Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.258 Acer truncatum HOM05D000974 ORTHO05D007456 4.5e-124 448.4 304 100.0
Ciclev10005489m.g Citrus clementina HOM05D000974 ORTHO05D007456 2.0e-92 343.2 308 64.0
Manes.06G157800 Manihot esculenta HOM05D000974 ORTHO05D007456 4.6e-92 342.0 302 60.9
Gohir.D09G178500 Gossypium hirsutum HOM05D000974 ORTHO05D007456 4.3e-90 335.5 304 61.8
Gorai.006G200500 Gossypium raimondii HOM05D000974 ORTHO05D007456 9.5e-90 334.3 304 62.5
MD07G1285800 Malus domestica HOM05D000974 ORTHO05D007456 1.6e-89 333.6 311 59.8
TWI39G1278 Tripterygium wilfordii HOM05D000974 ORTHO05D007456 2.1e-89 333.2 304 60.5
Thecc.03G193600 Theobroma cacao HOM05D000974 ORTHO05D007456 3.6e-89 332.4 302 61.3
GSVIVG01028702001 Vitis vinifera HOM05D000974 ORTHO05D007456 3.6e-89 332.4 303 61.4
Potri.015G021100 Populus trichocarpa HOM05D000974 ORTHO05D007456 8.0e-89 331.3 302 60.9
Gohir.A09G183700 Gossypium hirsutum HOM05D000974 ORTHO05D007456 2.3e-88 329.7 304 62.2
Potri.015G021400 Populus trichocarpa HOM05D000974 ORTHO05D007456 3.1e-88 329.3 302 60.9
Potri.012G031000 Populus trichocarpa HOM05D000974 ORTHO05D007456 4.0e-88 328.9 304 59.9
TAR636G3288 Trochodendron aralioides HOM05D000974 ORTHO05D007456 4.0e-88 328.9 304 68.4
Actinidia34202 Actinidia chinensis HOM05D000974 ORTHO05D007456 5.2e-88 328.6 304 66.1
FAN10G1776 Fragaria x ananassa HOM05D000974 ORTHO05D007456 6.8e-88 328.2 307 59.3
FAN06G0673 Fragaria x ananassa HOM05D000974 ORTHO05D007456 3.4e-87 325.9 307 58.6
FAN06G4709 Fragaria x ananassa HOM05D000974 ORTHO05D007456 3.4e-87 325.9 307 58.6
FvH4_7g31090 Fragaria vesca HOM05D000974 ORTHO05D007456 4.4e-87 325.5 307 58.6
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 5.8e-87 325.1 304 61.2
PGR142G2075 Punica granatum HOM05D000974 ORTHO05D007456 5.8e-87 325.1 306 58.2
Haze_00118 Corylus avellana HOM05D000974 ORTHO05D007456 1.3e-86 323.9 304 65.5
Dinv28331 Davidia involucrata HOM05D000974 ORTHO05D007456 1.3e-86 323.9 253 66.8
COL.COLO4_35640 Corchorus olitorius HOM05D000974 ORTHO05D007456 6.4e-86 321.6 304 61.8
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 8.3e-86 321.2 303 58.7
CSS0027071 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D007456 1.4e-85 320.5 306 60.1
Lalb_Chr11g0066601 Lupinus albus HOM05D000974 ORTHO05D007456 5.4e-85 318.5 304 57.2
MD01G1215900 Malus domestica HOM05D000974 ORTHO05D007456 7.1e-85 318.2 311 57.2
DCAR_020306 Daucus carota HOM05D000974 ORTHO05D007456 9.2e-85 317.8 305 57.0
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 9.2e-85 317.8 303 58.4
arahy.Tifrunner.gnm1.ann1.D5FDUQ Arachis hypogaea HOM05D000974 ORTHO05D007456 1.2e-84 317.4 303 56.4
arahy.Tifrunner.gnm1.ann1.LG8YER Arachis hypogaea HOM05D000974 ORTHO05D007456 1.2e-84 317.4 303 56.4
CsaV3_5G000660 Cucumis sativus L. HOM05D000974 ORTHO05D007456 1.6e-84 317.0 304 56.9
