Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.2949 Acer truncatum HOM05D004202 ORTHO05D005021 2.5e-151 538.9 261 100.0
Thecc.06G024900 Theobroma cacao HOM05D004202 ORTHO05D005021 4.9e-107 391.7 242 81.0
Manes.04G112600 Manihot esculenta HOM05D004202 ORTHO05D005021 3.5e-105 385.6 223 82.1
Manes.11G056900 Manihot esculenta HOM05D004202 ORTHO05D005021 6.0e-105 384.8 238 78.2
Prupe.3G087500 Prunus persica HOM05D004202 ORTHO05D005021 1.0e-104 384.0 216 84.7
Eucgr.F03877 Eucalyptus grandis HOM05D004202 ORTHO05D005021 1.8e-104 383.3 239 79.1
TWI18G0582 Tripterygium wilfordii HOM05D004202 ORTHO05D005021 1.8e-104 383.3 213 84.5
RcHm_v2.0_Chr2g0135261 Rosa chinensis HOM05D004202 ORTHO05D005021 2.3e-104 382.9 220 82.7
TPR.G38651 Trifolium pratense HOM05D004202 ORTHO05D005021 3.0e-104 382.5 215 87.0
CiPaw.01G248300 Carya illinoinensis HOM05D004202 ORTHO05D005021 3.9e-104 382.1 218 83.0
Duzib235G0370 Durio zibethinus HOM05D004202 ORTHO05D005021 3.9e-104 382.1 224 82.6
Ciclev10026224m.g Citrus clementina HOM05D004202 ORTHO05D005021 6.7e-104 381.3 263 73.0
MD17G1212200 Malus domestica HOM05D004202 ORTHO05D005021 6.7e-104 381.3 232 79.3
COL.COLO4_11948 Corchorus olitorius HOM05D004202 ORTHO05D005021 8.7e-104 380.9 252 77.4
LjContig00542g0021230 Lotus japonicus HOM05D004202 ORTHO05D005021 8.7e-104 380.9 213 84.5
Psat7g257200 Pisum sativum HOM05D004202 ORTHO05D005021 8.7e-104 380.9 214 86.0
FAN09G0069 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.5e-103 380.2 214 84.1
Haze_16560 Corylus avellana HOM05D004202 ORTHO05D005021 2.5e-103 379.4 252 75.4
Potri.001G204100 Populus trichocarpa HOM05D004202 ORTHO05D005021 3.3e-103 379.0 232 78.4
FvH4_6g29670 Fragaria vesca HOM05D004202 ORTHO05D005021 5.6e-103 378.3 214 83.6
FAN05G3204 Fragaria x ananassa HOM05D004202 ORTHO05D005021 5.6e-103 378.3 214 83.6
Cfa001960 Carpinus fangiana HOM05D004202 ORTHO05D005021 2.8e-102 375.9 244 77.0
Medtr4g010120 Medicago truncatula HOM05D004202 ORTHO05D005021 3.7e-102 375.6 227 80.2
Phvul.010G156400 Phaseolus vulgaris HOM05D004202 ORTHO05D005021 4.8e-102 375.2 227 81.5
VMungo0331G0004 Vigna mungo HOM05D004202 ORTHO05D005021 6.2e-102 374.8 214 84.6
QL05p029813 Quercus lobata HOM05D004202 ORTHO05D005021 8.2e-102 374.4 214 84.1
Gohir.A06G185500 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.1e-101 374.0 250 74.0
CARHR090910 Cardamine hirsuta HOM05D004202 ORTHO05D005021 2.4e-101 372.9 240 76.7
Aa31LG8G3020 Aethionema arabicum HOM05D004202 ORTHO05D005021 4.0e-101 372.1 246 73.6
Sed0008120 Sechium edule HOM05D004202 ORTHO05D005021 5.3e-101 371.7 249 75.5
THA.LOC104810509 Tarenaya hassleriana HOM05D004202 ORTHO05D005021 6.9e-101 371.3 240 78.3
Glyma.07G029800 Glycine max HOM05D004202 ORTHO05D005021 9.0e-101 370.9 256 73.4
CANSAT56G4089 Cannabis sativa HOM05D004202 ORTHO05D005021 1.5e-100 370.2 211 82.9
