Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.2232 Acer truncatum HOM05D008403 ORTHO05D010317 4.7e-94 347.8 173 100.0
Atru.chr2.423 Acer truncatum HOM05D008403 ORTHO05D010317 6.2e-78 294.3 178 83.7
Atru.chr2.427 Acer truncatum HOM05D008403 ORTHO05D010317 9.3e-74 280.4 181 81.2
Atru.chr2.1377 Acer truncatum HOM05D008403 ORTHO05D010317 2.6e-60 235.7 174 72.4
Ciclev10017450m.g Citrus clementina HOM05D008403 ORTHO05D010317 1.4e-37 160.2 150 54.7
Cpa.g.sc27.190 Carica papaya HOM05D008403 ORTHO05D010317 6.7e-32 141.4 172 46.5
TWI31G1421 Tripterygium wilfordii HOM05D008403 ORTHO05D010317 2.0e-31 139.8 176 47.2
COL.COLO4_27522 Corchorus olitorius HOM05D008403 ORTHO05D010317 3.3e-31 139.0 177 44.1
FvH4_3g00110 Fragaria vesca HOM05D008403 ORTHO05D010317 7.4e-31 137.9 180 47.2
RcHm_v2.0_Chr5g0000141 Rosa chinensis HOM05D008403 ORTHO05D010317 1.7e-30 136.7 185 48.6
Duzib268G1784 Durio zibethinus HOM05D008403 ORTHO05D010317 2.2e-30 136.3 177 45.8
FAN25G0691 Fragaria x ananassa HOM05D000186 ORTHO05D001124 4.8e-30 135.2 181 47.5
CANSAT56G1928 Cannabis sativa HOM05D008403 ORTHO05D010317 5.3e-29 131.7 159 45.9
Prupe.4G001200 Prunus persica HOM05D008403 ORTHO05D010317 7.0e-29 131.3 159 47.8
Sabra08G0008100 Salix brachista HOM05D008403 ORTHO05D010317 2.0e-28 129.8 178 42.1
Lj6g0020324 Lotus japonicus HOM05D008403 ORTHO05D010317 5.9e-28 128.3 176 42.0
QL05p066293 Quercus lobata HOM05D008403 ORTHO05D010317 2.9e-27 125.9 171 45.0
Potri.008G013400 Populus trichocarpa HOM05D008403 ORTHO05D010317 8.5e-27 124.4 179 41.9
QL05p066264 Quercus lobata HOM05D008403 ORTHO05D010317 2.5e-26 122.9 174 42.0
CiPaw.09G112600 Carya illinoinensis HOM05D008403 ORTHO05D010317 3.2e-26 122.5 171 43.3
CiPaw.08G030100 Carya illinoinensis HOM05D008403 ORTHO05D010317 4.7e-25 118.6 171 42.7
PSO675G4416 Papaver somniferum HOM05D008403 ORTHO05D010317 8.0e-25 117.9 187 43.9
Potri.016G001600 Populus trichocarpa HOM05D008403 ORTHO05D010317 8.0e-25 117.9 152 45.4
Manes.08G015200 Manihot esculenta HOM05D008403 ORTHO05D010317 1.0e-24 117.5 178 40.4
Rhsim02G0087900 Rhododendron simsii HOM05D008403 ORTHO05D010317 2.0e-23 113.2 151 42.4
Aqoxy4G02379 Aquilegia oxysepala HOM05D008403 ORTHO05D010317 3.3e-23 112.5 183 39.3
CSS0029866 Camellia sinensis var. sinensis HOM05D008403 ORTHO05D010317 6.3e-22 108.2 172 41.3
PSO541G3674 Papaver somniferum HOM05D008403 ORTHO05D010317 1.4e-21 107.1 168 42.3
Oeu016936.1 Olea europaea HOM05D008403 ORTHO05D010317 2.0e-20 103.2 149 40.9
Lalb_Chr20g0119681 Lupinus albus HOM05D008403 ORTHO05D010317 6.5e-19 98.2 169 40.2
Actinidia04549 Actinidia chinensis HOM05D008403 ORTHO05D010317 1.9e-18 96.7 114 45.6
PGR004G1348 Punica granatum HOM05D008403 ORTHO05D010317 2.5e-18 96.3 148 37.2
PSO675G0961 Papaver somniferum HOM05D008403 ORTHO05D010317 5.5e-18 95.1 143 43.4
PSO732G0610 Papaver somniferum HOM05D008403 ORTHO05D010317 7.2e-18 94.7 157 38.9
Eucgr.D00968 Eucalyptus grandis HOM05D008403 ORTHO05D010317 9.4e-18 94.4 180 36.7
PSO732G0092 Papaver somniferum HOM05D008403 ORTHO05D010317 2.7e-17 92.8 121 45.5
PGR004G1501 Punica granatum HOM05D008403 ORTHO05D010317 2.7e-17 92.8 182 31.9
Rhsim02G0088000 Rhododendron simsii HOM05D008403 ORTHO05D010317 3.6e-17 92.4 178 37.1
PSO732G0094 Papaver somniferum HOM05D008403 ORTHO05D010317 4.7e-17 92.0 182 38.5
TAR627G0716 Trochodendron aralioides HOM05D008403 ORTHO05D010317 3.7e-14 82.4 153 37.3
Oeu017922.1 Olea europaea HOM05D008403 ORTHO05D010317 1.4e-13 80.5 130 36.2
PSO732G0418 Papaver somniferum HOM05D008403 ORTHO05D010317 1.8e-13 80.1 182 36.3
PSO732G0597 Papaver somniferum HOM05D008403 ORTHO05D010317 1.8e-13 80.1 116 41.4
