Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 8.9e-84 313.5 156 100.0
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 2.4e-49 199.1 225 55.1
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 3.4e-43 178.7 178 55.1
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 4.5e-43 178.3 225 48.9
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 4.6e-40 168.3 225 47.1
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 4.6e-40 168.3 225 47.1
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 2.5e-38 162.5 225 45.8
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 5.7e-38 161.4 225 46.2
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 7.4e-38 161.0 225 44.4
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 7.4e-38 161.0 216 48.6
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 9.7e-38 160.6 218 46.8
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 9.7e-38 160.6 213 47.4
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 1.3e-37 160.2 90 82.2
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 2.2e-37 159.5 90 80.0
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 2.8e-37 159.1 220 45.9
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 2.8e-37 159.1 225 44.9
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 2.8e-37 159.1 225 45.8
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 3.7e-37 158.7 225 45.8
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 8.2e-37 157.5 90 80.0
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 8.2e-37 157.5 220 45.9
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 8.2e-37 157.5 219 44.7
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 8.2e-37 157.5 90 80.0
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 8.2e-37 157.5 225 44.9
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.1e-36 157.1 91 82.4
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.1e-36 157.1 91 82.4
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.1e-36 157.1 225 45.3
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.1e-36 157.1 225 44.9
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.1e-36 157.1 225 44.9
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.4e-36 156.8 90 78.9
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 1.4e-36 156.8 225 43.1
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.4e-36 156.8 90 78.9
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.8e-36 156.4 235 43.4
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.8e-36 156.4 90 80.0
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 2.4e-36 156.0 90 80.0
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 3.1e-36 155.6 218 45.0
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 3.1e-36 155.6 225 46.2
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 3.1e-36 155.6 90 82.2
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 4.1e-36 155.2 226 44.2
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 4.1e-36 155.2 90 80.0
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 6.9e-36 154.5 90 81.1
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 9.0e-36 154.1 225 45.3
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 1.2e-35 153.7 220 45.9
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 1.2e-35 153.7 220 45.9
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 1.5e-35 153.3 225 44.0
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 1.5e-35 153.3 224 43.8
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 1.5e-35 153.3 90 78.9
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 2.6e-35 152.5 218 44.5
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 3.4e-35 152.1 90 75.6
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 3.4e-35 152.1 90 80.0
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 3.4e-35 152.1 90 76.7
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 4.5e-35 151.8 219 42.9
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 4.5e-35 151.8 90 81.1
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 4.5e-35 151.8 222 44.6
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 4.5e-35 151.8 220 44.5
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 5.9e-35 151.4 90 76.7
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 5.9e-35 151.4 225 44.0
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 5.9e-35 151.4 217 44.7
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 7.7e-35 151.0 219 42.5
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 7.7e-35 151.0 90 78.9
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 1.0e-34 150.6 218 44.0
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.0e-34 150.6 90 76.7
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.0e-34 150.6 90 75.6
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 1.0e-34 150.6 90 80.0
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.0e-34 150.6 90 80.0
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.3e-34 150.2 209 45.5
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.3e-34 150.2 90 75.6
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 1.3e-34 150.2 225 43.6
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 1.3e-34 150.2 90 75.6
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 1.3e-34 150.2 90 78.9
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 1.7e-34 149.8 90 74.4
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 1.7e-34 149.8 90 75.6
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 1.7e-34 149.8 90 78.9
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.7e-34 149.8 218 42.2
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 2.2e-34 149.4 225 43.6
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 2.2e-34 149.4 90 74.4
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 2.2e-34 149.4 90 74.4
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.2e-34 149.4 90 74.4
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 2.2e-34 149.4 225 43.6
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 2.2e-34 149.4 228 42.5
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 2.2e-34 149.4 90 78.9
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 3.8e-34 148.7 90 74.4
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 3.8e-34 148.7 90 78.9
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 3.8e-34 148.7 225 43.6
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 5.0e-34 148.3 90 73.3
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 5.0e-34 148.3 90 75.6
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 5.0e-34 148.3 90 73.3
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 5.0e-34 148.3 90 76.7
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 6.5e-34 147.9 90 74.4
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 6.5e-34 147.9 90 77.8
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 8.5e-34 147.5 225 43.1
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 8.5e-34 147.5 229 46.3
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 8.5e-34 147.5 229 46.3
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 8.5e-34 147.5 90 77.8
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 1.1e-33 147.1 90 73.3
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 1.1e-33 147.1 90 73.3
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.1e-33 147.1 224 42.9
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 1.1e-33 147.1 90 77.8
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.4e-33 146.7 90 77.8
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 1.4e-33 146.7 204 46.1
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.4e-33 146.7 90 78.9
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.9e-33 146.4 225 43.6
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 1.9e-33 146.4 90 73.3
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.9e-33 146.4 220 42.3
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.9e-33 146.4 90 77.8
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 2.5e-33 146.0 90 71.1
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 3.2e-33 145.6 90 73.3
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 4.2e-33 145.2 90 71.1
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 3.6e-32 142.1 90 75.6
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.6e-32 142.1 225 41.8
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 6.1e-32 141.4 90 73.3
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 1.0e-31 140.6 90 74.4
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.8e-31 139.8 90 76.7
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.3e-31 139.4 90 68.9
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.3e-31 139.4 90 68.9
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 3.0e-31 139.0 90 73.3
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 6.7e-31 137.9 90 70.0
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 6.7e-31 137.9 90 68.9
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.5e-30 136.0 90 73.3
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 2.5e-30 136.0 90 74.4
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 3.3e-30 135.6 214 43.5
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 3.3e-30 135.6 90 71.1
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 9.7e-30 134.0 90 70.0
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 2.2e-29 132.9 90 70.0
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 6.3e-29 131.3 90 68.9
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 1.4e-28 130.2 100 63.0
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.8e-28 129.8 90 66.7
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 1.8e-28 129.8 94 71.3
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 2.4e-28 129.4 88 67.0
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 2.4e-28 129.4 90 67.8
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.2e-27 127.1 90 65.6
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 2.6e-27 125.9 89 65.2
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 1.0e-26 124.0 88 63.6
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 1.3e-26 123.6 88 64.8
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 4.7e-24 115.2 107 53.3
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 2.0e-22 109.8 90 58.9
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 3.7e-21 105.5 90 60.0
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 8.2e-21 104.4 67 74.6
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 1.4e-20 103.6 91 54.9
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 6.3e-13 78.2 144 39.6
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 8.2e-13 77.8 138 35.5
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 2.0e-11 73.2 92 44.6
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.0e-11 73.2 175 35.4
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 2.6e-11 72.8 88 39.8
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 4.5e-11 72.0 91 41.8
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.0e-10 70.9 92 43.5
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 1.0e-10 70.9 42 73.8
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 9.4e-09 64.3 152 34.9
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 6.1e-08 61.6 39 69.2
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 1.0e-07 60.8 44 61.4
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 8.8e-07 57.8 66 39.4
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 3.3e-06 55.8 75 41.3
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 5.7e-06 55.1 28 89.3


User provided reference genes

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