Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 8.5e-35 149.8 78 100.0
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 2.2e-30 135.2 90 83.3
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 9.8e-23 109.8 86 68.6
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 6.3e-22 107.1 89 66.3
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 1.4e-21 105.9 82 70.7
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 1.4e-21 105.9 88 63.6
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 5.4e-21 104.0 89 64.0
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 9.1e-21 103.2 82 67.1
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.7e-20 101.7 88 62.5
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 2.7e-20 101.7 82 67.1
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 4.5e-20 100.9 87 65.5
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 4.5e-20 100.9 81 66.7
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 4.5e-20 100.9 89 64.0
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 7.7e-20 100.1 87 65.5
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 7.7e-20 100.1 82 65.9
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 7.7e-20 100.1 89 64.0
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 1.0e-19 99.8 82 65.9
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 1.0e-19 99.8 86 66.3
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 1.3e-19 99.4 81 65.4
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 1.7e-19 99.0 78 69.2
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 1.7e-19 99.0 82 67.1
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 1.7e-19 99.0 90 62.2
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 2.9e-19 98.2 81 64.2
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 3.8e-19 97.8 82 62.2
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 3.8e-19 97.8 86 62.8
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 5.0e-19 97.4 82 63.4
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 5.0e-19 97.4 82 62.2
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 6.6e-19 97.1 87 62.1
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 6.6e-19 97.1 86 64.0
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 1.1e-18 96.3 87 62.1
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 1.1e-18 96.3 87 62.1
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 1.9e-18 95.5 82 63.4
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 1.9e-18 95.5 82 63.4
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 1.9e-18 95.5 81 61.7
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.9e-18 95.5 81 61.7
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 1.9e-18 95.5 82 63.4
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 2.5e-18 95.1 82 62.2
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 2.5e-18 95.1 79 64.6
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 2.5e-18 95.1 81 63.0
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 2.5e-18 95.1 81 60.5
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 2.5e-18 95.1 81 64.2
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 3.3e-18 94.7 77 66.2
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 3.3e-18 94.7 79 64.6
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 3.3e-18 94.7 81 61.7
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 3.3e-18 94.7 81 63.0
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 3.3e-18 94.7 73 68.5
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 3.3e-18 94.7 79 64.6
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 4.2e-18 94.4 78 65.4
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 4.2e-18 94.4 78 65.4
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 4.2e-18 94.4 78 65.4
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 4.2e-18 94.4 78 65.4
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 4.2e-18 94.4 88 59.1
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 5.5e-18 94.0 86 61.6
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 7.2e-18 93.6 80 62.5
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 9.5e-18 93.2 79 64.6
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 1.2e-17 92.8 89 59.6
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.2e-17 92.8 102 52.0
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.2e-17 92.8 81 59.3
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.2e-17 92.8 81 59.3
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.2e-17 92.8 81 61.7
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 1.6e-17 92.4 79 62.0
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 1.6e-17 92.4 76 64.5
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 1.6e-17 92.4 82 61.0
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 1.6e-17 92.4 89 59.6
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 1.6e-17 92.4 80 62.5
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 1.6e-17 92.4 79 62.0
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 2.1e-17 92.0 78 62.8
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 2.1e-17 92.0 80 58.8
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 2.1e-17 92.0 82 59.8
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 2.1e-17 92.0 94 59.6
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 2.8e-17 91.7 81 61.7
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 2.8e-17 91.7 79 62.0
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 2.8e-17 91.7 78 62.8
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 2.8e-17 91.7 78 62.8
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 2.8e-17 91.7 78 62.8
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 2.8e-17 91.7 78 62.8
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 3.6e-17 91.3 79 62.0
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 3.6e-17 91.3 79 62.0
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 4.7e-17 90.9 79 62.0
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 6.1e-17 90.5 54 79.6
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 6.1e-17 90.5 107 49.5
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 6.1e-17 90.5 81 60.5
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 6.1e-17 90.5 81 60.5
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.0e-16 89.7 81 60.5
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 1.0e-16 89.7 75 64.0
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 1.4e-16 89.4 86 57.0
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 1.4e-16 89.4 95 52.6
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 2.3e-16 88.6 82 57.3
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 2.3e-16 88.6 76 64.5
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 3.0e-16 88.2 89 55.1
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 3.0e-16 88.2 81 59.3
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 4.0e-16 87.8 82 56.1
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 4.0e-16 87.8 74 63.5
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 4.0e-16 87.8 75 64.0
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 4.0e-16 87.8 81 58.0
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 8.9e-16 86.7 78 57.7
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 1.2e-15 86.3 79 59.5
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 1.2e-15 86.3 87 56.3
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 1.2e-15 86.3 55 76.4
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 1.5e-15 85.9 75 62.7
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 2.0e-15 85.5 78 59.0
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 2.0e-15 85.5 78 59.0
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 2.6e-15 85.1 70 65.7
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 4.4e-15 84.3 81 59.3
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 1.3e-14 82.8 100 50.0
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 1.3e-14 82.8 69 63.8
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 1.7e-14 82.4 77 59.7
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 2.9e-14 81.6 74 59.5
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 2.9e-14 81.6 61 68.9
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 1.1e-13 79.7 81 54.3
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 1.1e-13 79.7 89 53.9
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 1.4e-13 79.3 48 75.0
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 5.4e-13 77.4 81 53.1
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 7.8e-12 73.6 45 77.8
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 2.3e-11 72.0 45 75.6
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 2.3e-11 72.0 45 75.6
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 2.3e-11 72.0 45 75.6
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 2.9e-11 71.6 41 80.5
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 8.6e-11 70.1 45 73.3
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 4.3e-10 67.8 45 68.9
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 1.8e-08 62.4 65 53.8
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 2.9e-06 55.1 66 45.5


User provided reference genes

Program Settings