Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.2934 Acer truncatum HOM05D005464 ORTHO05D006803 2.5e-240 835.1 444 100.0
TWI12G0099 Tripterygium wilfordii HOM05D005464 ORTHO05D006803 1.2e-144 517.3 384 69.8
Manes.11G057000 Manihot esculenta HOM05D005464 ORTHO05D006803 5.4e-142 508.4 378 70.4
RcHm_v2.0_Chr2g0135251 Rosa chinensis HOM05D005464 ORTHO05D006803 4.7e-138 495.4 372 67.7
Prupe.3G087600 Prunus persica HOM05D005464 ORTHO05D006803 6.1e-138 495.0 378 69.0
Lj3g0027830 Lotus japonicus HOM05D005464 ORTHO05D006803 1.5e-136 490.3 381 68.2
COL.COLO4_11947 Corchorus olitorius HOM05D005464 ORTHO05D006803 5.8e-136 488.4 379 68.3
MD17G1212300 Malus domestica HOM05D005464 ORTHO05D006803 5.8e-136 488.4 383 66.8
CANSAT56G0380 Cannabis sativa HOM05D005464 ORTHO05D006803 6.4e-135 485.0 371 68.7
Thecc.06G025100 Theobroma cacao HOM05D000467 ORTHO05D000379 8.3e-135 484.6 391 66.2
Lalb_Chr14g0373811 Lupinus albus HOM05D005464 ORTHO05D006803 1.2e-133 480.7 376 64.9
Cfa001959 Carpinus fangiana HOM05D005464 ORTHO05D006803 2.0e-133 479.9 369 67.5
Medtr2g103910 Medicago truncatula HOM05D005464 ORTHO05D006803 1.7e-132 476.9 378 64.3
FAN05G5161 Fragaria x ananassa HOM05D005464 ORTHO05D006803 1.1e-131 474.2 370 65.4
FvH4_6g29660 Fragaria vesca HOM05D005464 ORTHO05D006803 2.5e-131 473.0 368 65.8
VMungo1080G0510 Vigna mungo HOM05D005464 ORTHO05D006803 3.3e-131 472.6 372 66.1
TPR.G37199 Trifolium pratense HOM05D005464 ORTHO05D006803 4.3e-131 472.2 436 59.2
PGR031G2541 Punica granatum HOM05D005464 ORTHO05D006803 7.3e-131 471.5 370 66.8
Eucgr.J03066 Eucalyptus grandis HOM05D005464 ORTHO05D006803 9.5e-131 471.1 360 68.3
Glyma.13G365800 Glycine max HOM05D005464 ORTHO05D006803 2.1e-130 469.9 407 60.7
Psat5g302720 Pisum sativum HOM05D005464 ORTHO05D006803 2.1e-130 469.9 376 64.1
Phvul.005G178300 Phaseolus vulgaris HOM05D005464 ORTHO05D006803 3.6e-130 469.2 372 66.1
Glyma.15G007300 Glycine max HOM05D005464 ORTHO05D006803 8.0e-130 468.0 373 65.1
Gohir.A05G123300 Gossypium hirsutum HOM05D005464 ORTHO05D006803 6.8e-129 464.9 381 64.8
FAN09G2673 Fragaria x ananassa HOM05D005464 ORTHO05D006803 8.9e-129 464.5 378 63.8
Actinidia15983 Actinidia chinensis HOM05D005464 ORTHO05D006803 4.4e-128 462.2 370 64.3
Ca_01055_v3 Cicer arietinum L. HOM05D005464 ORTHO05D006803 4.4e-128 462.2 373 63.3
GSVIVG01017342001 Vitis vinifera HOM05D005464 ORTHO05D006803 4.4e-128 462.2 366 66.7
Haze_16562 Corylus avellana HOM05D005464 ORTHO05D006803 2.2e-127 459.9 379 63.3
Gorai.009G128200 Gossypium raimondii HOM05D005464 ORTHO05D006803 8.3e-127 458.0 374 64.7
FAN14G5059 Fragaria x ananassa HOM05D005464 ORTHO05D006803 2.1e-125 453.4 409 59.2
Nn8g39510 Nelumbo nucifera HOM05D005464 ORTHO05D006803 8.6e-124 448.0 361 66.2
Sed0012798 Sechium edule HOM05D005464 ORTHO05D006803 1.5e-123 447.2 380 62.6
CiPaw.02G157400 Carya illinoinensis HOM05D005464 ORTHO05D006803 1.6e-122 443.7 362 67.1
Gohir.D05G124200 Gossypium hirsutum HOM05D005464 ORTHO05D006803 2.1e-122 443.4 381 63.0
PSO017G6540 Papaver somniferum HOM05D005464 ORTHO05D006803 2.8e-122 443.0 368 62.0