Glyma.06G125900 Glycine max HOM05D000974 ORTHO05D007456 2.1e-84 316.6 303 54.8
RcHm_v2.0_Chr1g0380171 Rosa chinensis HOM05D000974 ORTHO05D007456 2.1e-84 316.6 302 58.3
Aqoxy7G00132 Aquilegia oxysepala HOM05D000974 ORTHO05D007456 3.5e-84 315.8 305 62.6
TAR375G0325 Trochodendron aralioides HOM05D000974 ORTHO05D007456 3.5e-84 315.8 306 72.9
Rhsim03G0199900 Rhododendron simsii HOM05D000974 ORTHO05D007456 7.8e-84 314.7 303 66.0
Nitab4.5_0005625g0010 Nicotiana tabacum HOM05D000974 ORTHO05D007456 1.0e-83 314.3 304 64.1
Cfa016368 Carpinus fangiana HOM05D000974 ORTHO05D007456 2.3e-83 313.2 309 72.5
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 3.9e-83 312.4 301 57.8
TPR.G17305 Trifolium pratense HOM05D000974 ORTHO05D007456 3.9e-83 312.4 302 58.6
ClCG01G000560 Citrullus lanatus HOM05D000974 ORTHO05D007456 8.6e-83 311.2 304 56.2
Nitab4.5_0002589g0050 Nicotiana tabacum HOM05D000974 ORTHO05D007456 1.9e-82 310.1 302 64.6
Glyma.04G238050 Glycine max HOM05D000974 ORTHO05D007456 2.5e-82 309.7 303 54.1
vmacro06564 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.2e-81 307.4 342 52.0
CANSAT21G0519 Cannabis sativa HOM05D000974 ORTHO05D007456 1.6e-81 307.0 313 61.3
vmacro10108 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 1.6e-81 307.0 304 56.6
Sabra12G0020600 Salix brachista HOM05D000974 ORTHO05D007456 4.7e-81 305.4 315 54.9
Rhsim09G0204100 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.3e-80 303.1 300 56.0
AUR62006147 Chenopodium quinoa HOM05D000974 ORTHO05D007456 3.1e-80 302.8 308 55.8
Oeu060978.1 Olea europaea HOM05D000974 ORTHO05D007456 8.9e-80 301.2 304 55.6
EL10Ac3g05342 Beta vulgaris HOM05D000974 ORTHO05D007456 1.5e-79 300.4 315 55.9
Medtr3g090955 Medicago truncatula HOM05D000974 ORTHO05D007456 1.5e-79 300.4 304 54.3
Peaxi162Scf00904g00123 Petunia axillaris HOM05D000974 ORTHO05D007456 2.0e-79 300.1 304 63.2
DCAR_014533 Daucus carota HOM05D000974 ORTHO05D007456 4.4e-79 298.9 304 71.4
Cpa.g.sc34.147 Carica papaya HOM05D000974 ORTHO05D007456 5.8e-79 298.5 304 60.9
MBI07_g34227_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 2.9e-78 296.2 305 69.8
Phvul.009G137800 Phaseolus vulgaris HOM05D000974 ORTHO05D007456 2.9e-78 296.2 303 52.8
Migut.F00239 Erythranthe guttata HOM05D000974 ORTHO05D007456 4.9e-78 295.4 311 57.6
SalBow4G2102 Salvia bowleyana HOM05D000974 ORTHO05D007456 4.9e-78 295.4 304 57.2
Sed0023834 Sechium edule HOM05D000974 ORTHO05D007456 8.3e-78 294.7 304 53.6
Cc02_g01830 Coffea canephora HOM05D000974 ORTHO05D007456 1.1e-77 294.3 304 54.3
VMungo1309G2916 Vigna mungo HOM05D000974 ORTHO05D007456 1.9e-77 293.5 307 52.1
SalBow4G1511 Salvia bowleyana HOM05D000974 ORTHO05D007456 5.4e-77 292.0 304 67.8
Carub.0006s2186 Capsella rubella HOM05D000974 ORTHO05D007456 1.6e-76 290.4 315 57.5
A06p34970 Brassica napus HOM05D000974 ORTHO05D007456 6.0e-76 288.5 316 52.2