Oeu002789.2 Olea europaea HOM05D008403 ORTHO05D010317 7.0e-13 78.2 160 34.4
SGA_v2.0_scaffold7G03659 Striga asiatica HOM05D008403 ORTHO05D010317 5.9e-12 75.1 181 29.3
MBI18_g04557_MAGBIO Magnolia biondii HOM05D008403 ORTHO05D010317 1.1e-10 70.9 172 31.4
Thecc.06G243800 Theobroma cacao HOM05D014554 ORTHO05D010317 1.1e-10 70.9 150 34.0
CiPaw.08G093400 Carya illinoinensis HOM05D003556 ORTHO05D003404 7.2e-10 68.2 147 32.0
Lalb_Chr15g0088411 Lupinus albus HOM05D008403 ORTHO05D010317 7.2e-10 68.2 79 40.5
SGA_v2.0_scaffold186G40151 Striga asiatica HOM05D008403 ORTHO05D010317 9.4e-10 67.8 142 30.3
Lj6g0019770 Lotus japonicus HOM05D000001 ORTHO05D010775 1.2e-09 67.4 86 47.7
Rhsim07G0095800 Rhododendron simsii HOM05D003146 ORTHO05D001819 2.1e-09 66.6 149 32.2
AL8G42030 Arabidopsis lyrata HOM05D004113 ORTHO05D005233 2.7e-09 66.2 184 29.3
Carub.0008s2541 Capsella rubella HOM05D004113 ORTHO05D005233 2.7e-09 66.2 184 31.5
Thecc.05G027500 Theobroma cacao HOM05D014554 ORTHO05D036092 6.1e-09 65.1 175 31.4
Thecc.02G296800 Theobroma cacao HOM05D008403 ORTHO05D010317 8.0e-09 64.7 89 44.9
AT5G64620 Arabidopsis thaliana HOM05D004113 ORTHO05D005233 1.4e-08 63.9 144 33.3
Dinv29548 Davidia involucrata HOM05D003146 ORTHO05D001819 1.4e-08 63.9 183 27.9
QL05p060436 Quercus lobata HOM05D012615 ORTHO05D010044 3.0e-08 62.8 138 30.4
Ciclev10003770m.g Citrus clementina HOM05D004894 ORTHO05D005689 4.0e-08 62.4 140 33.6
SGA_v2.0_scaffold186G40153 Striga asiatica HOM05D008403 ORTHO05D010317 4.0e-08 62.4 120 34.2
Nn1g08310 Nelumbo nucifera HOM05D008403 ORTHO05D010317 5.2e-08 62.0 158 28.5
TAR627G0557 Trochodendron aralioides HOM05D008403 ORTHO05D010317 1.2e-07 60.8 161 29.2
Cfa004856 Carpinus fangiana HOM05D012615 ORTHO05D010044 2.0e-07 60.1 139 28.1
PSO017G4824 Papaver somniferum HOM05D058508 ORTHO05D050220 2.0e-07 60.1 142 35.9
Actinidia18484 Actinidia chinensis HOM05D003146 ORTHO05D001819 2.6e-07 59.7 161 28.0
Thhalv10005004m.g Eutrema salsugineum HOM05D004113 ORTHO05D005233 3.4e-07 59.3 184 31.5
QL01p035229 Quercus lobata HOM05D012615 ORTHO05D010044 4.4e-07 58.9 116 30.2
RhsimUnG0017500 Rhododendron simsii HOM05D004113 ORTHO05D005233 5.7e-07 58.5 181 24.3
Cc11_g04920 Coffea canephora HOM05D003146 ORTHO05D001819 9.8e-07 57.8 181 27.1
MD13G1150200 Malus domestica HOM05D001578 ORTHO05D001207 9.8e-07 57.8 142 28.9
MBI07_g43317_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D001261 1.7e-06 57.0 115 30.4
MBI07_g46097_MAGBIO Magnolia biondii HOM05D011459 ORTHO05D013640 1.7e-06 57.0 115 30.4
Sp2g27680 Schrenkiella parvula HOM05D004113 ORTHO05D005233 1.7e-06 57.0 144 32.6
BcaB04g19979 Brassica carinata HOM05D004113 ORTHO05D005233 2.2e-06 56.6 102 35.3
Rhsim04G0244100 Rhododendron simsii HOM05D003146 ORTHO05D001819 2.2e-06 56.6 155 27.1
SGA_v2.0_scaffold47G17718 Striga asiatica HOM05D008403 ORTHO05D010317 2.2e-06 56.6 126 31.0
TAR627G0317 Trochodendron aralioides HOM05D008403 ORTHO05D010317 2.2e-06 56.6 112 31.2
BcaB02g09804 Brassica carinata HOM05D004113 ORTHO05D005233 3.7e-06 55.8 147 34.0
Sabra11G0000800 Salix brachista HOM05D003556 ORTHO05D003404 3.7e-06 55.8 190 30.5
Ah.01g010410 Amaranthus hybridus HOM05D001445 ORTHO05D001261 4.9e-06 55.5 107 29.0
MELO3C015291.2 Cucumis melo HOM05D003556 ORTHO05D003404 4.9e-06 55.5 160 24.4
AT3G17220 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 6.3e-06 55.1 143 28.7
BraA06t26077Z Brassica rapa HOM05D004113 ORTHO05D005233 8.3e-06 54.7 128 35.9
RcHm_v2.0_Chr6g0274541 Rosa chinensis HOM05D004894 ORTHO05D009560 8.3e-06 54.7 127 31.5
Sp3g15430 Schrenkiella parvula HOM05D003146 ORTHO05D001819 8.3e-06 54.7 141 28.4


User provided reference genes

Program Settings