Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.2350 Acer truncatum HOM05D005994 ORTHO05D007322 1.9e-55 218.8 101 100.0
Thecc.06G236600 Theobroma cacao HOM05D005994 ORTHO05D007322 2.1e-38 162.2 106 78.3
Ciclev10016738m.g Citrus clementina HOM05D005994 ORTHO05D007322 4.8e-38 161.0 130 66.9
Duzib235G0800 Durio zibethinus HOM05D005994 ORTHO05D007322 8.2e-38 160.2 106 76.4
Gohir.D06G216900 Gossypium hirsutum HOM05D005994 ORTHO05D007322 2.4e-37 158.7 106 76.4
Gorai.010G249300 Gossypium raimondii HOM05D005994 ORTHO05D007322 2.4e-37 158.7 106 76.4
Potri.006G016300 Populus trichocarpa HOM05D005994 ORTHO05D007322 5.3e-37 157.5 106 75.5
Gohir.A06G204600 Gossypium hirsutum HOM05D005994 ORTHO05D007322 6.9e-37 157.1 106 75.5
COL.COLO4_07784 Corchorus olitorius HOM05D005994 ORTHO05D007322 9.0e-37 156.8 106 75.5
THA.LOC104815483 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 2.0e-36 155.6 107 72.9
Duzib192G0253 Durio zibethinus HOM05D005994 ORTHO05D007322 4.5e-36 154.5 103 74.8
Manes.09G081660 Manihot esculenta HOM05D005994 ORTHO05D007322 5.9e-36 154.1 106 73.6
C01p26360 Brassica napus HOM05D005994 ORTHO05D007322 3.8e-35 151.4 103 73.8
TWI63G1647 Tripterygium wilfordii HOM05D005994 ORTHO05D007322 3.8e-35 151.4 110 71.8
BcaC09g50351 Brassica carinata HOM05D005994 ORTHO05D007322 5.0e-35 151.0 102 74.5
BcaNung00192 Brassica carinata HOM05D005994 ORTHO05D007322 5.0e-35 151.0 102 74.5
A01p21090 Brassica napus HOM05D005994 ORTHO05D007322 5.0e-35 151.0 102 74.5
BolC1t02582H Brassica oleracea HOM05D005994 ORTHO05D007322 5.0e-35 151.0 102 74.5
Sed0000308 Sechium edule HOM05D005994 ORTHO05D007322 6.5e-35 150.6 100 75.0
Sp7g15010 Schrenkiella parvula HOM05D005994 ORTHO05D007322 8.4e-35 150.2 107 72.9
TPR.G10599 Trifolium pratense HOM05D005994 ORTHO05D007322 1.1e-34 149.8 101 72.3
Sabra06G0011700 Salix brachista HOM05D005994 ORTHO05D007322 1.4e-34 149.4 101 75.2
AL7G38530 Arabidopsis lyrata HOM05D005994 ORTHO05D007322 1.9e-34 149.1 102 73.5
Carub.0007s2505 Capsella rubella HOM05D005994 ORTHO05D007322 1.9e-34 149.1 102 73.5
ClCG01G010630 Citrullus lanatus HOM05D005994 ORTHO05D007322 1.9e-34 149.1 100 75.0
Aa31LG2G12530 Aethionema arabicum HOM05D005994 ORTHO05D007322 2.5e-34 148.7 102 73.5
CANSAT56G3985 Cannabis sativa HOM05D005994 ORTHO05D007322 2.5e-34 148.7 100 74.0
CARHR222840 Cardamine hirsuta HOM05D005994 ORTHO05D007322 2.5e-34 148.7 107 72.0
Thhalv10026636m.g Eutrema salsugineum HOM05D005994 ORTHO05D007322 3.2e-34 148.3 107 72.0
MELO3C025540.2 Cucumis melo HOM05D005994 ORTHO05D007322 4.2e-34 147.9 100 74.0
THA.LOC104810390 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 4.2e-34 147.9 106 71.7
arahy.Tifrunner.gnm1.ann1.CR688Y Arachis hypogaea HOM05D005994 ORTHO05D007322 5.5e-34 147.5 101 73.3