C07p43580 Brassica napus HOM05D000974 ORTHO05D007456 6.0e-76 288.5 316 52.2
BolC7t44885H Brassica oleracea HOM05D000974 ORTHO05D007456 6.0e-76 288.5 316 52.2
BraA06t26421Z Brassica rapa HOM05D000974 ORTHO05D007456 6.0e-76 288.5 316 52.2
Thhalv10005277m.g Eutrema salsugineum HOM05D000974 ORTHO05D007456 6.0e-76 288.5 316 51.6
BcaNung01815 Brassica carinata HOM05D000974 ORTHO05D007456 3.0e-75 286.2 316 51.9
BcaNung01212 Brassica carinata HOM05D000974 ORTHO05D007456 5.1e-75 285.4 314 52.2
PSO135G0499 Papaver somniferum HOM05D000974 ORTHO05D007456 8.6e-75 284.6 307 52.8
PSO384G1506 Papaver somniferum HOM05D000974 ORTHO05D007456 1.1e-74 284.3 306 52.3
SGA_v2.0_scaffold192G40573 Striga asiatica HOM05D000974 ORTHO05D007456 1.5e-74 283.9 308 51.9
AL6G35490 Arabidopsis lyrata HOM05D000974 ORTHO05D007456 1.2e-73 280.8 316 50.9
Sp2g23180 Schrenkiella parvula HOM05D000974 ORTHO05D007456 2.1e-73 280.0 317 51.7
AT5G24130 Arabidopsis thaliana HOM05D000974 ORTHO05D007456 2.8e-73 279.6 315 50.8
CARHR189450 Cardamine hirsuta HOM05D000974 ORTHO05D007456 2.8e-73 279.6 316 50.6
Lsat_1_v5_gn_9_57980 Lactuca sativa HOM05D000974 ORTHO05D007456 4.7e-73 278.9 307 53.7
THA.LOC104821367 Tarenaya hassleriana HOM05D000974 ORTHO05D007456 4.7e-73 278.9 308 52.9
AUR62019342 Chenopodium quinoa HOM05D000974 ORTHO05D007456 4.0e-72 275.8 304 52.6
ECA232G4254 Erigeron canadensis HOM05D000974 ORTHO05D007456 6.8e-72 275.0 317 55.5
HanXRQChr09g0253031 Helianthus annuus HOM05D000974 ORTHO05D007456 8.9e-72 274.6 293 56.7
Aa31LG11G3400 Aethionema arabicum HOM05D000974 ORTHO05D007456 4.4e-71 272.3 312 50.3
Lj1g0000480 Lotus japonicus HOM05D000974 ORTHO05D007456 1.7e-70 270.4 301 50.2
Psat5g079560 Pisum sativum HOM05D000974 ORTHO05D007456 8.4e-70 268.1 303 50.8
Duzib084G1361 Durio zibethinus HOM05D000974 ORTHO05D007456 7.1e-69 265.0 306 58.5
Lj1A1013G39 Lonicera japonica HOM05D000974 ORTHO05D007456 1.2e-68 264.2 304 52.6
Nn1g01835 Nelumbo nucifera HOM05D000974 ORTHO05D007456 6.0e-68 261.9 307 65.1
QL09p010742 Quercus lobata HOM05D000974 ORTHO05D007456 6.0e-68 261.9 242 77.3
Potri.015G021300 Populus trichocarpa HOM05D000974 ORTHO05D007456 7.8e-68 261.5 177 75.1
Lsat_1_v5_gn_2_134181 Lactuca sativa HOM05D000974 ORTHO05D007456 1.1e-66 257.7 264 51.1
unitig_747.g21851 Utricularia gibba HOM05D000974 ORTHO05D007456 1.6e-65 253.8 265 53.6
HanXRQChr14g0462881 Helianthus annuus HOM05D000974 ORTHO05D007456 2.4e-64 250.0 257 52.9
Oeu060979.1 Olea europaea HOM05D000974 ORTHO05D007456 5.8e-63 245.4 177 70.1
Rhsim09G0204200 Rhododendron simsii HOM05D000974 ORTHO05D007456 7.9e-60 235.0 259 50.2
HPP92_005207 Vanilla planifolia HOM05D000974 ORTHO05D007456 2.5e-58 229.9 309 48.5
CDE10G0850 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 1.4e-56 224.2 303 59.1
Lj3A909T48 Lonicera japonica HOM05D000974 ORTHO05D007456 1.5e-55 220.7 266 49.6
