Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 1.1e-187 659.8 327 100.0
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 3.5e-90 335.9 386 55.4
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 9.9e-85 317.8 381 50.9
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.3e-81 307.4 384 49.0
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 5.1e-81 305.4 381 47.8
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 8.7e-81 304.7 384 49.0
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 1.5e-80 303.9 380 49.7
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 9.6e-80 301.2 381 48.6
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.6e-79 300.4 385 47.5
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 1.1e-78 297.7 386 47.9
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.1e-78 297.7 384 48.4
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.1e-78 297.7 384 48.4
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 9.0e-78 294.7 384 48.4
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 4.5e-77 292.4 384 48.4
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 7.6e-77 291.6 381 47.2
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.7e-76 290.4 385 47.5
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 2.2e-76 290.0 384 48.7
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 2.9e-76 289.7 384 47.9
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 1.1e-75 287.7 383 45.4
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 1.4e-75 287.3 384 46.6
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 2.4e-75 286.6 382 46.6
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 2.4e-75 286.6 381 47.5
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 2.4e-75 286.6 392 47.2
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 5.4e-75 285.4 381 46.2
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 7.1e-75 285.0 302 51.3
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 9.3e-75 284.6 378 46.6
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 2.1e-74 283.5 381 47.5
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 4.6e-74 282.3 381 47.2
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 4.6e-74 282.3 381 47.2
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 1.0e-73 281.2 384 47.1
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.0e-73 281.2 365 46.6
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 3.0e-73 279.6 386 45.9
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 3.0e-73 279.6 384 46.9
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 3.9e-73 279.3 384 45.1
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 3.9e-73 279.3 283 58.3
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 5.1e-73 278.9 384 45.3
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 6.7e-73 278.5 381 46.2
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 6.7e-73 278.5 387 45.2
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 6.7e-73 278.5 381 45.4
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 6.7e-73 278.5 387 45.2
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 1.1e-72 277.7 381 46.2
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 1.1e-72 277.7 386 45.1
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 1.9e-72 276.9 381 44.6
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.9e-72 276.9 381 44.4
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 1.9e-72 276.9 380 45.3
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.9e-72 276.9 282 57.4
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 2.5e-72 276.6 384 44.8
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 2.5e-72 276.6 384 44.5
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 2.5e-72 276.6 409 43.3
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 4.3e-72 275.8 384 44.3
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 5.6e-72 275.4 374 44.9
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 9.6e-72 274.6 396 43.9
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 9.6e-72 274.6 386 43.8
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 9.6e-72 274.6 381 44.9
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 1.3e-71 274.2 379 45.1
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 1.3e-71 274.2 381 44.6
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.6e-71 273.9 381 43.8
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 1.6e-71 273.9 378 44.4
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 2.1e-71 273.5 385 45.7
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 2.8e-71 273.1 381 45.4
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 2.8e-71 273.1 381 45.4
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 2.8e-71 273.1 381 45.4
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 2.8e-71 273.1 382 44.8
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 3.7e-71 272.7 381 45.4
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 3.7e-71 272.7 284 57.7
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 3.7e-71 272.7 381 45.4
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 4.8e-71 272.3 381 45.4
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 6.2e-71 271.9 384 46.4
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 3.1e-70 269.6 386 43.3
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 3.1e-70 269.6 380 46.8
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 6.9e-70 268.5 381 44.4
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 9.0e-70 268.1 284 56.3
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 9.0e-70 268.1 384 45.8
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 1.2e-69 267.7 379 44.3
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 1.5e-69 267.3 380 43.9
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 3.4e-69 266.2 386 44.8
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 3.4e-69 266.2 378 43.4
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 5.8e-69 265.4 384 44.5
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 7.6e-69 265.0 375 45.1
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 1.3e-68 264.2 282 53.9
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.3e-68 264.2 283 54.8
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 1.7e-68 263.8 283 55.5
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 2.9e-68 263.1 286 55.2
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 6.5e-68 261.9 286 54.9
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 8.4e-68 261.5 378 43.4
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 1.9e-67 260.4 283 54.1
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 7.1e-67 258.5 375 43.2
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 1.2e-66 257.7 385 43.1
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 1.6e-66 257.3 384 44.0
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 1.6e-66 257.3 387 44.7
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 1.6e-66 257.3 381 44.1
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 7.9e-66 255.0 370 44.9
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 7.9e-66 255.0 285 55.4
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 1.8e-65 253.8 381 43.0
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 2.3e-65 253.4 283 53.7
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 2.3e-65 253.4 381 43.8
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 3.0e-65 253.1 383 43.6
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 3.0e-65 253.1 381 43.3
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 3.0e-65 253.1 381 43.3
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 3.9e-65 252.7 285 53.3
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 5.1e-65 252.3 381 43.3
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 6.7e-65 251.9 380 44.2
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 1.9e-64 250.4 381 44.1
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 7.4e-64 248.4 380 41.6
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 3.7e-63 246.1 381 42.3
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 4.8e-63 245.7 304 50.7
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 2.4e-62 243.4 383 43.1
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 2.4e-62 243.4 386 43.0
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 2.4e-62 243.4 386 42.2
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 3.1e-62 243.0 384 42.2
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 5.3e-62 242.3 391 41.2
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 4.5e-61 239.2 374 42.5
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 5.0e-60 235.7 285 47.4
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 6.5e-60 235.3 435 38.6
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 1.8e-57 227.3 276 50.0
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 1.3e-55 221.1 284 49.3
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.8e-54 217.2 275 47.3
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 4.1e-54 216.1 286 46.5
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 5.9e-45 185.7 383 36.6
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 7.7e-45 185.3 375 35.7
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 4.7e-42 176.0 189 50.8
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 9.7e-40 168.3 179 54.2
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 6.1e-34 149.1 204 44.6
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 2.8e-31 140.2 337 31.8
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 3.7e-31 139.8 129 62.0
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 6.3e-31 139.0 170 47.6
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 5.5e-27 125.9 274 35.4
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.2e-26 124.8 225 36.0
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 3.0e-25 120.2 105 61.9
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 3.7e-23 113.2 374 28.9
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 1.7e-20 104.4 141 44.7
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 7.2e-19 99.0 129 47.3
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 7.2e-19 99.0 263 32.7
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.4e-17 94.7 58 84.5
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 7.5e-16 89.0 112 44.6
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 2.0e-13 80.9 195 32.8
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 7.2e-11 72.4 102 41.2
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.6e-10 71.2 145 33.1
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 2.2e-07 60.8 60 51.7


User provided reference genes

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