Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.2303 Acer truncatum HOM05D003857 ORTHO05D004454 3.5e-35 151.0 72 100.0
Atru.chr1.2307 Acer truncatum HOM05D003857 ORTHO05D004454 1.8e-23 112.1 94 66.0
TPR.G10580 Trifolium pratense HOM05D003857 ORTHO05D004454 3.4e-14 81.3 51 72.5
Thecc.06G238500 Theobroma cacao HOM05D003857 ORTHO05D004454 4.5e-14 80.9 53 67.9
Glyma.15G117900 Glycine max HOM05D003857 ORTHO05D004454 1.0e-13 79.7 51 72.5
Haze_07004 Corylus avellana HOM05D003857 ORTHO05D004454 3.8e-13 77.8 54 66.7
Potri.006G017900 Populus trichocarpa HOM05D003857 ORTHO05D004454 2.5e-12 75.1 54 64.8
CiPaw.09G107600 Carya illinoinensis HOM05D003857 ORTHO05D004454 3.2e-12 74.7 51 66.7
Glyma.09G013000 Glycine max HOM05D003857 ORTHO05D004454 3.2e-12 74.7 51 68.6
MD00G1056900 Malus domestica HOM05D003857 ORTHO05D004454 4.2e-12 74.3 49 63.3
Phvul.006G140400 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 4.2e-12 74.3 53 64.2
Cpa.g.c35467.2 Carica papaya HOM05D003857 ORTHO05D004454 7.2e-12 73.6 50 68.0
Sabra16G0011900 Salix brachista HOM05D003857 ORTHO05D004454 7.2e-12 73.6 46 73.9
TPR.G6011 Trifolium pratense HOM05D003857 ORTHO05D004454 9.4e-12 73.2 61 59.0
Gohir.D06G162600 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.2e-11 72.8 54 66.7
Gorai.010G189800 Gossypium raimondii HOM05D003857 ORTHO05D004454 1.2e-11 72.8 54 66.7
Duzib192G0644 Durio zibethinus HOM05D003857 ORTHO05D004454 1.6e-11 72.4 54 63.0
Sabra06G0013000 Salix brachista HOM05D003857 ORTHO05D004454 1.6e-11 72.4 52 67.3
Gohir.A06G156300 Gossypium hirsutum HOM05D003857 ORTHO05D004454 2.1e-11 72.0 54 66.7
Lj4g0009185 Lotus japonicus HOM05D003857 ORTHO05D004454 2.1e-11 72.0 51 66.7
Potri.016G007101 Populus trichocarpa HOM05D003857 ORTHO05D004454 2.1e-11 72.0 52 67.3
Glyma.07G267300 Glycine max HOM05D003857 ORTHO05D004454 2.7e-11 71.6 53 64.2
Prupe.4G005500 Prunus persica HOM05D003857 ORTHO05D004454 2.7e-11 71.6 49 61.2
Ciclev10017306m.g Citrus clementina HOM05D003857 ORTHO05D004454 3.6e-11 71.2 54 63.0
Phvul.003G085900 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 3.6e-11 71.2 53 62.3
TAR629G0922 Trochodendron aralioides HOM05D003857 ORTHO05D004454 6.1e-11 70.5 53 62.3
Lalb_Chr15g0088131 Lupinus albus HOM05D003857 ORTHO05D004454 7.9e-11 70.1 47 74.5
RcHm_v2.0_Chr5g0000661 Rosa chinensis HOM05D003857 ORTHO05D004454 7.9e-11 70.1 50 60.0
ClCG01G010960 Citrullus lanatus HOM05D003857 ORTHO05D004454 2.3e-10 68.6 53 56.6
FvH4_3g29390 Fragaria vesca HOM05D003857 ORTHO05D004454 2.3e-10 68.6 51 58.8
FAN16G1576 Fragaria x ananassa HOM05D003857 ORTHO05D004454 2.3e-10 68.6 51 58.8
FAN25G1727 Fragaria x ananassa HOM05D003857 ORTHO05D004454 2.3e-10 68.6 51 58.8
Glyma.17G006700 Glycine max HOM05D003857 ORTHO05D004454 3.9e-10 67.8 53 60.4
SalBow8G3453 Salvia bowleyana HOM05D003857 ORTHO05D004454 5.1e-10 67.4 49 65.3
FAN11G0618 Fragaria x ananassa HOM05D003857 ORTHO05D004454 6.7e-10 67.0 48 60.4
