Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 8.2e-35 149.8 75 100.0
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.1e-26 122.9 69 84.1
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 3.1e-26 121.3 68 85.3
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 3.1e-26 121.3 71 81.7
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 4.1e-26 120.9 68 83.8
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 4.1e-26 120.9 69 82.6
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 7.0e-26 120.2 74 77.0
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 1.5e-25 119.0 71 78.9
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 1.5e-25 119.0 71 76.1
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 2.0e-25 118.6 70 77.1
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 7.7e-25 116.7 69 78.3
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 1.0e-24 116.3 69 75.4
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 1.3e-24 115.9 72 72.2
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 1.7e-24 115.5 69 75.4
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 3.8e-24 114.4 77 70.1
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 8.5e-24 113.2 74 73.0
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 8.5e-24 113.2 69 72.5
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 8.5e-24 113.2 74 68.9
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 2.5e-23 111.7 69 75.4
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 2.5e-23 111.7 74 68.9
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 3.2e-23 111.3 63 79.4
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 5.5e-23 110.5 69 73.9
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 7.2e-23 110.2 68 75.0
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 9.4e-23 109.8 64 76.6
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 9.4e-23 109.8 69 71.0
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 9.4e-23 109.8 63 76.2
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 9.4e-23 109.8 63 76.2
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 9.4e-23 109.8 75 68.0
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 1.2e-22 109.4 68 75.0
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 1.2e-22 109.4 69 73.9
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 1.6e-22 109.0 71 73.2
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 1.6e-22 109.0 74 68.9
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 1.6e-22 109.0 67 71.6
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 1.6e-22 109.0 67 71.6
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 2.1e-22 108.6 69 71.0
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 2.7e-22 108.2 75 64.0
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 2.7e-22 108.2 69 68.1
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 2.7e-22 108.2 71 67.6
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 3.6e-22 107.8 74 66.2
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 3.6e-22 107.8 74 66.2
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 4.7e-22 107.5 71 67.6
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 8.0e-22 106.7 70 68.6
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 1.4e-21 105.9 69 69.6
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 1.4e-21 105.9 65 69.2
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 2.3e-21 105.1 67 70.1
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 2.3e-21 105.1 63 74.6
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 3.0e-21 104.8 62 75.8
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 3.9e-21 104.4 73 61.6
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 3.9e-21 104.4 69 71.0
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 5.2e-21 104.0 75 64.0
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 6.7e-21 103.6 69 66.7
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 6.7e-21 103.6 67 68.7
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 8.8e-21 103.2 69 65.2
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 8.8e-21 103.2 72 65.3
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 1.5e-20 102.4 68 64.7
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 1.5e-20 102.4 68 69.1
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 2.6e-20 101.7 74 62.2
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 3.3e-20 101.3 67 64.2
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 3.3e-20 101.3 65 69.2
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 3.3e-20 101.3 67 70.1
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 4.4e-20 100.9 73 63.0
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 5.7e-20 100.5 62 71.0
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 3.7e-19 97.8 69 63.8
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 3.7e-19 97.8 55 78.2
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 4.8e-19 97.4 79 62.0
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 6.3e-19 97.1 67 62.7
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 1.1e-18 96.3 68 69.1
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 3.1e-18 94.7 68 57.4
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 5.3e-18 94.0 71 59.2
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 7.0e-18 93.6 71 59.2
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 7.0e-18 93.6 71 59.2
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 9.1e-18 93.2 68 60.3
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.6e-17 92.4 71 59.2
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 5.0e-16 87.4 51 70.6
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 6.5e-16 87.0 51 70.6
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 1.9e-15 85.5 74 62.2
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 5.5e-15 84.0 48 70.8
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 1.2e-14 82.8 69 60.9
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.6e-14 82.4 65 56.9
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 2.1e-14 82.0 47 70.2
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 2.7e-14 81.6 71 54.9
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 6.1e-14 80.5 51 64.7
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 8.0e-14 80.1 44 79.5
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 1.8e-13 79.0 49 75.5
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 2.3e-13 78.6 69 55.1
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 3.0e-13 78.2 68 55.9
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 3.0e-13 78.2 45 68.9
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 3.0e-13 78.2 45 68.9
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 2.0e-12 75.5 73 50.7
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 2.0e-12 75.5 103 39.8
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 2.6e-12 75.1 44 68.2
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 2.6e-12 75.1 44 68.2
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 4.4e-12 74.3 73 49.3
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 4.4e-12 74.3 73 49.3
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 4.4e-12 74.3 67 53.7
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 5.7e-12 73.9 69 53.6
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 7.5e-12 73.6 57 52.6
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 9.7e-12 73.2 44 68.2
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 9.7e-12 73.2 74 48.6
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 9.7e-12 73.2 66 53.0
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 9.7e-12 73.2 74 48.6
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 9.7e-12 73.2 74 48.6
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 9.7e-12 73.2 44 65.9
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 1.3e-11 72.8 39 76.9
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 1.7e-11 72.4 44 65.9
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 2.8e-11 71.6 68 51.5
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 4.8e-11 70.9 44 63.6
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 6.3e-11 70.5 46 58.7
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 1.8e-10 68.9 41 68.3
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 4.1e-10 67.8 52 55.8
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 7.0e-10 67.0 42 69.0
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 7.0e-10 67.0 50 54.0
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 9.1e-10 66.6 41 63.4
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 2.7e-09 65.1 38 65.8
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 3.5e-09 64.7 45 57.8
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 3.5e-09 64.7 38 68.4
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 5.9e-09 63.9 39 61.5
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 5.9e-09 63.9 39 64.1
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 5.9e-09 63.9 39 66.7
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 7.7e-09 63.5 42 59.5
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 7.7e-09 63.5 38 60.5
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.0e-08 63.2 40 62.5
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 3.8e-08 61.2 44 54.5
Mapoly0116s0019 Marchantia polymorpha HOM05D006125 ORTHO05D007404 3.8e-08 61.2 42 54.8
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 6.5e-08 60.5 40 60.0
CBR_g24249 Chara braunii HOM05D006125 ORTHO05D007404 8.5e-08 60.1 65 46.2
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 2.1e-06 55.5 41 46.3
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 4.7e-06 54.3 48 43.8


User provided reference genes

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