ClCG07G012460 Citrullus lanatus HOM05D004202 ORTHO05D005021 2.0e-100 369.8 236 75.8
Lalb_Chr01g0012351 Lupinus albus HOM05D004202 ORTHO05D005021 2.0e-100 369.8 213 82.6
PGR102G1411 Punica granatum HOM05D004202 ORTHO05D005021 2.0e-100 369.8 252 76.2
AL3G28480 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 1.7e-99 366.7 245 75.9
arahy.Tifrunner.gnm1.ann1.J5QNAH Arachis hypogaea HOM05D004202 ORTHO05D005021 1.7e-99 366.7 218 82.1
arahy.Tifrunner.gnm1.ann1.KAJ2Z5 Arachis hypogaea HOM05D004202 ORTHO05D005021 1.7e-99 366.7 209 84.7
FAN14G0864 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.7e-99 366.7 238 75.6
Duzib192G0312 Durio zibethinus HOM05D004202 ORTHO05D005021 2.2e-99 366.3 245 75.5
Gorai.010G225300 Gossypium raimondii HOM05D004202 ORTHO05D005021 2.9e-99 365.9 250 73.2
Glyma.08G213100 Glycine max HOM05D004202 ORTHO05D005021 6.5e-99 364.8 217 81.6
Gohir.D06G192100 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.4e-98 363.6 250 72.8
Prupe.3G087400 Prunus persica HOM05D004202 ORTHO05D005021 1.9e-98 363.2 216 79.6
Ca_20447_v3 Cicer arietinum L. HOM05D004202 ORTHO05D005021 3.2e-98 362.5 219 81.3
arahy.Tifrunner.gnm1.ann1.42NKCZ Arachis hypogaea HOM05D004202 ORTHO05D005021 4.2e-98 362.1 216 81.9
AT3G15820 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 7.1e-98 361.3 237 76.4
MELO3C017864.2 Cucumis melo HOM05D004202 ORTHO05D005021 7.1e-98 361.3 260 68.8
Carub.0003s1556 Capsella rubella HOM05D004202 ORTHO05D005021 9.3e-98 360.9 228 77.6
Potri.003G032200 Populus trichocarpa HOM05D004202 ORTHO05D005021 1.2e-97 360.5 250 71.6
Sp3g14140 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.2e-97 360.5 244 73.8
A03p39480 Brassica napus HOM05D004202 ORTHO05D005021 2.1e-97 359.8 230 78.7
BraA03t13098Z Brassica rapa HOM05D004202 ORTHO05D005021 2.1e-97 359.8 230 78.7
TAR383G0028 Trochodendron aralioides HOM05D004202 ORTHO05D005021 2.1e-97 359.8 214 79.9
BcaC01g03855 Brassica carinata HOM05D004202 ORTHO05D005021 2.7e-97 359.4 229 78.6
C03p47880 Brassica napus HOM05D004202 ORTHO05D005021 2.7e-97 359.4 229 78.6
Thhalv10021241m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 3.5e-97 359.0 246 74.0
BcaB06g25690 Brassica carinata HOM05D004202 ORTHO05D005021 6.0e-97 358.2 219 79.5
BolC3t17065H Brassica oleracea HOM05D004202 ORTHO05D005021 6.0e-97 358.2 229 78.6
BcaC05g28930 Brassica carinata HOM05D004202 ORTHO05D005021 7.9e-97 357.8 232 77.6
C05p50570 Brassica napus HOM05D004202 ORTHO05D005021 7.9e-97 357.8 232 77.6
Dinv30605 Davidia involucrata HOM05D004202 ORTHO05D005021 1.0e-96 357.5 217 78.3
A05p33580 Brassica napus HOM05D004202 ORTHO05D005021 1.8e-96 356.7 232 77.2
BraA05t22181Z Brassica rapa HOM05D004202 ORTHO05D005021 1.8e-96 356.7 232 77.2
CsaV3_4G001700 Cucumis sativus L. HOM05D004202 ORTHO05D005021 1.8e-96 356.7 261 69.0
