Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 3.2e-209 731.5 359 100.0
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 5.6e-174 614.4 367 81.2
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 1.1e-164 583.6 365 77.8
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 2.2e-162 575.9 372 74.5
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 1.6e-160 569.7 373 74.0
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 7.9e-160 567.4 364 75.3
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 1.3e-159 566.6 370 74.9
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 2.5e-158 562.4 364 74.2
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 2.1e-157 559.3 370 73.0
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 2.8e-157 558.9 368 73.1
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 4.0e-156 555.1 369 72.6
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 6.9e-156 554.3 373 72.9
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.2e-155 553.5 373 72.7
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 2.9e-154 548.9 361 74.2
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.5e-154 547.7 373 72.1
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 8.7e-151 537.3 368 72.0
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 1.4e-148 530.0 361 72.0
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 5.3e-148 528.1 365 69.0
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 1.2e-147 526.9 365 68.5
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 5.9e-147 524.6 371 69.5
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 2.2e-146 522.7 359 70.8
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 2.2e-146 522.7 364 70.1
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 3.8e-146 521.9 365 67.9
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 8.5e-146 520.8 359 70.5
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 1.1e-145 520.4 371 68.7
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.5e-145 518.1 374 68.4
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 7.2e-145 517.7 371 67.7
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 9.4e-145 517.3 372 68.5
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 2.1e-144 516.2 365 67.9
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.6e-144 515.0 374 67.9
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 4.6e-144 515.0 366 69.9
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 6.1e-144 514.6 372 68.3
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 1.4e-143 513.5 372 68.0
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 1.8e-143 513.1 372 68.0
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.5e-142 510.0 374 67.9
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 2.0e-142 509.6 368 69.3
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 2.2e-141 506.1 380 67.4
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 2.8e-141 505.8 372 68.0
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 4.1e-140 501.9 359 66.9
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 4.1e-140 501.9 370 67.8
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 6.9e-140 501.1 352 71.0
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 5.9e-139 498.0 367 65.9
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 5.9e-139 498.0 367 65.9
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 7.7e-139 497.7 368 66.0
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 1.3e-138 496.9 367 65.7
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 3.8e-138 495.4 369 65.3
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 3.2e-137 492.3 371 64.7
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 4.2e-137 491.9 371 65.8
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 2.1e-136 489.6 361 66.8
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 2.1e-136 489.6 371 65.2
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 3.6e-136 488.8 377 65.5
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 4.7e-136 488.4 362 66.3
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 7.9e-136 487.6 371 65.8
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 1.5e-134 483.4 370 65.7
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 1.5e-134 483.4 369 65.6
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 2.8e-133 479.2 374 65.0
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 2.4e-132 476.1 375 64.5
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 2.4e-132 476.1 371 63.9
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 2.4e-132 476.1 372 64.8
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 4.1e-132 475.3 361 66.2
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 1.2e-131 473.8 378 63.5
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 3.5e-131 472.2 364 64.6
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 5.9e-131 471.5 363 65.6
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.0e-130 470.7 363 65.6
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 1.0e-130 470.7 369 64.8
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.3e-130 470.3 363 65.3
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 3.8e-130 468.8 359 66.9
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.1e-129 467.2 363 65.0
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.1e-129 467.2 363 65.0
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 4.2e-129 465.3 384 62.0
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.6e-128 462.2 372 60.5
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.0e-127 460.7 363 64.7
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 2.3e-127 459.5 365 64.4
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.0e-127 459.1 373 63.5
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 6.7e-127 458.0 350 66.0
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.1e-126 457.2 373 63.8
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 2.0e-126 456.4 364 64.6
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 3.3e-126 455.7 364 64.6
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 9.7e-126 454.1 363 61.4
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 3.7e-125 452.2 368 63.9
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.1e-124 450.7 359 60.4
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 5.3e-124 448.4 367 64.0
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 9.1e-124 447.6 360 66.7
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 1.2e-123 447.2 364 64.3
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 1.6e-123 446.8 362 65.5
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 1.0e-122 444.1 374 62.3
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 1.3e-122 443.7 366 62.6
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 6.5e-122 441.4 374 61.8
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 1.6e-120 436.8 366 60.9
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 1.4e-119 433.7 368 62.5
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 3.0e-119 432.6 360 60.6
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 4.0e-119 432.2 368 59.8
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 6.7e-119 431.4 365 61.6
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 2.6e-118 429.5 380 59.5
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 4.4e-118 428.7 365 60.0
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 4.8e-117 425.2 364 59.3
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 2.4e-116 422.9 360 60.6
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.9e-113 413.3 365 59.7
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 9.4e-113 411.0 381 56.4
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 4.4e-110 402.1 353 56.7
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 9.8e-110 401.0 357 58.8
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 3.7e-109 399.1 366 54.1
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 7.0e-108 394.8 350 58.6
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 4.1e-100 369.0 336 56.0
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 5.4e-100 368.6 336 56.0
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 4.1e-92 342.4 366 49.5
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 6.6e-90 335.1 458 42.6
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 5.2e-87 325.5 366 48.1
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.0e-82 311.2 290 53.4
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 6.6e-82 308.5 352 47.7
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 1.1e-81 307.8 291 55.7
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.2e-80 304.3 360 46.4
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 2.7e-75 286.6 374 43.0
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 7.8e-75 285.0 336 45.2
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 8.1e-72 275.0 340 44.7
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 1.3e-66 257.7 361 39.9
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 5.3e-63 245.7 229 59.4
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 9.0e-63 245.0 199 60.8
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 4.4e-62 242.7 182 64.3
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 2.9e-61 240.0 371 38.0
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 7.6e-54 215.3 202 50.0
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 6.0e-51 205.7 173 62.4
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 1.4e-47 194.5 261 39.1
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 3.4e-46 189.9 244 41.4
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.6e-43 181.0 130 65.4
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.6e-43 181.0 130 65.4
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 7.4e-41 172.2 163 54.6
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.6e-38 163.7 130 63.1
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 5.8e-38 162.5 144 56.9
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 4.6e-35 152.9 285 31.2
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 8.7e-34 148.7 93 69.9
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 1.3e-32 144.8 93 68.8
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.4e-31 141.4 93 66.7
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.9e-30 136.0 93 65.6
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.9e-29 133.7 98 63.3
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 7.9e-27 125.6 108 60.2
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 2.0e-25 120.9 241 39.8
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 1.4e-23 114.8 112 52.7
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 5.3e-23 112.8 286 26.9
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.2e-21 107.5 94 56.4
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 2.2e-21 107.5 94 56.4
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 4.2e-20 103.2 70 65.7
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 2.1e-19 100.9 93 61.3
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 9.1e-15 85.5 76 61.8
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 5.9e-14 82.8 64 67.2
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 1.7e-13 81.3 104 49.0
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 3.8e-13 80.1 59 67.8
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 1.2e-11 75.1 58 65.5
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 1.6e-11 74.7 76 50.0
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 6.1e-11 72.8 45 80.0


User provided reference genes

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