Lalb_Chr22g0350841 Lupinus albus HOM05D005464 ORTHO05D006803 1.1e-121 441.0 372 61.0
ClCG07G012450 Citrullus lanatus HOM05D005464 ORTHO05D006803 1.4e-121 440.7 378 62.4
Lsat_1_v5_gn_4_89921 Lactuca sativa HOM05D005464 ORTHO05D006803 5.2e-121 438.7 362 62.2
Cpa.g.sc10.270 Carica papaya HOM05D005464 ORTHO05D006803 2.0e-120 436.8 370 63.8
Migut.I00762 Erythranthe guttata HOM05D005464 ORTHO05D006803 2.0e-120 436.8 368 62.0
Rhsim12G0191100 Rhododendron simsii HOM05D005464 ORTHO05D006803 3.4e-120 436.0 367 63.8
PSO170G0224 Papaver somniferum HOM05D005464 ORTHO05D006803 5.8e-120 435.3 370 60.8
DCAR_021346 Daucus carota HOM05D005464 ORTHO05D006803 7.5e-120 434.9 382 60.2
MSTRG.22747 Avicennia marina HOM05D005464 ORTHO05D006803 1.3e-119 434.1 364 62.4
THA.LOC104812511 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 2.9e-119 433.0 361 63.7
Aqoxy7G02293 Aquilegia oxysepala HOM05D005464 ORTHO05D006803 3.7e-119 432.6 371 61.2
AT1G15330 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 2.4e-118 429.9 377 61.0
Eucgr.F03878 Eucalyptus grandis HOM05D005464 ORTHO05D006803 5.4e-118 428.7 363 62.3
ECA232G3027 Erigeron canadensis HOM05D005464 ORTHO05D006803 2.1e-117 426.8 367 60.8
CsaV3_4G001710 Cucumis sativus L. HOM05D005464 ORTHO05D006803 6.0e-117 425.2 418 57.9
HanXRQChr16g0500301 Helianthus annuus HOM05D005464 ORTHO05D006803 1.0e-116 424.5 370 60.3
Carub.0001s1508 Capsella rubella HOM05D005464 ORTHO05D006803 1.3e-116 424.1 370 61.4
AL1G27420 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 3.0e-116 422.9 384 59.4
Thhalv10008048m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 1.5e-115 420.6 369 60.7
Nitab4.5_0000373g0080 Nicotiana tabacum HOM05D005464 ORTHO05D006803 1.5e-115 420.6 376 59.3
EL10Ac9g21898 Beta vulgaris HOM05D005464 ORTHO05D006803 1.9e-115 420.2 368 60.6
SGA_v2.0_scaffold5G02698 Striga asiatica HOM05D005464 ORTHO05D006803 5.6e-115 418.7 365 61.4
Sp1g13650 Schrenkiella parvula HOM05D005464 ORTHO05D006803 9.6e-115 417.9 378 59.5
CAN.G1503.8 Capsicum annuum HOM05D005464 ORTHO05D006803 1.2e-114 417.5 375 60.0
MELO3C017863.2 Cucumis melo HOM05D005464 ORTHO05D006803 1.2e-114 417.5 372 61.6
C05p13460 Brassica napus HOM05D005464 ORTHO05D006803 2.8e-114 416.4 375 59.5
THA.LOC104812509 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 2.8e-114 416.4 374 58.6
A06p11340 Brassica napus HOM05D005464 ORTHO05D006803 3.6e-114 416.0 378 59.3
BraA06t24313Z Brassica rapa HOM05D005464 ORTHO05D006803 3.6e-114 416.0 378 59.3
Hund06557 Selenicereus undatus HOM05D005464 ORTHO05D006803 4.7e-114 415.6 361 58.7
BolC5t30083H Brassica oleracea HOM05D005464 ORTHO05D006803 6.2e-114 415.2 375 59.5
Nitab4.5_0006769g0010 Nicotiana tabacum HOM05D005464 ORTHO05D006803 6.2e-114 415.2 377 58.6
AUR62016335 Chenopodium quinoa HOM05D005464 ORTHO05D006803 8.1e-114 414.8 361 58.4
BcaC05g25470 Brassica carinata HOM05D005464 ORTHO05D006803 1.1e-113 414.5 377 59.4
CARHR015860 Cardamine hirsuta HOM05D005464 ORTHO05D006803 1.4e-113 414.1 378 58.7
Atru.chr1.2936 Acer truncatum HOM05D005464 ORTHO05D006803 1.8e-113 413.7 229 94.8
