Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.2076 Acer truncatum HOM05D005324 ORTHO05D001185 1.9e-116 422.5 212 100.0
Atru.chr10.1416 Acer truncatum HOM05D005324 ORTHO05D001185 7.4e-57 224.6 266 45.9
Atru.chr3.3306 Acer truncatum HOM05D000477 ORTHO05D001185 3.1e-55 219.2 224 55.4
Atru.chr7.181 Acer truncatum HOM05D005324 ORTHO05D001185 1.6e-51 206.8 357 37.0
Atru.chr1.2372 Acer truncatum HOM05D005324 ORTHO05D001185 1.7e-45 186.8 103 85.4
Atru.chr4.1769 Acer truncatum HOM05D005324 ORTHO05D001185 1.7e-45 186.8 327 37.3
Atru.chr4.310 Acer truncatum HOM05D005324 ORTHO05D001185 5.1e-42 175.3 296 35.1
Atru.chr9.330 Acer truncatum HOM05D005324 ORTHO05D001185 5.1e-42 175.3 309 35.9
Atru.chr13.2110 Acer truncatum HOM05D005324 ORTHO05D001185 1.4e-39 167.2 103 73.8
Ca_14763_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.3e-39 165.2 257 36.6
Atru.chr5.1824 Acer truncatum HOM05D005324 ORTHO05D001185 1.3e-37 160.6 103 67.0
Atru.chr5.1763 Acer truncatum HOM05D005324 ORTHO05D001185 3.8e-37 159.1 94 76.6
Lj4g0014350 Lotus japonicus HOM05D005324 ORTHO05D001185 8.8e-34 147.9 100 61.0
Lj6g0006708 Lotus japonicus HOM05D005324 ORTHO05D001185 4.4e-33 145.6 100 60.0
Ca_14156_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.3e-32 141.7 103 57.3
Lj6g0011364 Lotus japonicus HOM05D005324 ORTHO05D001185 6.3e-32 141.7 328 31.4
Lj2g0007658 Lotus japonicus HOM05D005324 ORTHO05D001185 2.4e-31 139.8 342 30.7
Ca_24116_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.5e-30 135.6 103 54.4
Ca_22549_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.8e-29 132.5 357 26.9
Ca_23895_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.0e-29 132.1 101 53.5
Lj3g0022640 Lotus japonicus HOM05D005324 ORTHO05D001185 5.0e-29 132.1 99 55.6
Ca_22741_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.1e-28 131.0 101 53.5
Ca_14332_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.2e-28 129.4 312 29.8
arahy.Tifrunner.gnm1.ann1.BZ6XIA Arachis hypogaea HOM05D003326 ORTHO05D000002 4.2e-28 129.0 102 54.9
Ca_22528_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.5e-28 128.6 95 56.8
Ca_05875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.2e-28 128.3 95 55.8
Ca_24087_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.2e-28 128.3 96 55.2
Ca_13672_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.4e-28 127.9 100 55.0
Ca_30430_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.4e-28 127.9 100 55.0
Ca_11659_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.7e-27 126.3 352 26.4
Ca_03092_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.7e-27 125.6 95 54.7
Ca_14762_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.0e-27 124.8 95 53.7
Ca_25326_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.0e-26 124.4 103 50.5
Atru.chr13.2474 Acer truncatum HOM05D005324 ORTHO05D001185 1.5e-25 120.6 113 59.3
Ca_25846_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.7e-25 118.6 90 54.4
Atru.chr11.226 Acer truncatum HOM05D005324 ORTHO05D001185 9.8e-25 117.9 69 73.9
Ca_30934_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.3e-24 115.2 102 48.0
Atru.chr4.2110 Acer truncatum HOM05D005324 ORTHO05D001185 2.4e-23 113.2 101 59.4
Ca_05166_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000002 3.5e-22 109.4 211 34.6
Atru.chr4.959 Acer truncatum HOM05D005324 ORTHO05D001185 4.5e-22 109.0 103 57.3
ECA248G1715 Erigeron canadensis HOM05D005324 ORTHO05D001185 7.7e-22 108.2 121 43.8
Ca_14742_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.3e-21 107.5 334 25.1
Lj4g0024804 Lotus japonicus HOM05D005324 ORTHO05D001185 2.9e-21 106.3 80 55.0
Lj6g0018849 Lotus japonicus HOM05D005324 ORTHO05D001185 3.8e-21 105.9 223 36.8
Atru.chr1.2264 Acer truncatum HOM05D005324 ORTHO05D001185 8.5e-21 104.8 113 51.3
Thecc.01G138000 Theobroma cacao HOM05D005324 ORTHO05D001185 8.5e-21 104.8 104 49.0
CANSAT80G1954 Cannabis sativa HOM05D005324 ORTHO05D001185 3.2e-20 102.8 105 49.5
Ca_23844_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.2e-20 102.4 323 26.0
