Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 4.6e-48 194.1 92 100.0
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 7.5e-22 107.1 93 60.2
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 4.1e-20 101.3 88 56.8
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 4.1e-20 101.3 89 57.3
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 5.4e-20 100.9 88 53.4
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 5.4e-20 100.9 88 53.4
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 7.0e-20 100.5 88 53.4
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 7.0e-20 100.5 93 55.9
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 3.5e-19 98.2 89 57.3
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 4.5e-19 97.8 95 52.6
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 4.5e-19 97.8 94 56.4
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 5.9e-19 97.4 95 52.6
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 7.7e-19 97.1 95 54.7
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 1.9e-17 92.4 88 54.5
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 2.5e-17 92.0 86 48.8
Atru.chr1.3245 Acer truncatum HOM05D005672 ORTHO05D003038 5.5e-17 90.9 100 48.0
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 9.5e-17 90.1 96 51.0
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 4.7e-16 87.8 89 51.7
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 8.0e-16 87.0 93 46.2
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 2.3e-15 85.5 92 48.9
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 2.3e-15 85.5 90 47.8
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 8.8e-15 83.6 88 48.9
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.2e-14 83.2 89 44.9
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 1.2e-14 83.2 99 46.5
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.5e-14 82.8 86 48.8
Ciclev10027446m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.0e-14 82.4 86 46.5
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 2.0e-14 82.4 90 47.8
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 3.4e-14 81.6 96 41.7
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 3.4e-14 81.6 89 44.9
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 4.4e-14 81.3 93 44.1
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 4.4e-14 81.3 94 46.8
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 5.7e-14 80.9 94 46.8
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 7.5e-14 80.5 94 46.8
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.7e-13 79.3 91 42.9
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 2.2e-13 79.0 85 47.1
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 4.9e-13 77.8 85 48.2
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 6.3e-13 77.4 92 44.6
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 1.4e-12 76.3 90 46.7
Ciclev10027058m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.8e-12 75.9 85 45.9
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 3.1e-12 75.1 96 44.8
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 3.1e-12 75.1 96 44.8
PGR102G1467 Punica granatum HOM05D005672 ORTHO05D003038 5.4e-12 74.3 106 42.5
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 7.0e-12 73.9 95 41.1
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 1.2e-11 73.2 96 43.8
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 1.6e-11 72.8 95 40.0
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 2.7e-11 72.0 80 46.2
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 3.5e-11 71.6 85 41.2
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 5.9e-11 70.9 98 42.9
MSTRG.22696 Avicennia marina HOM05D005672 ORTHO05D003038 7.8e-11 70.5 90 42.2
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 7.8e-11 70.5 102 38.2
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 7.8e-11 70.5 98 42.9
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 7.8e-11 70.5 107 42.1
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 1.0e-10 70.1 86 41.9
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 1.0e-10 70.1 85 40.0
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 1.3e-10 69.7 98 42.9
PGSC0003DMG400016538 Solanum tuberosum HOM05D005672 ORTHO05D003038 1.3e-10 69.7 98 42.9
SGA_v2.0_scaffold5G02600 Striga asiatica HOM05D005672 ORTHO05D003038 1.7e-10 69.3 78 43.6
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 2.9e-10 68.6 55 56.4
Duzib235G0878 Durio zibethinus HOM05D005672 ORTHO05D003038 2.9e-10 68.6 102 37.3
HanXRQChr14g0455911 Helianthus annuus HOM05D005672 ORTHO05D003038 2.9e-10 68.6 101 42.6
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 3.8e-10 68.2 90 43.3
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 6.6e-10 67.4 102 41.2
HanXRQChr10g0314951 Helianthus annuus HOM05D005672 ORTHO05D003038 1.1e-09 66.6 97 41.2
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 1.1e-09 66.6 93 38.7