Dinv30606 Davidia involucrata HOM05D005464 ORTHO05D006803 1.8e-113 413.7 371 61.7
PGR102G0885 Punica granatum HOM05D005464 ORTHO05D006803 3.1e-113 412.9 380 56.6
Aa31LG7G100 Aethionema arabicum HOM05D005464 ORTHO05D006803 8.9e-113 411.4 377 59.4
Solyc06g068160.3 Solanum lycopersicum HOM05D005464 ORTHO05D006803 2.6e-112 409.8 371 59.3
AT1G80090 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 7.6e-112 408.3 366 59.3
Thhalv10019455m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 9.9e-112 407.9 371 58.2
Sopen06g025430 Solanum pennellii HOM05D005464 ORTHO05D006803 3.8e-111 406.0 371 58.8
PGSC0003DMG400028509 Solanum tuberosum HOM05D005464 ORTHO05D006803 3.8e-111 406.0 371 58.2
arahy.Tifrunner.gnm1.ann1.JVJR89 Arachis hypogaea HOM05D005464 ORTHO05D006803 4.2e-110 402.5 376 57.2
arahy.Tifrunner.gnm1.ann1.Y6ZEHB Arachis hypogaea HOM05D005464 ORTHO05D006803 4.2e-110 402.5 376 57.2
vmacro16896 Vaccinium macrocarpon HOM05D005464 ORTHO05D006803 1.3e-108 397.5 398 57.3
Duzib160G0683 Durio zibethinus HOM05D005464 ORTHO05D006803 3.9e-108 396.0 306 67.3
Peaxi162Scf00207g00638 Petunia axillaris HOM05D005464 ORTHO05D006803 3.9e-108 396.0 367 58.3
unitig_0.g1114 Utricularia gibba HOM05D005464 ORTHO05D006803 3.9e-108 396.0 363 56.2
SHI11227 Sapria himalayana HOM05D005464 ORTHO05D006803 8.7e-108 394.8 363 58.4
AUR62011516 Chenopodium quinoa HOM05D005464 ORTHO05D006803 1.5e-107 394.0 335 59.7
MBI14_g16402_MAGBIO Magnolia biondii HOM05D005464 ORTHO05D006803 4.3e-107 392.5 377 59.7
BcaC08g47570 Brassica carinata HOM05D005464 ORTHO05D006803 1.4e-105 387.5 367 57.2
BolC6t40438H Brassica oleracea HOM05D005464 ORTHO05D006803 1.4e-105 387.5 367 57.2
C06p54250 Brassica napus HOM05D005464 ORTHO05D006803 5.3e-105 385.6 414 53.1
BcaB02g08721 Brassica carinata HOM05D005464 ORTHO05D006803 1.5e-104 384.0 376 55.3
A07p45420 Brassica napus HOM05D005464 ORTHO05D006803 5.8e-104 382.1 414 52.2
Sp5g35710 Schrenkiella parvula HOM05D005464 ORTHO05D006803 2.2e-103 380.2 329 59.6
CARHR074410 Cardamine hirsuta HOM05D005464 ORTHO05D006803 9.3e-102 374.8 329 59.3
Ciclev10026304m.g Citrus clementina HOM05D005464 ORTHO05D006803 6.0e-101 372.1 248 77.8
Os02g0158900 Oryza sativa ssp. japonica HOM05D005464 ORTHO05D006803 3.6e-98 362.8 370 53.5
Zm00001eb232620 Zea mays HOM05D005464 ORTHO05D006803 5.8e-96 355.5 392 51.8
ATR0800G035 Amborella trichopoda HOM05D005464 ORTHO05D006803 1.7e-95 354.0 377 52.3
BraA07t32046Z Brassica rapa HOM05D005464 ORTHO05D006803 3.2e-94 349.7 367 53.1
HPP92_016981 Vanilla planifolia HOM05D005464 ORTHO05D006803 5.6e-91 339.0 374 49.5
Carub.0002s2743 Capsella rubella HOM05D005464 ORTHO05D006803 5.8e-88 328.9 306 56.5
Aa31LG4G370 Aethionema arabicum HOM05D005464 ORTHO05D006803 3.8e-79 299.7 307 50.8
Oeu045134.1 Olea europaea HOM05D005464 ORTHO05D006803 1.1e-78 298.1 256 61.7
SMO201G0050 Selaginella moellendorffii HOM05D005464 ORTHO05D006803 1.9e-78 297.4 366 45.9
Mapoly0007s0086 Marchantia polymorpha HOM05D005464 ORTHO05D006803 7.1e-78 295.4 358 43.9
Pp3c3_23830 Physcomitrium patens HOM05D005464 ORTHO05D006803 1.3e-76 291.2 357 44.8