Ca_30746_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.2e-20 102.4 323 26.0
HanXRQChr09g0262551 Helianthus annuus HOM05D003376 ORTHO05D001185 2.7e-19 99.8 104 44.2
Ca_19239_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.1e-19 98.6 263 28.5
Ca_23845_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.0e-19 98.2 71 56.3
Cc00_g34090 Coffea canephora HOM05D005324 ORTHO05D001185 1.0e-18 97.8 103 48.5
Atru.chr9.596 Acer truncatum HOM05D005324 ORTHO05D001185 2.3e-18 96.7 99 58.6
Atru.chr1.2263 Acer truncatum HOM05D005324 ORTHO05D001185 8.8e-18 94.7 58 70.7
Thhalv10028029m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.6e-17 93.2 121 39.7
Thhalv10028343m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.6e-17 93.2 107 42.1
Ca_02976_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.4e-17 92.4 75 49.3
Thhalv10002934m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 5.7e-17 92.0 107 42.1
Cc00_g17730 Coffea canephora HOM05D003326 ORTHO05D001185 1.3e-16 90.9 105 42.9
Thhalv10000705m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.3e-16 90.9 115 40.0
BcaB05g22490 Brassica carinata HOM05D003376 ORTHO05D001185 1.7e-16 90.5 105 42.9
Thhalv10003417m.g Eutrema salsugineum HOM05D003376 ORTHO05D000048 3.7e-16 89.4 107 41.1
Thhalv10023188m.g Eutrema salsugineum HOM05D003376 ORTHO05D000002 8.3e-16 88.2 328 25.9
Glyma.11G180400 Glycine max HOM05D005324 ORTHO05D001185 8.3e-16 88.2 238 31.1
Thhalv10001272m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.4e-15 87.4 121 38.0
AL88U10020 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.4e-15 86.7 107 39.3
Thhalv10028344m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.4e-15 86.7 336 27.1
PGSC0003DMG400042319 Solanum tuberosum HOM05D019581 ORTHO05D018017 2.4e-15 86.7 103 38.8
AL8G17310 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 3.1e-15 86.3 107 38.3
AL8G17360 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 3.1e-15 86.3 107 38.3
COL.COLO4_29280 Corchorus olitorius HOM05D003376 ORTHO05D001185 3.1e-15 86.3 95 46.3
AL1G57140 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 9.2e-15 84.7 107 38.3
AL8G17320 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 9.2e-15 84.7 107 38.3
Atru.chr13.2462 Acer truncatum HOM05D005324 ORTHO05D001185 3.5e-14 82.8 81 51.9
AL6G42760 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 4.5e-14 82.4 107 37.4
AL6G41750 Arabidopsis lyrata HOM05D003376 ORTHO05D000002 1.0e-13 81.3 107 37.4
Atru.chr11.502 Acer truncatum HOM05D005324 ORTHO05D001185 2.9e-13 79.7 82 51.2
Thhalv10012231m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 5.0e-13 79.0 357 25.5
A01p13220 Brassica napus HOM05D003376 ORTHO05D001185 8.6e-13 78.2 69 52.2
A01p13240 Brassica napus HOM05D003376 ORTHO05D001185 8.6e-13 78.2 69 52.2
CAN.G505.24 Capsicum annuum HOM05D005324 ORTHO05D001185 1.6e-11 73.9 77 49.4
Thhalv10027218m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.1e-11 73.6 92 41.3
BraA09t38519Z Brassica rapa HOM05D003376 ORTHO05D001185 4.7e-11 72.4 60 55.0
C01p15920 Brassica napus HOM05D003376 ORTHO05D001185 4.0e-10 69.3 60 53.3
BraA05t20180Z Brassica rapa HOM05D003376 ORTHO05D001185 4.0e-10 69.3 60 53.3
BolC1t01546H Brassica oleracea HOM05D003376 ORTHO05D001185 2.6e-09 66.6 60 51.7
Ca_04090_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.6e-09 66.6 124 33.9
Ca_05672_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.7e-09 65.5 120 33.3
BraA01t01266Z Brassica rapa HOM05D003376 ORTHO05D001185 7.5e-09 65.1 60 51.7
Ca_14697_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.3e-08 64.3 312 21.2
Ca_19341_v3 Cicer arietinum L. HOM05D005324 ORTHO05D000048 6.4e-08 62.0 269 22.3
Ca_15184_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.2e-07 59.7 120 33.3
Thecc.07G158200 Theobroma cacao HOM05D005324 ORTHO05D001185 7.0e-07 58.5 60 48.3
Glyma.19G076000 Glycine max HOM05D005324 ORTHO05D001185 2.7e-06 56.6 117 30.8
Ca_30800_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.9e-06 55.5 310 22.6


User provided reference genes

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