BolC5t33802H Brassica oleracea HOM05D004202 ORTHO05D005021 3.9e-96 355.5 232 77.2
MBI04_g19388_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 6.7e-96 354.8 218 79.8
Nn8g39505 Nelumbo nucifera HOM05D004202 ORTHO05D005021 1.3e-94 350.5 210 80.5
Cpa.g.sc10.268 Carica papaya HOM05D004202 ORTHO05D005021 2.2e-94 349.7 242 73.1
Actinidia01745 Actinidia chinensis HOM05D004202 ORTHO05D005021 6.3e-94 348.2 245 72.7
CSS0029540 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 6.3e-94 348.2 223 76.2
CSS0043041 Camellia sinensis var. sinensis HOM05D004202 ORTHO05D005021 6.3e-94 348.2 223 76.2
Rhsim08G0212900 Rhododendron simsii HOM05D004202 ORTHO05D005021 6.3e-94 348.2 231 75.8
Sabra03G0018400 Salix brachista HOM05D004202 ORTHO05D005021 1.1e-93 347.4 252 70.6
Oeu013862.1 Olea europaea HOM05D004202 ORTHO05D005021 3.1e-93 345.9 217 76.5
SalBow2G2770 Salvia bowleyana HOM05D004202 ORTHO05D005021 3.1e-93 345.9 217 77.9
Oeu042085.1 Olea europaea HOM05D004202 ORTHO05D005021 6.9e-93 344.7 214 76.2
MSTRG.11142 Avicennia marina HOM05D004202 ORTHO05D005021 1.0e-91 340.9 216 75.5
Sc10g0005940 Simmondsia chinensis HOM05D004202 ORTHO05D005021 1.3e-91 340.5 254 70.1
Lj3g0004144 Lotus japonicus HOM05D004202 ORTHO05D005021 1.7e-91 340.1 213 77.5
Carub.0003s1557 Capsella rubella HOM05D004202 ORTHO05D005021 2.2e-91 339.7 225 71.6
Lj9A500T78 Lonicera japonica HOM05D004202 ORTHO05D005021 2.2e-91 339.7 231 72.7
Sc10g0008080 Simmondsia chinensis HOM05D004202 ORTHO05D005021 5.0e-91 338.6 217 77.4
AT3G15830 Arabidopsis thaliana HOM05D004202 ORTHO05D005021 6.5e-91 338.2 267 63.3
Ah.01g020590 Amaranthus hybridus HOM05D004202 ORTHO05D005021 1.9e-90 336.7 244 70.9
BcaC09g48559 Brassica carinata HOM05D004202 ORTHO05D005021 2.5e-90 336.3 231 74.5
C01p48640 Brassica napus HOM05D004202 ORTHO05D005021 2.5e-90 336.3 231 74.5
Hund06558 Selenicereus undatus HOM05D004202 ORTHO05D005021 3.2e-90 335.9 214 75.7
AL3G28490 Arabidopsis lyrata HOM05D004202 ORTHO05D005021 5.5e-90 335.1 227 72.7
BcaB04g20901 Brassica carinata HOM05D004202 ORTHO05D005021 5.5e-90 335.1 231 74.0
BolC1t04818H Brassica oleracea HOM05D004202 ORTHO05D005021 7.2e-90 334.7 231 74.0
BraA01t03881Z Brassica rapa HOM05D004202 ORTHO05D005021 1.6e-89 333.6 231 73.6
Lsat_1_v5_gn_4_90081 Lactuca sativa HOM05D004202 ORTHO05D005021 2.1e-89 333.2 212 75.5
HanXRQChr02g0058561 Helianthus annuus HOM05D004202 ORTHO05D005021 2.7e-89 332.8 216 74.1
AUR62011519 Chenopodium quinoa HOM05D004202 ORTHO05D005021 3.6e-89 332.4 218 73.4
Sopen06g025420 Solanum pennellii HOM05D004202 ORTHO05D005021 3.6e-89 332.4 225 72.4
Solyc06g068150.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 4.6e-89 332.0 225 72.4
PGSC0003DMG400028510 Solanum tuberosum HOM05D004202 ORTHO05D005021 4.6e-89 332.0 225 72.0
A01p38300 Brassica napus HOM05D004202 ORTHO05D005021 7.9e-89 331.3 231 73.2
CAN.G1503.7 Capsicum annuum HOM05D004202 ORTHO05D005021 1.4e-88 330.5 218 74.3
