Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.2601 Acer truncatum HOM05D005956 ORTHO05D007197 6.7e-170 600.9 375 100.0
Atru.chr1.2600 Acer truncatum HOM05D005956 ORTHO05D007197 8.6e-141 504.2 307 87.0
CiPaw.01G207000 Carya illinoinensis HOM05D005956 ORTHO05D007197 7.1e-111 404.8 307 68.4
Cfa003426 Carpinus fangiana HOM05D005956 ORTHO05D007197 3.3e-108 396.0 307 68.1
Duzib192G0068 Durio zibethinus HOM05D005956 ORTHO05D007197 1.2e-107 394.0 307 67.1
QL07p046118 Quercus lobata HOM05D005956 ORTHO05D007197 2.1e-107 393.3 307 71.0
Ciclev10013933m.g Citrus clementina HOM05D005956 ORTHO05D007197 4.4e-105 385.6 307 71.0
Sabra07G0001300 Salix brachista HOM05D005956 ORTHO05D007197 1.9e-103 380.2 307 63.8
MD17G1161200 Malus domestica HOM05D005956 ORTHO05D007197 2.4e-103 379.8 308 64.0
Eucgr.J03191 Eucalyptus grandis HOM05D005956 ORTHO05D007197 2.7e-102 376.3 306 63.7
RcHm_v2.0_Chr2g0149071 Rosa chinensis HOM05D005956 ORTHO05D007197 2.7e-102 376.3 308 64.3
Potri.007G001800 Populus trichocarpa HOM05D005956 ORTHO05D007197 4.6e-102 375.6 307 68.1
Gohir.D06G117400 Gossypium hirsutum HOM05D005956 ORTHO05D007197 6.6e-101 371.7 308 68.5
Gorai.010G135000 Gossypium raimondii HOM05D005956 ORTHO05D007197 6.6e-101 371.7 308 68.5
CANSAT01G3224 Cannabis sativa HOM05D005956 ORTHO05D007197 6.2e-99 365.2 308 67.5
Manes.14G006900 Manihot esculenta HOM05D005956 ORTHO05D007197 8.1e-99 364.8 307 61.6
FvH4_6g36600 Fragaria vesca HOM05D005956 ORTHO05D007197 1.1e-98 364.4 308 62.7
Prupe.3G025200 Prunus persica HOM05D005956 ORTHO05D007197 2.2e-96 356.7 269 68.0
PGR083G0114 Punica granatum HOM05D005956 ORTHO05D007197 4.9e-96 355.5 307 61.9
Thecc.06G054100 Theobroma cacao HOM05D005956 ORTHO05D007197 8.4e-96 354.8 307 61.6
Actinidia21896 Actinidia chinensis HOM05D005956 ORTHO05D007197 3.0e-93 346.3 322 59.3
MELO3C020528.2 Cucumis melo HOM05D005956 ORTHO05D007197 2.8e-91 339.7 307 59.6
TWI12G1352 Tripterygium wilfordii HOM05D005956 ORTHO05D007197 4.8e-91 339.0 307 59.9
AUR62000122 Chenopodium quinoa HOM05D005956 ORTHO05D007197 5.8e-89 332.0 278 60.8
Sed0023146 Sechium edule HOM05D005956 ORTHO05D007197 9.9e-89 331.3 307 61.2
Nitab4.5_0000499g0110 Nicotiana tabacum HOM05D005956 ORTHO05D007197 2.2e-88 330.1 307 57.7
Cpa.g.sc176.24 Carica papaya HOM05D005956 ORTHO05D007197 8.4e-88 328.2 307 59.0
Haze_16217 Corylus avellana HOM05D005956 ORTHO05D007197 1.1e-87 327.8 459 45.1
Hund05666 Selenicereus undatus HOM05D005956 ORTHO05D007197 7.1e-87 325.1 273 62.3
BraA07t31918Z Brassica rapa HOM05D000309 ORTHO05D007197 9.3e-87 324.7 309 56.6
FAN09G1770 Fragaria x ananassa HOM05D005956 ORTHO05D007197 1.2e-86 324.3 307 58.3
FAN02G1317 Fragaria x ananassa HOM05D005956 ORTHO05D007197 4.6e-86 322.4 307 58.0