Zm00001eb238160 Zea mays HOM05D000974 ORTHO05D007456 1.6e-49 200.7 311 42.4
CiPaw.05G257400 Carya illinoinensis HOM05D000974 ORTHO05D007456 6.0e-44 182.2 134 70.1
Os02g0257200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 6.0e-44 182.2 272 60.3
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 1.3e-43 181.0 227 45.8
AagrBONN_evm.TU.Sc2ySwM_117.3541 Anthoceros agrestis HOM05D000974 ORTHO05D007456 7.4e-42 175.3 268 42.5
Zm00001eb345000 Zea mays HOM05D000974 ORTHO05D007456 2.6e-39 166.8 262 41.2
MBI07_g45742_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 2.9e-38 163.3 305 39.3
Os05g0586700 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 3.2e-37 159.8 295 37.3
Oeu060977.1 Olea europaea HOM05D000974 ORTHO05D007456 7.2e-37 158.7 119 68.9
Mapoly0123s0011 Marchantia polymorpha HOM05D000974 ORTHO05D007456 9.3e-37 158.3 263 39.2
Lalb_Chr08g0240561 Lupinus albus HOM05D000974 ORTHO05D007456 3.3e-34 149.8 126 59.5
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 3.1e-32 143.3 177 45.8
Rhsim04G0082700 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.5e-31 141.0 177 45.2
SMO347G0394 Selaginella moellendorffii HOM05D000974 ORTHO05D007456 1.5e-31 141.0 181 46.4
Sopen03g003300 Solanum pennellii HOM05D000974 ORTHO05D007456 5.9e-31 139.0 188 58.0
Pp3c2_19140 Physcomitrium patens HOM05D000974 ORTHO05D007456 7.7e-31 138.7 263 36.1
Actinidia08630 Actinidia chinensis HOM05D000974 ORTHO05D007456 2.2e-30 137.1 112 67.9
PGSC0003DMG400009074 Solanum tuberosum HOM05D000974 ORTHO05D007456 1.4e-29 134.4 136 59.6
ATR0589G055 Amborella trichopoda HOM05D000974 ORTHO05D007456 2.8e-25 120.2 120 56.7
Hma1.2p1_1655F.1_g295980 Hydrangea macrophylla HOM05D000974 ORTHO05D007456 1.1e-24 118.2 188 45.7
Atru.chr1.262 Acer truncatum HOM05D000974 ORTHO05D007456 3.1e-24 116.7 82 95.1
Pp3c3_31670 Physcomitrium patens HOM05D000974 ORTHO05D007456 2.2e-22 110.5 159 47.2
Lalb_Chr08g0240551 Lupinus albus HOM05D000974 ORTHO05D007456 7.2e-21 105.5 98 55.1
FAN01G0307 Fragaria x ananassa HOM05D000974 ORTHO05D007456 3.0e-19 100.1 307 31.6
TAR629G1462 Trochodendron aralioides HOM05D000974 ORTHO05D007456 6.7e-19 99.0 60 71.7
Lalb_Chr08g0240541 Lupinus albus HOM05D000974 ORTHO05D007456 9.1e-16 88.6 82 56.1
vmacro10109 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 7.7e-15 85.5 160 34.4
CiPaw.05G257300 Carya illinoinensis HOM05D000974 ORTHO05D007456 3.0e-11 73.6 83 53.0
ATR0589G008 Amborella trichopoda HOM05D000974 ORTHO05D007456 2.4e-08 63.9 84 47.6
CDE10G0750 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 3.1e-08 63.5 79 48.1
COL.COLO4_02792 Corchorus olitorius HOM05D000974 ORTHO05D007456 2.9e-06 57.0 73 64.4
DCAR_022594 Daucus carota HOM05D000974 ORTHO05D007456 3.8e-06 56.6 73 52.1


User provided reference genes

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