arahy.Tifrunner.gnm1.ann1.R43TP7 Arachis hypogaea HOM05D005994 ORTHO05D007322 5.5e-34 147.5 101 73.3
Glyma.09G011900 Glycine max HOM05D005994 ORTHO05D007322 5.5e-34 147.5 101 72.3
Glyma.15G116500 Glycine max HOM05D005994 ORTHO05D007322 5.5e-34 147.5 101 72.3
HanXRQChr08g0213481 Helianthus annuus HOM05D005994 ORTHO05D007322 5.5e-34 147.5 100 73.0
Lj6g0002817 Lotus japonicus HOM05D005994 ORTHO05D007322 5.5e-34 147.5 101 72.3
Medtr2g026500 Medicago truncatula HOM05D005994 ORTHO05D007322 7.2e-34 147.1 101 71.3
Sed0000190 Sechium edule HOM05D005994 ORTHO05D007322 9.3e-34 146.7 100 73.0
Ca_00743_v3 Cicer arietinum L. HOM05D005994 ORTHO05D007322 1.2e-33 146.4 101 70.3
AT4G16450 Arabidopsis thaliana HOM05D005994 ORTHO05D007322 1.6e-33 146.0 102 72.5
A03p49850 Brassica napus HOM05D005994 ORTHO05D007322 1.6e-33 146.0 103 73.8
C07p47910 Brassica napus HOM05D005994 ORTHO05D007322 1.6e-33 146.0 103 73.8
BolC7t45314H Brassica oleracea HOM05D005994 ORTHO05D007322 1.6e-33 146.0 103 73.8
BraA03t14080Z Brassica rapa HOM05D005994 ORTHO05D007322 1.6e-33 146.0 103 73.8
Prupe.4G007400 Prunus persica HOM05D005994 ORTHO05D007322 2.1e-33 145.6 100 73.0
MSTRG.14470 Avicennia marina HOM05D005994 ORTHO05D007322 2.7e-33 145.2 100 73.0
Nitab4.5_0000163g0320 Nicotiana tabacum HOM05D005994 ORTHO05D007322 2.7e-33 145.2 101 71.3
Potri.016G009600 Populus trichocarpa HOM05D005994 ORTHO05D007322 3.5e-33 144.8 106 71.7
Cc05_g14690 Coffea canephora HOM05D005994 ORTHO05D007322 4.6e-33 144.4 100 72.0
PGR004G2260 Punica granatum HOM05D005994 ORTHO05D007322 4.6e-33 144.4 100 73.0
Phvul.006G141600 Phaseolus vulgaris HOM05D005994 ORTHO05D007322 6.1e-33 144.1 101 70.3
MD00G1058600 Malus domestica HOM05D005994 ORTHO05D007322 7.9e-33 143.7 100 72.0
Ah.06g181210 Amaranthus hybridus HOM05D005994 ORTHO05D007322 1.0e-32 143.3 101 71.3
BcaC06g33480 Brassica carinata HOM05D005994 ORTHO05D007322 1.0e-32 143.3 101 71.3
Nitab4.5_0001750g0060 Nicotiana tabacum HOM05D005994 ORTHO05D007322 1.0e-32 143.3 100 71.0
Sc03g0008000 Simmondsia chinensis HOM05D005994 ORTHO05D007322 1.0e-32 143.3 100 72.0
VMungo0540G2179 Vigna mungo HOM05D005994 ORTHO05D007322 1.0e-32 143.3 101 69.3
Aqoxy4G02214 Aquilegia oxysepala HOM05D005994 ORTHO05D007322 1.3e-32 142.9 103 69.9
EL10Ac4g07614 Beta vulgaris HOM05D005994 ORTHO05D007322 1.3e-32 142.9 101 71.3
CSS0045306 Camellia sinensis var. sinensis HOM05D005994 ORTHO05D007322 1.3e-32 142.9 100 72.0
ECA246G1213 Erigeron canadensis HOM05D005994 ORTHO05D007322 1.3e-32 142.9 100 71.0
unitig_747.g21642 Utricularia gibba HOM05D005994 ORTHO05D007322 1.3e-32 142.9 101 70.3
MSTRG.13010 Avicennia marina HOM05D005994 ORTHO05D007322 1.8e-32 142.5 100 71.0
Peaxi162Scf00955g00216 Petunia axillaris HOM05D005994 ORTHO05D007322 1.8e-32 142.5 100 70.0
GSVIVG01037779001 Vitis vinifera HOM05D005994 ORTHO05D007322 1.8e-32 142.5 100 72.0