FAN14G1696 Fragaria x ananassa HOM05D005956 ORTHO05D007197 6.0e-86 322.0 307 58.0
CsaV3_1G036410 Cucumis sativus L. HOM05D005956 ORTHO05D007197 1.0e-85 321.2 307 62.2
COL.COLO4_25126 Corchorus olitorius HOM05D005956 ORTHO05D007197 3.9e-85 319.3 308 61.0
CAN.G790.4 Capsicum annuum HOM05D005956 ORTHO05D007197 1.6e-83 313.9 307 59.0
FvH4_4g20560 Fragaria vesca HOM05D005956 ORTHO05D007197 6.2e-83 312.0 304 55.9
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 4.0e-82 309.3 308 56.2
Aa31LG4G2050 Aethionema arabicum HOM05D005956 ORTHO05D007197 3.4e-81 306.2 307 53.7
Carub.0002s2578 Capsella rubella HOM05D005956 ORTHO05D007197 4.5e-81 305.8 309 58.3
AUR62019303 Chenopodium quinoa HOM05D005956 ORTHO05D007197 2.2e-80 303.5 313 53.0
Sopen03g041770 Solanum pennellii HOM05D005956 ORTHO05D007197 2.2e-80 303.5 311 58.5
CSS0010876 Camellia sinensis var. sinensis HOM05D005956 ORTHO05D007197 8.4e-80 301.6 308 55.5
arahy.Tifrunner.gnm1.ann1.12WCBU Arachis hypogaea HOM05D005956 ORTHO05D007197 7.9e-78 295.0 308 49.0
Rhsim08G0251500 Rhododendron simsii HOM05D005956 ORTHO05D007197 7.9e-78 295.0 308 54.5
TAR636G0827 Trochodendron aralioides HOM05D005956 ORTHO05D007197 1.8e-77 293.9 308 53.9
arahy.Tifrunner.gnm1.ann1.03KM4I Arachis hypogaea HOM05D005956 ORTHO05D007197 3.0e-77 293.1 308 49.0
arahy.Tifrunner.gnm1.ann1.XHCR8J Arachis hypogaea HOM05D005956 ORTHO05D007197 3.0e-77 293.1 308 48.7
EL10Ac7g17213 Beta vulgaris HOM05D005956 ORTHO05D007197 1.9e-76 290.4 308 57.1
PSO170G2336 Papaver somniferum HOM05D005956 ORTHO05D007197 2.5e-76 290.0 308 51.6
Solyc03g124040.3 Solanum lycopersicum HOM05D005956 ORTHO05D007197 2.5e-76 290.0 307 52.1
PGSC0003DMG400009194 Solanum tuberosum HOM05D005956 ORTHO05D007197 7.4e-76 288.5 311 56.6
vmacro18734 Vaccinium macrocarpon HOM05D005956 ORTHO05D007197 1.3e-75 287.7 308 52.6
Peaxi162Scf00038g02615 Petunia axillaris HOM05D005956 ORTHO05D007197 2.6e-73 280.0 308 55.5
unitig_578.g15928 Utricularia gibba HOM05D005956 ORTHO05D007197 2.6e-73 280.0 310 47.7
C06p52830 Brassica napus HOM05D000309 ORTHO05D007197 4.5e-73 279.3 308 49.7
Sp5g33970 Schrenkiella parvula HOM05D005956 ORTHO05D007197 1.7e-72 277.3 307 49.2
Phvul.005G185600 Phaseolus vulgaris HOM05D005956 ORTHO05D007197 3.8e-72 276.2 312 44.2
LjContig00482g0022414 Lotus japonicus HOM05D005956 ORTHO05D007197 3.2e-71 273.1 309 51.8
A07p44100 Brassica napus HOM05D000309 ORTHO05D007197 5.5e-71 272.3 308 48.7
Migut.D02038 Erythranthe guttata HOM05D005956 ORTHO05D007197 5.5e-71 272.3 311 49.8
SGA_v2.0_scaffold69G23343 Striga asiatica HOM05D005956 ORTHO05D007197 3.5e-70 269.6 310 50.0
Cc07_g21430 Coffea canephora HOM05D005956 ORTHO05D007197 6.1e-70 268.9 307 54.7
