Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 0.0e+00 1384.4 720 100.0
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 5.2e-296 1020.8 753 73.7
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 1.1e-274 949.9 744 69.2
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 2.0e-271 939.1 743 67.3
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 6.0e-268 927.5 741 67.3
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 9.9e-263 910.2 747 65.6
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 7.9e-260 900.6 746 66.2
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 1.9e-258 896.0 745 65.8
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 9.6e-258 893.6 708 67.9
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 1.3e-257 893.3 745 66.2
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 1.6e-257 892.9 738 64.1
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 2.8e-257 892.1 755 64.2
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 2.4e-256 889.0 741 66.1
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 2.6e-255 885.6 750 63.2
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.9e-254 882.1 740 63.4
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.9e-254 881.3 738 63.7
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 3.2e-253 878.6 741 65.0
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 2.7e-252 875.5 710 67.3
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.0e-251 873.6 705 65.1
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.3e-250 868.2 738 62.5
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 3.4e-247 858.6 778 62.1
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 2.2e-246 855.9 800 59.8
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 8.5e-246 854.0 778 61.8
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 2.7e-244 849.0 744 63.4
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 3.0e-243 845.5 752 62.6
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 5.3e-240 834.7 736 63.0
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 5.9e-239 831.2 774 59.9
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 2.9e-238 828.9 735 61.8
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 5.5e-237 824.7 768 61.2
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 4.6e-236 821.6 768 61.1
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 8.8e-235 817.4 738 60.6
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 1.1e-234 817.0 796 58.2
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 4.1e-232 808.5 733 60.4
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 7.7e-231 804.3 759 60.7
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 1.1e-229 800.4 634 67.7
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 7.2e-229 797.7 730 60.0
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 1.2e-228 797.0 734 60.8
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 2.3e-227 792.7 735 61.4
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 5.7e-226 788.1 757 58.9
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 1.6e-223 780.0 824 56.4
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 2.6e-223 779.2 756 59.4
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 3.2e-221 772.3 734 60.4
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 3.2e-221 772.3 738 58.9
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 3.2e-221 772.3 745 58.3
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 5.5e-221 771.5 845 54.8
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 9.4e-221 770.8 755 59.5
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 1.2e-220 770.4 694 62.2
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 4.0e-219 765.4 815 54.5
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 6.7e-219 764.6 845 54.2
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 8.8e-219 764.2 752 58.1
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 1.2e-218 763.8 741 58.8
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 1.5e-218 763.5 825 53.2
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 9.7e-218 760.8 735 59.0
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 3.7e-217 758.8 801 56.8
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 8.2e-217 757.7 696 60.3
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 1.2e-215 753.8 802 54.9
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 1.3e-214 750.4 834 52.4
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 1.7e-214 750.0 749 58.1
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 2.9e-214 749.2 809 53.3
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 5.0e-214 748.4 818 53.2
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 8.5e-214 747.7 730 56.6
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 3.2e-213 745.7 661 61.7
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 4.2e-213 745.3 774 55.9
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 5.5e-213 745.0 763 56.4
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 2.1e-212 743.0 818 52.3
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 3.6e-212 742.3 739 57.0
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 8.0e-212 741.1 707 59.5
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 8.0e-212 741.1 818 52.2
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.0e-211 740.7 803 53.9
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.4e-211 740.3 739 57.4
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 2.3e-211 739.6 745 58.1
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 1.2e-210 737.3 768 54.7
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 1.2e-210 737.3 737 57.7
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 3.4e-210 735.7 771 55.6
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 4.4e-210 735.3 739 57.2
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 5.7e-210 734.9 727 56.9
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 2.8e-209 732.6 745 56.4
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 1.8e-208 729.9 744 56.2
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 2.0e-207 726.5 723 56.8
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 3.8e-206 722.2 728 56.3
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 8.6e-206 721.1 779 53.7
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 1.1e-205 720.7 729 56.1
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 1.5e-205 720.3 826 51.8
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 9.5e-205 717.6 730 56.7
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 1.8e-203 713.4 586 64.8
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 2.3e-203 713.0 785 52.0
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 8.3e-201 704.5 732 56.3
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 1.1e-200 704.1 738 56.2
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 5.4e-200 701.8 736 54.8
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 7.0e-200 701.4 729 56.0
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 5.9e-199 698.4 732 56.3
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 1.0e-198 697.6 734 55.7
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 2.3e-198 696.4 730 54.5
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 1.1e-197 694.1 730 55.9
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 3.3e-197 692.6 804 51.5
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 1.2e-196 690.6 741 53.6
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.6e-196 690.3 775 53.4
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 2.1e-196 689.9 818 50.1
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 6.1e-196 688.3 707 57.3
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 5.2e-195 685.3 729 55.6
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 1.1e-192 677.6 632 57.4
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 5.4e-192 675.2 746 52.9
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 1.6e-191 673.7 744 53.1
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 3.5e-191 672.5 728 53.8
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 6.0e-191 671.8 598 58.5
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 1.5e-189 667.2 775 51.0
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.1e-187 661.0 844 48.1
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 1.2e-178 630.9 697 53.4
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 2.0e-178 630.2 707 54.2
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.5e-173 613.2 659 53.9
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 3.1e-171 606.3 621 53.0
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.9e-168 597.0 440 66.8
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 1.9e-157 560.5 845 42.4
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 5.6e-157 558.9 804 44.9
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 4.5e-154 549.3 735 46.7
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 1.3e-150 537.7 833 42.4
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 2.3e-150 537.0 751 45.3
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.1e-144 518.1 494 57.7
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.3e-137 494.6 752 42.3
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 1.8e-131 474.2 498 53.6
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 1.4e-115 421.4 755 38.1
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 6.5e-105 386.0 755 36.8
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 4.4e-101 373.2 579 40.2
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 5.7e-93 346.3 480 42.9
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 5.4e-91 339.7 310 56.1
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 9.8e-85 318.9 485 39.0
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.4e-83 313.2 479 39.0
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 9.2e-83 312.4 487 40.2
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.2e-77 295.4 482 37.3
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.2e-77 295.4 482 37.3
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 6.4e-76 289.7 516 42.8
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.4e-75 287.7 687 32.0
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 9.2e-75 285.8 467 38.3
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.0e-73 282.3 603 33.7
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 1.7e-73 281.6 592 39.7
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.6e-72 276.6 585 33.8
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 1.1e-67 262.3 382 43.7
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 1.3e-52 212.2 196 49.5
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.3e-44 185.7 202 54.0
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 7.1e-43 179.9 390 41.0
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 4.9e-28 130.6 92 63.0
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 2.0e-21 108.6 413 31.5
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 5.0e-20 104.0 208 34.1
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 9.3e-19 99.8 72 65.3
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 3.9e-17 94.4 81 50.6
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 6.5e-12 77.0 53 60.4
Actinidia08821 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.6e-10 72.4 317 32.2
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 3.6e-10 71.2 68 38.2
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 5.1e-09 67.4 74 40.5
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 5.1e-09 67.4 74 40.5
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.3e-08 64.3 77 33.8
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 1.7e-07 62.4 76 48.7
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 2.2e-07 62.0 50 58.0
Ah.06g184670 Amaranthus hybridus HOM05D004705 ORTHO05D005595 6.3e-07 60.5 45 64.4


User provided reference genes

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