Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 5.6e-43 177.2 88 100.0
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 4.6e-37 157.5 79 98.7
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 3.0e-36 154.8 79 97.5
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 4.3e-27 124.4 78 71.8
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.2e-24 116.3 78 64.1
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 8.4e-23 110.2 78 62.8
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.1e-22 109.8 78 60.3
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 1.1e-22 109.8 78 64.1
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.6e-21 105.9 78 59.0
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 1.3e-20 102.8 79 64.6
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.3e-20 102.1 78 57.7
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 5.1e-20 100.9 78 55.1
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 5.1e-20 100.9 78 55.1
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 5.1e-20 100.9 78 59.0
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.1e-19 99.8 78 57.7
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.5e-19 99.4 78 56.4
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 1.5e-19 99.4 78 53.8
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 2.5e-19 98.6 78 56.4
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 3.3e-19 98.2 78 53.8
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 3.3e-19 98.2 78 56.4
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 4.3e-19 97.8 78 55.1
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 4.3e-19 97.8 79 60.8
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 5.7e-19 97.4 78 51.3
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 5.7e-19 97.4 78 56.4
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 7.4e-19 97.1 78 55.1
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 1.3e-18 96.3 78 60.3
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 1.3e-18 96.3 78 57.7
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 1.3e-18 96.3 78 57.7
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.3e-18 96.3 78 52.6
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.3e-18 96.3 78 55.1
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.6e-18 95.9 78 55.1
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.2e-18 95.5 78 59.0
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.2e-18 95.5 78 59.0
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 3.7e-18 94.7 78 53.8
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 4.8e-18 94.4 78 53.8
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 4.8e-18 94.4 79 50.6
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 4.8e-18 94.4 79 50.6
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 6.3e-18 94.0 78 57.7
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 6.3e-18 94.0 78 55.1
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 8.2e-18 93.6 78 52.6
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.1e-17 93.2 75 56.0
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 2.4e-17 92.0 90 46.7
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 2.4e-17 92.0 78 56.4
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 3.1e-17 91.7 78 52.6
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 4.1e-17 91.3 78 52.6
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 5.3e-17 90.9 78 52.6
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 6.9e-17 90.5 78 50.0
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 6.9e-17 90.5 78 52.6
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 6.9e-17 90.5 78 52.6
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 9.0e-17 90.1 90 45.6
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 9.0e-17 90.1 55 69.1
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 9.0e-17 90.1 78 50.0
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 9.0e-17 90.1 78 52.6
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 1.5e-16 89.4 78 48.7
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.5e-16 89.4 78 46.2
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.0e-16 89.0 78 48.7
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.0e-16 89.0 78 48.7
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 2.0e-16 89.0 78 48.7
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 2.0e-16 89.0 78 48.7
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.0e-16 89.0 80 55.0
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 2.6e-16 88.6 78 55.1
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 2.6e-16 88.6 78 55.1
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.6e-16 88.6 78 55.1
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 3.4e-16 88.2 78 56.4
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 3.4e-16 88.2 78 50.0
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.4e-16 88.2 78 50.0
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.4e-16 88.2 78 50.0
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.4e-16 88.2 78 50.0
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.4e-16 88.2 78 50.0
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 3.4e-16 88.2 78 55.1
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 3.4e-16 88.2 75 52.0
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 4.5e-16 87.8 78 53.8
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 4.5e-16 87.8 78 53.8
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 4.5e-16 87.8 78 53.8
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 5.9e-16 87.4 78 53.8
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 1.0e-15 86.7 78 50.0
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.3e-15 86.3 78 52.6
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.9e-15 85.1 78 53.8
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 3.8e-15 84.7 78 47.4
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 3.8e-15 84.7 78 50.0
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 5.0e-15 84.3 75 49.3
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 6.5e-15 84.0 78 48.7
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 8.5e-15 83.6 78 47.4
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 8.5e-15 83.6 78 47.4