ClCG03G000530 Citrullus lanatus HOM05D005956 ORTHO05D007197 1.8e-69 267.3 307 52.1
PSO063G0021 Papaver somniferum HOM05D005956 ORTHO05D007197 1.8e-69 267.3 308 49.0
Sc05g0006980 Simmondsia chinensis HOM05D005956 ORTHO05D007197 1.8e-69 267.3 308 49.4
VMungo1080G0145 Vigna mungo HOM05D005956 ORTHO05D007197 2.3e-69 266.9 316 43.7
BcaB03g16055 Brassica carinata HOM05D005956 ORTHO05D007197 6.7e-69 265.4 307 47.9
BcaC08g47440 Brassica carinata HOM05D005956 ORTHO05D007197 9.7e-68 261.5 308 47.7
CDE02G2643 Ceratophyllum demersum HOM05D005956 ORTHO05D007197 9.7e-68 261.5 275 52.7
THA.LOC104812335 Tarenaya hassleriana HOM05D005956 ORTHO05D007197 9.7e-68 261.5 307 48.9
BolC6t40300H Brassica oleracea HOM05D000163 ORTHO05D000219 2.2e-67 260.4 308 47.4
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 2.2e-67 260.4 311 49.5
Hma1.2p1_1111F.1_g258470 Hydrangea macrophylla HOM05D005956 ORTHO05D007197 5.3e-66 255.8 308 49.7
Glyma.15G000800 Glycine max HOM05D005956 ORTHO05D007197 2.6e-65 253.4 310 49.4
Lalb_Chr24g0392721 Lupinus albus HOM05D005956 ORTHO05D007197 2.6e-65 253.4 309 48.9
Lsat_1_v5_gn_4_106240 Lactuca sativa HOM05D005956 ORTHO05D007197 4.5e-65 252.7 307 47.6
Ah.05g168390 Amaranthus hybridus HOM05D005956 ORTHO05D007197 1.7e-64 250.8 304 47.7
SGA_v2.0_scaffold115G32115 Striga asiatica HOM05D005956 ORTHO05D007197 6.5e-64 248.8 329 46.5
TPR.G21350 Trifolium pratense HOM05D005956 ORTHO05D007197 6.5e-64 248.8 311 47.9
Medtr6g003960 Medicago truncatula HOM05D005956 ORTHO05D007197 1.1e-63 248.1 306 49.3
Lj7A719T46 Lonicera japonica HOM05D005956 ORTHO05D007197 2.1e-62 243.8 308 47.1
ATR0626G219 Amborella trichopoda HOM05D005956 ORTHO05D007197 1.4e-61 241.1 308 50.6
SalBow8G3086 Salvia bowleyana HOM05D005956 ORTHO05D007197 7.4e-60 235.3 311 46.0
Oeu039938.1 Olea europaea HOM05D005956 ORTHO05D007197 9.7e-60 235.0 310 45.2
HanXRQChr15g0497231 Helianthus annuus HOM05D005956 ORTHO05D007197 6.3e-59 232.3 309 44.0
Hma1.2p1_1111F.1_g258480 Hydrangea macrophylla HOM05D005956 ORTHO05D007197 1.5e-57 227.6 270 50.4
DCAR_030820 Daucus carota HOM05D005956 ORTHO05D007197 3.4e-57 226.5 242 53.3
AT1G78930 Arabidopsis thaliana HOM05D005956 ORTHO05D007197 5.9e-57 225.7 307 47.9
Ca_00996_v3 Cicer arietinum L. HOM05D005956 ORTHO05D007197 5.0e-56 222.6 249 46.2
Psat5g306040 Pisum sativum HOM05D005956 ORTHO05D007197 1.1e-55 221.5 249 44.6
CARHR072540 Cardamine hirsuta HOM05D005956 ORTHO05D007197 3.6e-54 216.5 209 54.1
Thhalv10018313m.g Eutrema salsugineum HOM05D005956 ORTHO05D007197 3.6e-54 216.5 255 47.1
AL2G39370 Arabidopsis lyrata HOM05D005956 ORTHO05D007197 3.0e-53 213.4 307 46.3
Actinidia24382 Actinidia chinensis HOM05D005956 ORTHO05D007197 2.2e-51 207.2 254 49.6