MD03G1183900 Malus domestica HOM05D003857 ORTHO05D004454 6.7e-10 67.0 53 58.5
MELO3C026073.2 Cucumis melo HOM05D003857 ORTHO05D004454 8.8e-10 66.6 53 56.6
Nn1g07497 Nelumbo nucifera HOM05D003857 ORTHO05D004454 8.8e-10 66.6 53 54.7
GSVIVG01003487001 Vitis vinifera HOM05D003857 ORTHO05D004454 8.8e-10 66.6 46 67.4
CsaV3_1G015520 Cucumis sativus L. HOM05D003857 ORTHO05D004454 1.1e-09 66.2 53 56.6
Sed0020326 Sechium edule HOM05D003857 ORTHO05D004454 1.1e-09 66.2 58 53.4
Manes.08G070300 Manihot esculenta HOM05D003857 ORTHO05D004454 2.0e-09 65.5 57 57.9
arahy.Tifrunner.gnm1.ann1.J6PND3 Arachis hypogaea HOM05D003857 ORTHO05D004454 4.3e-09 64.3 65 53.8
CiPaw.12G137500 Carya illinoinensis HOM05D003857 ORTHO05D004454 5.7e-09 63.9 54 59.3
FAN21G0934 Fragaria x ananassa HOM05D003857 ORTHO05D004454 5.7e-09 63.9 51 54.9
arahy.Tifrunner.gnm1.ann1.A9XG53 Arachis hypogaea HOM05D003857 ORTHO05D004454 7.4e-09 63.5 49 65.3
FAN25G3265 Fragaria x ananassa HOM05D003857 ORTHO05D004454 9.7e-09 63.2 50 58.0
MD11G1200800 Malus domestica HOM05D003857 ORTHO05D004454 9.7e-09 63.2 53 54.7
RcHm_v2.0_Chr5g0053811 Rosa chinensis HOM05D003857 ORTHO05D004454 1.7e-08 62.4 48 60.4
FvH4_3g00490 Fragaria vesca HOM05D003857 ORTHO05D004454 2.2e-08 62.0 50 58.0
HanXRQChr05g0161821 Helianthus annuus HOM05D003857 ORTHO05D004454 2.2e-08 62.0 55 52.7
DCAR_002236 Daucus carota HOM05D003857 ORTHO05D004454 2.8e-08 61.6 51 54.9
TWI38G0553 Tripterygium wilfordii HOM05D003857 ORTHO05D004454 3.7e-08 61.2 54 59.3
Sp7g14930 Schrenkiella parvula HOM05D003857 ORTHO05D004454 4.8e-08 60.8 46 65.2
AUR62017087 Chenopodium quinoa HOM05D003857 ORTHO05D004454 6.3e-08 60.5 51 56.9
QL08p004432 Quercus lobata HOM05D003857 ORTHO05D004454 6.3e-08 60.5 47 59.6
QL08p004552 Quercus lobata HOM05D003857 ORTHO05D004454 6.3e-08 60.5 47 59.6
PGSC0003DMG400022174 Solanum tuberosum HOM05D003857 ORTHO05D004454 6.3e-08 60.5 49 57.1
Manes.15G060900 Manihot esculenta HOM05D003857 ORTHO05D004454 8.2e-08 60.1 51 54.9
Thecc.07G015100 Theobroma cacao HOM05D003857 ORTHO05D004454 8.2e-08 60.1 54 57.4
Cc05_g14870 Coffea canephora HOM05D003857 ORTHO05D004454 1.4e-07 59.3 49 57.1
Aa31LG2G12460 Aethionema arabicum HOM05D003857 ORTHO05D004454 1.8e-07 58.9 53 52.8
AUR62036444 Chenopodium quinoa HOM05D003857 ORTHO05D004454 1.8e-07 58.9 51 54.9
COL.COLO4_31924 Corchorus olitorius HOM05D003857 ORTHO05D004454 1.8e-07 58.9 45 66.7
Solyc07g065460.1 Solanum lycopersicum HOM05D003857 ORTHO05D004454 1.8e-07 58.9 46 56.5
Sopen07g033670 Solanum pennellii HOM05D003857 ORTHO05D004454 1.8e-07 58.9 46 56.5
EL10Ac4g07592 Beta vulgaris HOM05D003857 ORTHO05D004454 2.4e-07 58.5 46 58.7
C01p26490 Brassica napus HOM05D003857 ORTHO05D004454 2.4e-07 58.5 46 60.9
Sabra16G0240200 Salix brachista HOM05D003857 ORTHO05D004454 2.4e-07 58.5 69 50.7
A01p21200 Brassica napus HOM05D003857 ORTHO05D004454 3.1e-07 58.2 46 60.9
