Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 5.8e-71 271.2 179 100.0
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 1.3e-59 233.4 179 87.7
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 1.9e-58 229.6 177 86.4
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 4.3e-58 228.4 179 86.6
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.3e-57 226.9 179 86.0
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 1.3e-57 226.9 174 80.5
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 1.3e-57 226.9 179 85.5
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 1.1e-56 223.8 180 63.3
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.4e-56 222.6 178 64.0
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 3.1e-56 222.2 174 87.4
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 1.2e-55 220.3 176 85.8
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 1.5e-55 219.9 177 80.8
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 2.0e-55 219.5 177 81.9
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 2.6e-55 219.2 177 80.2
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 4.5e-55 218.4 174 85.6
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 4.5e-55 218.4 177 79.7
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 4.5e-55 218.4 177 81.9
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 5.8e-55 218.0 177 77.4
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 7.6e-55 217.6 174 83.9
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 1.0e-54 217.2 177 81.9
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 1.0e-54 217.2 177 82.5
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 1.7e-54 216.5 179 81.0
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.7e-54 216.5 177 79.1
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 1.7e-54 216.5 178 82.0
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 1.7e-54 216.5 174 81.6
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 3.8e-54 215.3 178 81.5
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 5.0e-54 214.9 174 83.9
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 5.0e-54 214.9 174 83.9
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 8.4e-54 214.2 177 80.2
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.1e-53 213.8 174 83.9
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 1.1e-53 213.8 177 84.7
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 1.9e-53 213.0 176 82.4
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 1.9e-53 213.0 177 80.2
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 4.2e-53 211.8 179 81.6
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 5.5e-53 211.5 179 81.6
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 7.1e-53 211.1 179 79.3
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 9.3e-53 210.7 179 81.0
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 9.3e-53 210.7 179 82.1
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 9.3e-53 210.7 174 82.2
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 1.2e-52 210.3 177 79.1
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 1.2e-52 210.3 180 79.4
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 1.2e-52 210.3 173 84.4
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 1.2e-52 210.3 176 83.5
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 1.6e-52 209.9 177 79.1
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 2.7e-52 209.1 179 80.4
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 3.5e-52 208.8 174 81.0
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 4.6e-52 208.4 179 79.9
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 7.9e-52 207.6 179 82.1
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 7.9e-52 207.6 174 82.8
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 7.9e-52 207.6 174 81.6
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 1.3e-51 206.8 176 79.5
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 1.3e-51 206.8 177 76.3
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.8e-51 206.5 174 80.5
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 1.8e-51 206.5 174 80.5
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 2.3e-51 206.1 176 63.1
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.3e-51 206.1 201 55.2
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 3.0e-51 205.7 252 48.8
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.9e-51 205.3 174 80.5
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 3.9e-51 205.3 176 81.2
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 6.7e-51 204.5 176 81.8
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 6.7e-51 204.5 176 79.5
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 1.9e-50 203.0 174 79.9
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 2.5e-50 202.6 176 61.9
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 2.5e-50 202.6 176 61.9
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 3.3e-50 202.2 179 79.9
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 3.3e-50 202.2 179 76.5
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 4.3e-50 201.8 174 79.9
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 4.3e-50 201.8 174 79.9
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 1.6e-49 199.9 176 79.0
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 1.6e-49 199.9 174 79.3
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 2.2e-49 199.5 175 80.6
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 2.2e-49 199.5 174 80.5
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 2.2e-49 199.5 176 80.1
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 2.2e-49 199.5 174 80.5
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 4.8e-49 198.4 174 80.5
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 1.1e-48 197.2 174 60.3
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 1.1e-48 197.2 174 79.3
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 2.4e-48 196.1 174 79.9
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 9.0e-48 194.1 174 77.0
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 1.3e-46 190.3 174 78.7
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 2.2e-46 189.5 155 85.2
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 5.0e-46 188.3 177 74.6
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 5.0e-46 188.3 173 78.0
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 9.4e-45 184.1 178 55.1
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 2.7e-44 182.6 179 54.7
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 6.1e-44 181.4 174 75.9
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 8.8e-43 177.6 174 73.0
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 3.3e-42 175.6 204 63.7
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 4.3e-42 175.3 191 49.2
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 4.8e-41 171.8 174 53.4
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 4.1e-40 168.7 173 56.1
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 4.1e-40 168.7 174 47.7
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 9.1e-40 167.5 195 68.7
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 7.7e-39 164.5 179 48.6
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 1.3e-38 163.7 145 81.4
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 1.7e-38 163.3 174 52.3
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 6.5e-38 161.4 137 77.4
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 6.5e-38 161.4 151 53.0
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 7.9e-36 154.5 174 46.0
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 7.9e-36 154.5 174 68.4
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 1.8e-35 153.3 137 80.3
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 3.0e-35 152.5 142 82.4
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 5.7e-34 148.3 87 81.6
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.3e-33 147.1 140 80.7
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 6.3e-33 144.8 84 78.6
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 8.2e-33 144.4 128 79.7
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 1.5e-31 140.2 177 63.8
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.7e-30 136.7 216 41.2
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 8.5e-30 134.4 88 70.5
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 2.5e-29 132.9 175 63.4
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 3.2e-29 132.5 88 69.3
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 5.5e-29 131.7 119 59.7
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 1.2e-28 130.6 89 73.0
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.8e-27 126.7 88 68.2
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 2.8e-25 119.4 138 42.8
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 2.8e-25 119.4 122 54.9
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 1.4e-24 117.1 118 55.1
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 4.1e-24 115.5 165 44.2
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 4.4e-18 95.5 118 41.5
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 9.1e-16 87.8 102 50.0
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 2.7e-12 76.3 51 72.5
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 6.3e-09 65.1 36 83.3
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.6e-07 60.5 36 75.0
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 2.3e-06 56.6 36 72.2
SEGI_00674 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 2.3e-06 56.6 51 47.1
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 5.0e-06 55.5 36 66.7


User provided reference genes

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