MBI16_g37212_MAGBIO Magnolia biondii HOM05D005956 ORTHO05D007197 5.3e-50 202.6 306 43.5
Dinv08767 Davidia involucrata HOM05D005956 ORTHO05D007197 4.5e-49 199.5 259 48.3
Zm00001eb000010 Zea mays HOM05D005956 ORTHO05D007197 7.7e-49 198.7 308 41.6
Nn2g12784 Nelumbo nucifera HOM05D005956 ORTHO05D007197 4.2e-47 193.0 304 40.1
Aqoxy7G02692 Aquilegia oxysepala HOM05D005956 ORTHO05D007197 3.6e-46 189.9 307 42.3
MBI16_g10330_MAGBIO Magnolia biondii HOM05D005956 ORTHO05D007197 3.0e-45 186.8 247 46.2
Os09g0560100 Oryza sativa ssp. japonica HOM05D005956 ORTHO05D007197 2.8e-43 180.3 306 40.8
HPP92_000245 Vanilla planifolia HOM05D005956 ORTHO05D007197 3.1e-42 176.8 306 38.2
ECA233G3598 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.4e-37 161.4 135 60.7
Zm00001eb320340 Zea mays HOM05D005956 ORTHO05D007197 9.1e-34 148.7 148 50.7
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 2.0e-33 147.5 192 46.4
MD09G1167300 Malus domestica HOM05D005956 ORTHO05D007197 8.0e-30 135.6 125 60.8
SEGI_15409 Sequoiadendron giganteum HOM05D005956 ORTHO05D007197 1.2e-28 131.7 158 41.8
MBI16_g00686_MAGBIO Magnolia biondii HOM05D005956 ORTHO05D007197 4.9e-27 126.3 200 42.5
SGA_v2.0_scaffold1097G53840 Striga asiatica HOM05D005956 ORTHO05D007197 4.1e-26 123.2 108 55.6
SEGI_03409 Sequoiadendron giganteum HOM05D005956 ORTHO05D007197 1.6e-25 121.3 149 41.6
Nitab4.5_0005679g0030 Nicotiana tabacum HOM05D005956 ORTHO05D007197 2.3e-21 107.5 90 63.3
AagrBONN_evm.TU.Sc2ySwM_368.2861 Anthoceros agrestis HOM05D005956 ORTHO05D007197 8.3e-19 99.0 135 36.3
Mapoly0216s0005 Marchantia polymorpha HOM05D005956 ORTHO05D007197 1.7e-16 91.3 140 32.9
CBR_g20999 Chara braunii HOM05D005956 ORTHO05D001299 1.9e-15 87.8 135 34.1
MD09G1167200 Malus domestica HOM05D005956 ORTHO05D007197 1.6e-14 84.7 160 38.1
Pp3c18_18510 Physcomitrium patens HOM05D005956 ORTHO05D007197 2.8e-14 84.0 132 34.1
arahy.Tifrunner.gnm1.ann1.X8CU4B Arachis hypogaea HOM05D005956 ORTHO05D007197 5.2e-13 79.7 86 46.5
Gohir.A06G112700 Gossypium hirsutum HOM05D005956 ORTHO05D007197 1.2e-12 78.6 74 56.8
arahy.Tifrunner.gnm1.ann1.DBZ4H1 Arachis hypogaea HOM05D005956 ORTHO05D007197 2.2e-11 74.3 85 48.2
Glyma.06G230200 Glycine max HOM05D005956 ORTHO05D007197 2.9e-11 73.9 74 51.4
arahy.Tifrunner.gnm1.ann1.X81K0T Arachis hypogaea HOM05D005956 ORTHO05D007197 1.2e-09 68.6 54 57.4
Psat0s410g0120 Pisum sativum HOM05D005956 ORTHO05D007197 1.2e-09 68.6 77 46.8
arahy.Tifrunner.gnm1.ann1.85VD00 Arachis hypogaea HOM05D005956 ORTHO05D007197 2.5e-07 60.8 74 43.2
PGR083G1273 Punica granatum HOM05D007385 ORTHO05D009349 3.6e-06 57.0 148 27.7


User provided reference genes

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