Migut.M01676 Erythranthe guttata HOM05D005994 ORTHO05D007322 2.3e-32 142.1 100 71.0
Lalb_Chr03g0035721 Lupinus albus HOM05D005994 ORTHO05D007322 2.3e-32 142.1 100 71.0
Oeu005968.1 Olea europaea HOM05D005994 ORTHO05D007322 2.3e-32 142.1 110 65.5
Peaxi162Scf00285g00824 Petunia axillaris HOM05D005994 ORTHO05D007322 2.3e-32 142.1 94 75.5
Sopen07g033490 Solanum pennellii HOM05D005994 ORTHO05D007322 2.3e-32 142.1 97 73.2
MD10G1336200 Malus domestica HOM05D005994 ORTHO05D007322 3.0e-32 141.7 100 71.0
QL05p068624 Quercus lobata HOM05D005994 ORTHO05D007322 3.9e-32 141.4 100 69.0
QL05p068978 Quercus lobata HOM05D005994 ORTHO05D007322 3.9e-32 141.4 100 69.0
Rhsim06G0226700 Rhododendron simsii HOM05D005994 ORTHO05D007322 3.9e-32 141.4 100 71.0
SGA_v2.0_scaffold168G38531 Striga asiatica HOM05D005994 ORTHO05D007322 3.9e-32 141.4 107 68.2
vmacro11561 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 3.9e-32 141.4 100 71.0
Actinidia05033 Actinidia chinensis HOM05D005994 ORTHO05D007322 5.1e-32 141.0 100 70.0
Haze_06972 Corylus avellana HOM05D005994 ORTHO05D007322 5.1e-32 141.0 100 69.0
Hund23128 Selenicereus undatus HOM05D005994 ORTHO05D007322 5.1e-32 141.0 101 70.3
Cfa000074 Carpinus fangiana HOM05D005994 ORTHO05D007322 6.7e-32 140.6 100 69.0
Nitab4.5_0000461g0100 Nicotiana tabacum HOM05D005994 ORTHO05D007322 6.7e-32 140.6 98 71.4
Oeu005493.1 Olea europaea HOM05D005994 ORTHO05D007322 6.7e-32 140.6 107 67.3
Lalb_Chr19g0129971 Lupinus albus HOM05D005994 ORTHO05D007322 8.7e-32 140.2 100 69.0
FAN25G0933 Fragaria x ananassa HOM05D005994 ORTHO05D007322 1.1e-31 139.8 100 69.0
RcHm_v2.0_Chr5g0000881 Rosa chinensis HOM05D005994 ORTHO05D007322 1.1e-31 139.8 100 69.0
DCAR_013214 Daucus carota HOM05D005994 ORTHO05D007322 1.5e-31 139.4 107 66.4
vmacro09668 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 1.5e-31 139.4 100 69.0
AUR62017059 Chenopodium quinoa HOM05D005994 ORTHO05D007322 1.9e-31 139.0 101 68.3
Solyc07g065275.1 Solanum lycopersicum HOM05D005994 ORTHO05D007322 1.9e-31 139.0 95 71.6
PSO063G2191 Papaver somniferum HOM05D005994 ORTHO05D007322 2.5e-31 138.7 100 69.0
PGSC0003DMG400022186 Solanum tuberosum HOM05D005994 ORTHO05D007322 2.5e-31 138.7 97 71.1
Actinidia00094 Actinidia chinensis HOM05D005994 ORTHO05D007322 3.3e-31 138.3 100 69.0
CsaV3_1G017030 Cucumis sativus L. HOM05D005994 ORTHO05D007322 4.3e-31 137.9 94 72.3
CsaV3_UNG053450 Cucumis sativus L. HOM05D005994 ORTHO05D007322 4.3e-31 137.9 94 72.3
FAN21G1761 Fragaria x ananassa HOM05D005994 ORTHO05D007322 4.3e-31 137.9 100 68.0
Os08g0431500 Oryza sativa ssp. japonica HOM05D005994 ORTHO05D007322 4.3e-31 137.9 98 69.4
Psat1g178480 Pisum sativum HOM05D005994 ORTHO05D007322 5.7e-31 137.5 95 70.5
Eucgr.D00619 Eucalyptus grandis HOM05D005994 ORTHO05D007322 7.4e-31 137.1 95 71.6
