuta HOM05D007656 ORTHO05D008529 9.8e-18 94.7 135 36.3
FAN24G2886 Fragaria x ananassa HOM05D000005 ORTHO05D008529 2.8e-17 93.2 128 39.1
BraA09t37029Z Brassica rapa HOM05D000005 ORTHO05D018617 3.7e-17 92.8 141 36.9
BcaB07g31565 Brassica carinata HOM05D007656 ORTHO05D008529 4.8e-17 92.4 133 36.8
BcaB07g31570 Brassica carinata HOM05D007656 ORTHO05D008529 4.8e-17 92.4 133 36.8
BcaB07g31574 Brassica carinata HOM05D007656 ORTHO05D008529 4.8e-17 92.4 133 36.8
FvH4_2g06640 Fragaria vesca HOM05D007656 ORTHO05D008529 4.8e-17 92.4 128 39.1
MD00G1172900 Malus domestica HOM05D000009 ORTHO05D000008 6.3e-17 92.0 136 36.8
Ciclev10003970m.g Citrus clementina HOM05D007656 ORTHO05D008529 1.4e-16 90.9 91 44.0
Prupe.8G120300 Prunus persica HOM05D000005 ORTHO05D000012 1.4e-16 90.9 143 35.7
BolC9t54555H Brassica oleracea HOM05D000005 ORTHO05D018617 1.8e-16 90.5 141 36.2
Sp5g20860 Schrenkiella parvula HOM05D000005 ORTHO05D000294 1.8e-16 90.5 150 33.3
A09p13770 Brassica napus HOM05D000141 ORTHO05D001860 7.0e-16 88.6 141 34.8
BcaB01g05192 Brassica carinata HOM05D000005 ORTHO05D018617 9.1e-16 88.2 137 37.2
Prupe.5G011800 Prunus persica HOM05D007656 ORTHO05D008529 9.1e-16 88.2 131 38.2
Manes.12G099400 Manihot esculenta HOM05D000009 ORTHO05D000008 1.2e-15 87.8 140 31.4
Potri.018G023600 Populus trichocarpa HOM05D007656 ORTHO05D008529 1.2e-15 87.8 139 35.3
Prupe.5G011700 Prunus persica HOM05D007656 ORTHO05D008529 1.2e-15 87.8 131 36.6
MD07G1045400 Malus domestica HOM05D000009 ORTHO05D000008 1.6e-15 87.4 142 35.2
Sabra18G0026200 Salix brachista HOM05D007656 ORTHO05D008529 2.0e-15 87.0 161 31.1
C03p10340 Brassica napus HOM05D000005 ORTHO05D018617 2.7e-15 86.7 137 37.2
BolC3t13513H Brassica oleracea HOM05D000005 ORTHO05D018617 2.7e-15 86.7 137 37.2
BraA03t10209Z Brassica rapa HOM05D000005 ORTHO05D018617 2.7e-15 86.7 137 37.2
Duzib264G0127 Durio zibethinus HOM05D007656 ORTHO05D008529 2.7e-15 86.7 100 41.0
Sabra18G0026100 Salix brachista HOM05D007656 ORTHO05D008529 2.7e-15 86.7 158 32.3
FvH4_2g36100 Fragaria vesca HOM05D000005 ORTHO05D029394 3.5e-15 86.3 143 35.0
Prupe.4G127700 Prunus persica HOM05D007656 ORTHO05D008529 3.5e-15 86.3 128 39.8
FvH4_2g14130 Fragaria vesca HOM05D007656 ORTHO05D029394 4.5e-15 85.9 143 34.3
Prupe.5G012400 Prunus persica HOM05D007656 ORTHO05D008529 5.9e-15 85.5 131 35.9
Thecc.02G021400 Theobroma cacao HOM05D007656 ORTHO05D008529 7.7e-15 85.1 81 49.4
BcaC04g22696 Brassica carinata HOM05D000005 ORTHO05D018617 1.0e-14 84.7 141 34.8
C09p16450 Brassica napus HOM05D000141 ORTHO05D001860 1.0e-14 84.7 141 34.8
BraA08t32207Z Brassica rapa HOM05D000005 ORTHO05D008529 3.8e-14 82.8 141 32.6
MD05G1139600 Malus domestica HOM05D000494 ORTHO05D008529 3.8e-14 82.8 133 32.3