QL05p029765 Quercus lobata HOM05D005464 ORTHO05D006803 2.3e-76 290.4 234 64.5
QL05p030112 Quercus lobata HOM05D005464 ORTHO05D006803 2.3e-76 290.4 234 64.5
Nn2g12091 Nelumbo nucifera HOM05D000467 ORTHO05D000379 6.1e-69 265.8 235 61.7
Lj9P500T36 Lonicera japonica HOM05D005464 ORTHO05D006803 3.8e-63 246.5 218 59.6
AagrBONN_evm.TU.Sc2ySwM_368.1642 Anthoceros agrestis HOM05D005464 ORTHO05D006803 1.8e-60 237.7 349 39.3
PGR102G1999 Punica granatum HOM05D005464 ORTHO05D006803 3.7e-58 229.9 302 45.0
Sc06g0005910 Simmondsia chinensis HOM05D005464 ORTHO05D006803 1.2e-56 224.9 214 54.2
VMungo1127G1748 Vigna mungo HOM05D005464 ORTHO05D006803 1.5e-51 208.0 202 56.4
TAR383G0924 Trochodendron aralioides HOM05D005464 ORTHO05D006803 1.1e-49 201.8 134 79.1
AagrBONN_evm.TU.Sc2ySwM_344.2189 Anthoceros agrestis HOM05D005464 ORTHO05D006803 5.9e-48 196.1 228 45.6
Cc04_g04410 Coffea canephora HOM05D005464 ORTHO05D006803 1.7e-47 194.5 291 44.0
Sc06g0005900 Simmondsia chinensis HOM05D005464 ORTHO05D006803 1.7e-47 194.5 137 69.3
HPP92_010901 Vanilla planifolia HOM05D005464 ORTHO05D006803 3.8e-47 193.4 225 46.7
CSS0011845 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 6.5e-47 192.6 135 71.1
CSS0036664 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 4.2e-46 189.9 146 66.4
Hma1.2p1_1144F.1_g261310 Hydrangea macrophylla HOM05D005464 ORTHO05D006803 4.2e-46 189.9 216 53.7
CBR_g24374 Chara braunii HOM05D005464 ORTHO05D006803 3.7e-42 176.8 512 27.5
BcaC05g25495 Brassica carinata HOM05D005464 ORTHO05D006803 4.8e-42 176.4 184 51.6
Pp3c13_16980 Physcomitrium patens HOM05D005464 ORTHO05D006803 2.4e-41 174.1 231 43.3
AL2G41450 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 3.4e-35 153.7 143 57.3
Psat6g000160 Pisum sativum HOM05D005464 ORTHO05D006803 1.3e-31 141.7 136 55.9
AL2G41440 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 6.1e-29 132.9 136 52.2
Psat1g035880 Pisum sativum HOM05D005464 ORTHO05D006803 1.8e-28 131.3 105 63.8
TAR383G0332 Trochodendron aralioides HOM05D005464 ORTHO05D006803 4.0e-28 130.2 115 54.8
QL05p029759 Quercus lobata HOM05D005464 ORTHO05D006803 6.2e-21 106.3 128 50.0
QL05p030118 Quercus lobata HOM05D005464 ORTHO05D006803 6.2e-21 106.3 128 50.0
SEGI_27934 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 1.0e-20 105.5 300 28.0
SEGI_39315 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 2.0e-16 91.3 119 44.5
CBR_g38673 Chara braunii HOM05D005464 ORTHO05D006803 1.1e-14 85.5 201 30.8
Medtr2g103890 Medicago truncatula HOM05D005464 ORTHO05D006803 2.2e-10 71.2 106 44.3
Nn1g00750 Nelumbo nucifera HOM05D005464 ORTHO05D006803 2.9e-10 70.9 111 41.4
Psat6g211360 Pisum sativum HOM05D005464 ORTHO05D006803 1.7e-07 61.6 133 33.8
FvH4_4g31760 Fragaria vesca HOM05D001741 ORTHO05D002196 1.9e-06 58.2 168 27.4
FAN12G1673 Fragaria x ananassa HOM05D001741 ORTHO05D002196 1.9e-06 58.2 168 27.4
Hma1.2p1_0090F.1_g046010 Hydrangea macrophylla HOM05D005464 ORTHO05D048341 4.3e-06 57.0 28 82.1
Hma1.2p1_0090F.1_g046015 Hydrangea macrophylla HOM05D005464 ORTHO05D048341 4.3e-06 57.0 28 82.1


User provided reference genes

Program Settings