Sabra16G0013400 Salix brachista HOM05D005994 ORTHO05D007322 9.7e-31 136.7 103 68.0
CiPaw.10G079600 Carya illinoinensis HOM05D005994 ORTHO05D007322 1.6e-30 136.0 95 71.6
Zm00001eb179550 Zea mays HOM05D005994 ORTHO05D007322 1.6e-30 136.0 101 68.3
AUR62040659 Chenopodium quinoa HOM05D005994 ORTHO05D007322 2.2e-30 135.6 101 67.3
Lsat_1_v5_gn_5_8041 Lactuca sativa HOM05D000063 ORTHO05D000906 2.2e-30 135.6 97 69.1
PSO832G1566 Papaver somniferum HOM05D005994 ORTHO05D007322 2.2e-30 135.6 100 68.0
CAN.G337.28 Capsicum annuum HOM05D005994 ORTHO05D007322 2.8e-30 135.2 97 69.1
CDE12G0176 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 4.8e-30 134.4 100 67.0
Ah.04g166430 Amaranthus hybridus HOM05D000063 ORTHO05D000906 6.3e-30 134.0 94 71.3
ATR0564G257 Amborella trichopoda HOM05D005994 ORTHO05D007322 1.8e-29 132.5 100 66.0
FvH4_3g00660 Fragaria vesca HOM05D005994 ORTHO05D007322 2.4e-29 132.1 94 69.1
CDE01G0018 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 5.3e-29 131.0 100 67.0
MBI04_g07210_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 5.9e-28 127.5 97 67.0
HPP92_013264 Vanilla planifolia HOM05D005994 ORTHO05D007322 5.0e-27 124.4 94 66.0
MBI04_g36325_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 4.1e-21 104.8 112 53.6
Cpa.g.sc3096.1 Carica papaya HOM05D005994 ORTHO05D007322 3.4e-20 101.7 49 95.9
Mapoly0008s0024 Marchantia polymorpha HOM05D005994 ORTHO05D007322 1.2e-17 93.2 95 52.6
SEGI_25373 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 1.4e-16 89.7 80 60.0
HanXRQChr17g0564261 Helianthus annuus HOM05D005994 ORTHO05D007322 5.1e-16 87.8 89 55.1
MCO11G626 Micromonas commoda HOM05D005994 ORTHO05D007322 1.1e-15 86.7 89 48.3
Pp3c6_28950 Physcomitrium patens HOM05D005994 ORTHO05D007322 2.6e-15 85.5 92 46.7
AagrBONN_evm.TU.Sc2ySwM_368.698 Anthoceros agrestis HOM05D005994 ORTHO05D007322 6.3e-14 80.9 90 46.7
AagrBONN_evm.TU.Sc2ySwM_117.3129 Anthoceros agrestis HOM05D005994 ORTHO05D007322 1.1e-13 80.1 92 47.8
SEGI_29999 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 4.1e-13 78.2 96 42.7
CBR_g41406 Chara braunii HOM05D005994 ORTHO05D007322 1.6e-12 76.3 90 47.8
SMO223G0003 Selaginella moellendorffii HOM05D005994 ORTHO05D007322 2.5e-10 68.9 89 42.7
Medtr2g097750 Medicago truncatula HOM05D005994 ORTHO05D007322 7.2e-10 67.4 59 59.3
Dinv10313 Davidia involucrata HOM05D005994 ORTHO05D007322 4.7e-09 64.7 96 43.8
Nn5g27130 Nelumbo nucifera HOM05D005994 ORTHO05D007322 8.0e-09 63.9 38 76.3
TAR626G0394 Trochodendron aralioides HOM05D005994 ORTHO05D007322 4.0e-08 61.6 33 81.8
Nitab4.5_0005540g0030 Nicotiana tabacum HOM05D005994 ORTHO05D007322 3.7e-06 55.1 32 78.1
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 6.3e-06 54.3 33 72.7


User provided reference genes

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