Gohir.A05G123350 Gossypium hirsutum HOM05D004202 ORTHO05D005021 1.4e-88 330.5 219 76.3
Hma1.2p1_0042F.1_g025610 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.4e-88 330.5 218 72.9
Lj5A72T20 Lonicera japonica HOM05D004202 ORTHO05D005021 3.0e-88 329.3 216 73.6
SGA_v2.0_scaffold37G14766 Striga asiatica HOM05D004202 ORTHO05D005021 3.9e-88 328.9 216 73.6
ECA232G2164 Erigeron canadensis HOM05D004202 ORTHO05D005021 5.1e-88 328.6 230 70.9
AUR62016337 Chenopodium quinoa HOM05D004202 ORTHO05D005021 1.1e-87 327.4 213 73.7
Hma1.2p1_1144F.1_g261300 Hydrangea macrophylla HOM05D004202 ORTHO05D005021 1.1e-87 327.4 240 69.6
DCAR_025511 Daucus carota HOM05D004202 ORTHO05D005021 1.9e-87 326.6 220 70.9
Gohir.D05G124300 Gossypium hirsutum HOM05D004202 ORTHO05D005021 2.5e-87 326.2 219 74.4
Gorai.009G128300 Gossypium raimondii HOM05D004202 ORTHO05D005021 2.2e-86 323.2 219 74.0
Peaxi162Scf00207g00630 Petunia axillaris HOM05D004202 ORTHO05D005021 2.8e-86 322.8 218 70.6
EL10Ac9g21900 Beta vulgaris HOM05D004202 ORTHO05D005021 3.7e-86 322.4 214 73.4
Thhalv10015624m.g Eutrema salsugineum HOM05D004202 ORTHO05D005021 3.7e-86 322.4 209 74.2
Sopen03g035650 Solanum pennellii HOM05D004202 ORTHO05D005021 3.7e-86 322.4 221 71.5
Aqoxy7G02289 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.4e-85 320.5 217 70.0
CAN.G407.80 Capsicum annuum HOM05D004202 ORTHO05D005021 1.8e-85 320.1 221 71.0
Peaxi162Scf00332g00619 Petunia axillaris HOM05D004202 ORTHO05D005021 1.8e-85 320.1 218 71.1
PGSC0003DMG400000640 Solanum tuberosum HOM05D004202 ORTHO05D005021 1.8e-85 320.1 220 71.4
CARHR090920 Cardamine hirsuta HOM05D004202 ORTHO05D005021 4.1e-85 318.9 249 66.7
HanXRQChr16g0500411 Helianthus annuus HOM05D004202 ORTHO05D005021 4.1e-85 318.9 210 72.9
Nitab4.5_0008575g0020 Nicotiana tabacum HOM05D004202 ORTHO05D005021 6.9e-85 318.2 229 69.4
Solyc03g116740.3 Solanum lycopersicum HOM05D004202 ORTHO05D005021 6.9e-85 318.2 220 70.9
Migut.I00763 Erythranthe guttata HOM05D004202 ORTHO05D005021 9.1e-85 317.8 249 66.3
Nitab4.5_0003463g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 4.5e-84 315.5 248 66.1
GSVIVG01017341001 Vitis vinifera HOM05D004202 ORTHO05D005021 4.5e-84 315.5 174 86.2
PSO170G3116 Papaver somniferum HOM05D004202 ORTHO05D005021 1.7e-83 313.5 242 64.0
PSO017G2363 Papaver somniferum HOM05D004202 ORTHO05D005021 5.0e-83 312.0 242 64.0
CDE07G1814 Ceratophyllum demersum HOM05D004202 ORTHO05D005021 1.2e-81 307.4 224 68.8
Lj3g0021663 Lotus japonicus HOM05D004202 ORTHO05D005021 6.1e-81 305.1 220 70.0
HPP92_023144 Vanilla planifolia HOM05D004202 ORTHO05D005021 8.8e-80 301.2 203 73.4
A02p09730 Brassica napus HOM05D004202 ORTHO05D005021 2.6e-79 299.7 212 67.5
BraA02t06038Z Brassica rapa HOM05D004202 ORTHO05D005021 2.6e-79 299.7 212 67.5
BcaB05g22200 Brassica carinata HOM05D004202 ORTHO05D005021 3.3e-79 299.3 212 67.9