ECA234G3627 Erigeron canadensis HOM05D005672 ORTHO05D003038 1.5e-09 66.2 72 51.4
Prupe.3G072600 Prunus persica HOM05D005672 ORTHO05D003038 1.5e-09 66.2 83 41.0
GSVIVG01017351001 Vitis vinifera HOM05D009909 ORTHO05D011748 1.5e-09 66.2 92 33.7
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 2.5e-09 65.5 85 38.8
Lsat_1_v5_gn_5_129980 Lactuca sativa HOM05D005672 ORTHO05D003038 5.6e-09 64.3 100 39.0
ClCG09G002220 Citrullus lanatus HOM05D005672 ORTHO05D003038 7.3e-09 63.9 76 47.4
COL.COLO4_26662 Corchorus olitorius HOM05D005672 ORTHO05D003038 7.3e-09 63.9 96 39.6
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 7.3e-09 63.9 104 33.7
PSO339G4707 Papaver somniferum HOM05D007482 ORTHO05D003038 9.5e-09 63.5 95 37.9
PSO339G0096 Papaver somniferum HOM05D007482 ORTHO05D003038 1.2e-08 63.2 88 39.8
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 1.6e-08 62.8 101 38.6
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 3.6e-08 61.6 91 36.3
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 3.6e-08 61.6 99 35.4
unitig_21.g20351 Utricularia gibba HOM05D005672 ORTHO05D003038 4.7e-08 61.2 92 37.0
FvH4_6g30990 Fragaria vesca HOM05D005672 ORTHO05D003038 6.1e-08 60.8 88 43.2
Nn8g39244 Nelumbo nucifera HOM05D005672 ORTHO05D003038 6.1e-08 60.8 94 36.2
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 8.0e-08 60.5 95 33.7
PGR031G0360 Punica granatum HOM05D005672 ORTHO05D003038 8.0e-08 60.5 102 41.2
PGR031G3744 Punica granatum HOM05D005672 ORTHO05D003038 8.0e-08 60.5 102 41.2
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 1.0e-07 60.1 97 35.1
Thhalv10009569m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 1.0e-07 60.1 95 38.9
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 1.4e-07 59.7 102 36.3
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 1.4e-07 59.7 100 39.0
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 1.8e-07 59.3 85 40.0
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.8e-07 59.3 97 43.3
Nn2g11778 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.8e-07 59.3 95 40.0
MELO3C023361.2 Cucumis melo HOM05D005672 ORTHO05D003038 4.0e-07 58.2 90 38.9
MELO3C028179.2 Cucumis melo HOM05D028203 ORTHO05D029165 4.0e-07 58.2 90 40.0
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 4.0e-07 58.2 90 37.8
Migut.I00852 Erythranthe guttata HOM05D005672 ORTHO05D003038 4.0e-07 58.2 81 38.3
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 4.0e-07 58.2 97 34.0
Potri.003G056450 Populus trichocarpa HOM05D005672 ORTHO05D003038 5.2e-07 57.8 89 37.1
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 6.8e-07 57.4 96 36.5
MELO3C030573.2 Cucumis melo HOM05D005672 ORTHO05D003038 8.9e-07 57.0 89 41.6
PGR031G0657 Punica granatum HOM05D005672 ORTHO05D003038 1.2e-06 56.6 102 40.2
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 1.2e-06 56.6 98 31.6
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.5e-06 56.2 96 30.2
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 1.5e-06 56.2 100 35.0
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 1.5e-06 56.2 99 36.4
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 1.5e-06 56.2 99 35.4
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 1.5e-06 56.2 89 34.8
A05p29150 Brassica napus HOM05D007482 ORTHO05D003038 2.0e-06 55.8 100 35.0
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 2.0e-06 55.8 100 36.0
Duzib192G0249 Durio zibethinus HOM05D005672 ORTHO05D003038 2.0e-06 55.8 79 41.8
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 2.0e-06 55.8 98 32.7
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 2.6e-06 55.5 98 30.6
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 2.6e-06 55.5 98 32.7
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 3.4e-06 55.1 92 33.7
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 3.4e-06 55.1 104 33.7
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 3.4e-06 55.1 83 37.3
ClCG09G002270 Citrullus lanatus HOM05D005672 ORTHO05D003038 3.4e-06 55.1 73 37.0
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 4.4e-06 54.7 88 35.2
BraA06t26175Z Brassica rapa HOM05D007482 ORTHO05D003038 4.4e-06 54.7 88 35.2
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 5.7e-06 54.3 88 36.4
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 5.7e-06 54.3 88 35.2
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 5.7e-06 54.3 88 35.2
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 5.7e-06 54.3 88 36.4
BolC3t18270H Brassica oleracea HOM05D007482 ORTHO05D003038 5.7e-06 54.3 88 35.2
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 5.7e-06 54.3 88 36.4
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 5.7e-06 54.3 88 36.4
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 9.8e-06 53.5 88 35.2
DCAR_026309 Daucus carota HOM05D005672 ORTHO05D003038 9.8e-06 53.5 103 33.0


User provided reference genes

Program Settings