Thecc.07G066400 Theobroma cacao HOM05D000521 ORTHO05D008529 6.5e-14 82.0 129 31.0
Cpa.g.sc48.191 Carica papaya HOM05D007656 ORTHO05D008529 1.1e-13 81.3 131 35.1
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 1.5e-13 80.9 145 32.4
Thhalv10015989m.g Eutrema salsugineum HOM05D000005 ORTHO05D008529 1.9e-13 80.5 135 36.3
Sabra19G0010500 Salix brachista HOM05D007656 ORTHO05D008529 2.5e-13 80.1 144 31.9
Potri.001G007501 Populus trichocarpa HOM05D007656 ORTHO05D008529 9.5e-13 78.2 132 29.5
FvH4_2g06610 Fragaria vesca HOM05D000005 ORTHO05D008529 1.2e-12 77.8 156 32.1
MD07G1044900 Malus domestica HOM05D007656 ORTHO05D008529 2.1e-12 77.0 123 35.8
Sabra19G0012000 Salix brachista HOM05D007656 ORTHO05D008529 2.1e-12 77.0 142 30.3
FAN24G2255 Fragaria x ananassa HOM05D007656 ORTHO05D008529 2.8e-12 76.6 115 34.8
FAN20G3034 Fragaria x ananassa HOM05D000005 ORTHO05D029394 4.7e-12 75.9 143 32.2
Sabra19G0011800 Salix brachista HOM05D007656 ORTHO05D008529 4.7e-12 75.9 147 30.6
MD15G1057100 Malus domestica HOM05D007656 ORTHO05D008529 1.0e-11 74.7 93 38.7
MD03G1201200 Malus domestica HOM05D007656 ORTHO05D008529 4.0e-11 72.8 127 34.6
Prupe.4G212800 Prunus persica HOM05D007656 ORTHO05D008529 8.8e-11 71.6 127 33.1
Sabra19G0001900 Salix brachista HOM05D007656 ORTHO05D008529 1.5e-10 70.9 133 31.6
Atru.chr5.1729 Acer truncatum HOM05D005783 ORTHO05D007042 3.4e-10 69.7 51 66.7
RcHm_v2.0_Chr5g0039471 Rosa chinensis HOM05D007656 ORTHO05D030061 3.4e-10 69.7 141 29.8
Prupe.8G120000 Prunus persica HOM05D007656 ORTHO05D008529 4.4e-10 69.3 128 29.7
Ciclev10004000m.g Citrus clementina HOM05D007656 ORTHO05D008529 7.5e-10 68.6 66 45.5
Sabra19G0011600 Salix brachista HOM05D007656 ORTHO05D008529 1.8e-08 63.9 138 28.3
RcHm_v2.0_Chr5g0039451 Rosa chinensis HOM05D007656 ORTHO05D030061 2.4e-08 63.5 125 30.4
MD11G1218200 Malus domestica HOM05D007656 ORTHO05D008529 3.1e-08 63.2 97 39.2
Manes.04G013200 Manihot esculenta HOM05D000548 ORTHO05D008529 1.6e-07 60.8 179 26.8
Sabra19G0012300 Salix brachista HOM05D002390 ORTHO05D002846 1.6e-07 60.8 127 31.5
RcHm_v2.0_Chr6g0258551 Rosa chinensis HOM05D007656 ORTHO05D008529 4.5e-07 59.3 144 29.9
RcHm_v2.0_Chr1g0372601 Rosa chinensis HOM05D007656 ORTHO05D008529 7.8e-07 58.5 76 40.8
TWI18G1447 Tripterygium wilfordii HOM05D000008 ORTHO05D413543 1.3e-06 57.8 126 29.4
Potri.T044600 Populus trichocarpa HOM05D000101 ORTHO05D000089 1.7e-06 57.4 132 28.0
Prupe.4G212900 Prunus persica HOM05D007656 ORTHO05D008529 2.3e-06 57.0 108 30.6
TWI18G0941 Tripterygium wilfordii HOM05D010260 ORTHO05D008529 2.9e-06 56.6 135 28.1


User provided reference genes

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