BraA01t02029Z Brassica rapa HOM05D003857 ORTHO05D004454 3.1e-07 58.2 46 60.9
Manes.03G140433 Manihot esculenta HOM05D003857 ORTHO05D004454 3.1e-07 58.2 55 54.5
Manes.03G140500 Manihot esculenta HOM05D003857 ORTHO05D004454 3.1e-07 58.2 55 54.5
Oeu014353.1 Olea europaea HOM05D003857 ORTHO05D004454 3.1e-07 58.2 49 55.1
Medtr2g026575 Medicago truncatula HOM05D003857 ORTHO05D004454 4.1e-07 57.8 36 69.4
COL.COLO4_09818 Corchorus olitorius HOM05D003857 ORTHO05D004454 5.3e-07 57.4 54 55.6
Hma1.2p1_0036F.1_g022470 Hydrangea macrophylla HOM05D003857 ORTHO05D004454 5.3e-07 57.4 49 59.2
Rhsim13G0142200 Rhododendron simsii HOM05D003857 ORTHO05D004454 5.3e-07 57.4 46 54.3
Atru.chr2.3676 Acer truncatum HOM05D003857 ORTHO05D004454 6.9e-07 57.0 45 62.2
Aqoxy1G04245 Aquilegia oxysepala HOM05D003857 ORTHO05D004454 6.9e-07 57.0 45 66.7
AT4G16400 Arabidopsis thaliana HOM05D003857 ORTHO05D004454 6.9e-07 57.0 46 63.0
BcaNung00200 Brassica carinata HOM05D003857 ORTHO05D004454 6.9e-07 57.0 50 54.0
DCAR_030845 Daucus carota HOM05D003857 ORTHO05D004454 6.9e-07 57.0 51 52.9
Rhsim06G0228800 Rhododendron simsii HOM05D003857 ORTHO05D004454 6.9e-07 57.0 58 48.3
AL7G38610 Arabidopsis lyrata HOM05D003857 ORTHO05D004454 9.1e-07 56.6 46 63.0
BcaC09g50339 Brassica carinata HOM05D003857 ORTHO05D004454 9.1e-07 56.6 46 58.7
BolC1t02594H Brassica oleracea HOM05D003857 ORTHO05D004454 9.1e-07 56.6 46 58.7
Thhalv10027070m.g Eutrema salsugineum HOM05D003857 ORTHO05D004454 9.1e-07 56.6 48 56.2
C07p47840 Brassica napus HOM05D003857 ORTHO05D004454 1.2e-06 56.2 46 60.9
BolC7t45306H Brassica oleracea HOM05D003857 ORTHO05D004454 1.2e-06 56.2 46 60.9
Nn1g03204 Nelumbo nucifera HOM05D003857 ORTHO05D004454 1.2e-06 56.2 45 64.4
Prupe.4G242100 Prunus persica HOM05D003857 ORTHO05D004454 1.5e-06 55.8 53 54.7
TWI38G0111 Tripterygium wilfordii HOM05D003857 ORTHO05D004454 1.5e-06 55.8 36 69.4
CAN.G337.6 Capsicum annuum HOM05D003857 ORTHO05D004454 2.0e-06 55.5 46 54.3
Potri.001G366900 Populus trichocarpa HOM05D003857 ORTHO05D004454 2.0e-06 55.5 53 54.7
Actinidia05015 Actinidia chinensis HOM05D003857 ORTHO05D004454 2.6e-06 55.1 49 53.1
Actinidia35399 Actinidia chinensis HOM05D003857 ORTHO05D004454 2.6e-06 55.1 48 60.4
Carub.0007s2513 Capsella rubella HOM05D003857 ORTHO05D004454 2.6e-06 55.1 45 62.2
A08p12220 Brassica napus HOM05D003857 ORTHO05D004454 3.4e-06 54.7 46 56.5
BraA08t33236Z Brassica rapa HOM05D003857 ORTHO05D004454 3.4e-06 54.7 46 56.5
BcaC07g37984 Brassica carinata HOM05D003857 ORTHO05D004454 5.9e-06 53.9 45 57.8
A03p49780 Brassica napus HOM05D003857 ORTHO05D004454 5.9e-06 53.9 46 58.7
BolC8t48365H Brassica oleracea HOM05D003857 ORTHO05D004454 5.9e-06 53.9 45 57.8
BraA03t14073Z Brassica rapa HOM05D003857 ORTHO05D004454 5.9e-06 53.9 46 58.7
Oeu041436.1 Olea europaea HOM05D003857 ORTHO05D004454 7.7e-06 53.5 46 58.7


User provided reference genes

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