unitig_699.g19094 Utricularia gibba HOM05D004202 ORTHO05D005021 3.3e-79 299.3 218 68.8
BcaC03g14245 Brassica carinata HOM05D004202 ORTHO05D005021 5.7e-79 298.5 212 67.5
C02p16260 Brassica napus HOM05D004202 ORTHO05D005021 5.7e-79 298.5 212 67.5
BolC2t07727H Brassica oleracea HOM05D004202 ORTHO05D005021 5.7e-79 298.5 212 67.5
MBI04_g42944_MAGBIO Magnolia biondii HOM05D004202 ORTHO05D005021 1.4e-77 293.9 176 80.7
Aqoxy4G02272 Aquilegia oxysepala HOM05D004202 ORTHO05D005021 1.7e-75 287.0 215 67.0
Cc04_g04400 Coffea canephora HOM05D004202 ORTHO05D005021 1.1e-74 284.3 175 76.6
Sabra01G0157700 Salix brachista HOM05D004202 ORTHO05D005021 2.8e-70 269.6 229 61.6
Os06g0607100 Oryza sativa ssp. japonica HOM05D004202 ORTHO05D005021 1.7e-67 260.4 202 66.3
FAN02G2528 Fragaria x ananassa HOM05D004202 ORTHO05D005021 1.2e-65 254.2 267 54.3
Oeu013866.1 Olea europaea HOM05D004202 ORTHO05D005021 4.4e-63 245.7 236 55.9
Sp6g17250 Schrenkiella parvula HOM05D004202 ORTHO05D005021 1.3e-62 244.2 225 58.2
Thecc.06G024300 Theobroma cacao HOM05D004202 ORTHO05D005021 1.4e-61 240.7 136 86.0
Thecc.06G024700 Theobroma cacao HOM05D004202 ORTHO05D005021 4.1e-61 239.2 136 85.3
Lsat_1_v5_gn_1_34380 Lactuca sativa HOM05D004202 ORTHO05D005021 5.3e-61 238.8 214 58.9
Mapoly0019s0013 Marchantia polymorpha HOM05D004202 ORTHO05D005021 5.9e-60 235.3 198 59.1
BcaB01g04346 Brassica carinata HOM05D004202 ORTHO05D005021 6.8e-56 221.9 228 53.9
Lalb_Chr25g0279291 Lupinus albus HOM05D004202 ORTHO05D005021 1.5e-55 220.7 132 80.3
Oeu013867.1 Olea europaea HOM05D004202 ORTHO05D005021 9.1e-53 211.5 217 52.5
Pp3c20_11410 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.0e-48 198.0 226 45.1
Oeu042081.1 Olea europaea HOM05D004202 ORTHO05D005021 2.5e-42 176.8 179 57.0
Actinidia15761 Actinidia chinensis HOM05D004202 ORTHO05D005021 3.3e-42 176.4 170 56.5
Pp3c8_10870 Physcomitrium patens HOM05D004202 ORTHO05D005021 1.0e-40 171.4 161 50.9
Nitab4.5_0000373g0050 Nicotiana tabacum HOM05D004202 ORTHO05D005021 1.3e-27 127.9 79 77.2
Lalb_Chr25g0279281 Lupinus albus HOM05D004202 ORTHO05D005021 5.1e-27 125.9 77 75.3
Nitab4.5_0000373g0060 Nicotiana tabacum HOM05D004202 ORTHO05D005021 5.1e-19 99.4 66 68.2
AagrBONN_evm.TU.Sc2ySwM_228.136 Anthoceros agrestis HOM05D004202 ORTHO05D005021 1.9e-13 80.9 89 47.2
Lj5P198T82 Lonicera japonica HOM05D004202 ORTHO05D005021 1.0e-11 75.1 65 60.0
Zm00001eb386530 Zea mays HOM05D004202 ORTHO05D005021 1.0e-11 75.1 71 53.5
Lj5P204T31 Lonicera japonica HOM05D004202 ORTHO05D005021 3.9e-11 73.2 73 56.2
QL03p052981 Quercus lobata HOM05D004202 ORTHO05D005021 8.7e-11 72.0 44 81.8
BcaB08g35892 Brassica carinata HOM05D004202 ORTHO05D096023 6.9e-08 62.4 81 46.9
Nn5g27834 Nelumbo nucifera HOM05D004202 ORTHO05D005021 6.9e-08 62.4 40 72.5


User provided reference genes

Program Settings