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 8.5e-15 83.6 78 48.7
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 8.5e-15 83.6 78 53.8
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 1.4e-14 82.8 78 50.0
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.4e-14 82.8 78 47.4
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 3.2e-14 81.6 79 44.3
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 3.2e-14 81.6 78 46.2
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 7.2e-14 80.5 79 44.3
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 7.2e-14 80.5 78 48.7
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 7.2e-14 80.5 78 46.2
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 7.2e-14 80.5 78 46.2
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 7.2e-14 80.5 78 46.2
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 1.2e-13 79.7 82 46.3
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 1.2e-13 79.7 78 46.2
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 1.2e-13 79.7 78 46.2
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 2.1e-13 79.0 78 43.6
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 2.7e-13 78.6 80 48.8
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.6e-13 78.2 78 46.2
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 3.6e-13 78.2 79 45.6
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 6.1e-13 77.4 80 46.2
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 7.9e-13 77.0 39 89.7
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 1.0e-12 76.6 78 44.9
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 1.4e-12 76.3 80 45.0
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 1.8e-12 75.9 78 46.2
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.3e-12 75.5 78 43.6
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 2.3e-12 75.5 79 40.5
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 3.0e-12 75.1 78 43.6
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 5.1e-12 74.3 78 43.6
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 1.1e-11 73.2 78 42.3
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 2.0e-11 72.4 78 48.7
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.5e-11 72.0 78 41.0
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 2.5e-11 72.0 76 40.8
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 2.5e-11 72.0 78 42.3
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.3e-11 71.6 90 38.9
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 4.3e-11 71.2 78 37.2
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 5.7e-11 70.9 78 33.3
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 5.7e-11 70.9 90 38.9
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 5.7e-11 70.9 80 41.2
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 5.7e-11 70.9 80 41.2
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 7.4e-11 70.5 90 38.9
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 7.4e-11 70.5 73 46.6
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 9.7e-11 70.1 78 38.5
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 1.3e-10 69.7 78 37.2
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 1.3e-10 69.7 78 37.2
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.7e-10 69.3 78 39.7
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 1.7e-10 69.3 90 41.1
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 2.2e-10 68.9 93 40.9
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 6.3e-10 67.4 80 41.2
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 6.3e-10 67.4 70 48.6
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 6.3e-10 67.4 90 40.0
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 8.2e-10 67.0 79 41.8
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.1e-09 66.6 78 37.2
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 1.1e-09 66.6 80 40.0
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 1.1e-09 66.6 80 40.0
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 1.4e-09 66.2 80 46.2
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 1.8e-09 65.9 78 34.6
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 5.3e-09 64.3 79 29.1
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 5.3e-09 64.3 80 46.2
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 5.3e-09 64.3 80 41.2
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 6.9e-09 63.9 83 39.8
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 9.1e-09 63.5 79 35.4
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 9.1e-09 63.5 80 43.8
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 9.1e-09 63.5 64 45.3
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 1.2e-08 63.2 83 39.8
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 2.0e-08 62.4 80 38.8
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 2.0e-08 62.4 80 38.8
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 2.6e-08 62.0 80 38.8
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 2.6e-08 62.0 80 38.8
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 2.6e-08 62.0 80 38.8
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 2.6e-08 62.0 71 36.6
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 5.9e-08 60.8 80 40.0
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 5.9e-08 60.8 80 40.0
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.3e-07 59.7 78 32.1
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 1.7e-07 59.3 79 36.7
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 2.2e-07 58.9 94 35.1
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 2.2e-07 58.9 94 35.1
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 8.5e-07 57.0 81 35.8
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 1.4e-06 56.2 54 44.4
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 1.4e-06 56.2 91 31.9
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 4.2e-06 54.7 38 57.9
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 7.2e-06 53.9 78 37.2
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 7.2e-06 53.9 80 38.8
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 7.2e-06 53.9 80 40.0


User provided reference genes

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