Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.2008 Acer truncatum HOM05D004665 ORTHO05D006264 5.0e-183 644.4 351 100.0
Atru.chr6.2724 Acer truncatum HOM05D004665 ORTHO05D006264 7.3e-94 348.2 192 94.8
QL02p068558 Quercus lobata HOM05D004665 ORTHO05D006264 6.7e-71 271.9 185 77.3
Cpa.g.sc70.39 Carica papaya HOM05D004665 ORTHO05D006264 4.8e-69 265.8 188 73.9
Duzib264G1200 Durio zibethinus HOM05D004665 ORTHO05D006264 1.8e-68 263.8 190 72.1
CiPaw.04G000200 Carya illinoinensis HOM05D004665 ORTHO05D006264 6.9e-68 261.9 183 73.8
Duzib147G0914 Durio zibethinus HOM05D004665 ORTHO05D006264 1.2e-67 261.2 185 71.4
Prupe.3G315100 Prunus persica HOM05D004665 ORTHO05D006264 1.2e-67 261.2 184 73.4
MD09G1001000 Malus domestica HOM05D004665 ORTHO05D006264 5.9e-67 258.8 184 72.3
RcHm_v2.0_Chr2g0176711 Rosa chinensis HOM05D004665 ORTHO05D006264 7.7e-67 258.5 194 70.6
MD17G1004100 Malus domestica HOM05D004665 ORTHO05D006264 2.2e-66 256.9 194 69.1
Potri.014G139700 Populus trichocarpa HOM05D004665 ORTHO05D006264 2.2e-66 256.9 184 71.2
Thecc.04G051300 Theobroma cacao HOM05D004665 ORTHO05D006264 2.9e-66 256.5 185 71.4
Sabra14G0105400 Salix brachista HOM05D004665 ORTHO05D006264 5.0e-66 255.8 186 70.4
Manes.04G097200 Manihot esculenta HOM05D004665 ORTHO05D006264 1.1e-65 254.6 186 71.5
Phvul.004G068100 Phaseolus vulgaris HOM05D004665 ORTHO05D006264 9.4e-65 251.5 192 67.2
Ciclev10015243m.g Citrus clementina HOM05D004665 ORTHO05D006264 1.6e-64 250.8 194 68.0
GSVIVG01032952001 Vitis vinifera HOM05D004665 ORTHO05D006264 4.6e-64 249.2 189 69.3
VMungo0464G1810 Vigna mungo HOM05D004665 ORTHO05D006264 6.1e-64 248.8 192 66.7
Carub.0005s0467 Capsella rubella HOM05D004665 ORTHO05D006264 7.9e-64 248.4 191 68.6
COL.COLO4_13402 Corchorus olitorius HOM05D004665 ORTHO05D006264 7.9e-64 248.4 183 69.4
Gohir.A11G061900 Gossypium hirsutum HOM05D004665 ORTHO05D006264 7.9e-64 248.4 194 67.0
Glyma.16G149500 Glycine max HOM05D004665 ORTHO05D006264 1.0e-63 248.1 192 66.1
Medtr6g033100 Medicago truncatula HOM05D004665 ORTHO05D006264 1.4e-63 247.7 192 66.1
Glyma.02G068000 Glycine max HOM05D004665 ORTHO05D006264 3.0e-63 246.5 192 66.7
Thhalv10004224m.g Eutrema salsugineum HOM05D004665 ORTHO05D006264 3.9e-63 246.1 195 67.7
AT3G26670 Arabidopsis thaliana HOM05D004665 ORTHO05D006264 5.1e-63 245.7 191 69.1
Lj2g0020206 Lotus japonicus HOM05D004665 ORTHO05D006264 5.1e-63 245.7 192 66.7
FvH4_6g54450 Fragaria vesca HOM05D004665 ORTHO05D006264 6.7e-63 245.4 186 69.4
FAN14G5400 Fragaria x ananassa HOM05D004665 ORTHO05D006264 6.7e-63 245.4 186 69.4
AL5G15510 Arabidopsis lyrata HOM05D004665 ORTHO05D006264 8.8e-63 245.0 191 68.1
TPR.G6109 Trifolium pratense HOM05D004665 ORTHO05D006264 1.1e-62 244.6 192 65.1
Gohir.D11G065800 Gossypium hirsutum HOM05D004665 ORTHO05D006264 1.5e-62 244.2 194 66.5
Gohir.D11G065866 Gossypium hirsutum HOM05D004665 ORTHO05D006264 1.5e-62 244.2 194 66.5
Sp2g15790 Schrenkiella parvula HOM05D004665 ORTHO05D006264 1.5e-62 244.2 190 68.4
Gorai.007G071300 Gossypium raimondii HOM05D004665 ORTHO05D006264 2.0e-62 243.8 194 66.5
CANSAT64G2474 Cannabis sativa HOM05D004665 ORTHO05D006264 2.5e-62 243.4 192 67.2
FAN09G0696 Fragaria x ananassa HOM05D004665 ORTHO05D006264 2.5e-62 243.4 186 68.8
PGR142G3265 Punica granatum HOM05D004665 ORTHO05D006264 3.3e-62 243.0 193 65.8
Cfa007139 Carpinus fangiana HOM05D004665 ORTHO05D006264 4.3e-62 242.7 185 70.8
CARHR147680 Cardamine hirsuta HOM05D004665 ORTHO05D006264 2.2e-61 240.4 191 68.1
Eucgr.I01571 Eucalyptus grandis HOM05D004665 ORTHO05D006264 2.8e-61 240.0 186 66.1
THA.LOC104824001 Tarenaya hassleriana HOM05D004665 ORTHO05D006264 2.8e-61 240.0 185 69.2
A06p41830 Brassica napus HOM05D004665 ORTHO05D006264 3.7e-61 239.6 194 66.0
BraA06t27102Z Brassica rapa HOM05D004665 ORTHO05D006264 3.7e-61 239.6 194 66.0
BcaB07g30221 Brassica carinata HOM05D004665 ORTHO05D006264 8.2e-61 238.4 195 66.7
Psat1g014640 Pisum sativum HOM05D004665 ORTHO05D006264 1.1e-60 238.0 188 64.9
C07p35690 Brassica napus HOM05D004665 ORTHO05D006264 1.4e-60 237.7 190 66.8
BolC7t44090H Brassica oleracea HOM05D004665 ORTHO05D006264 1.4e-60 237.7 190 66.8
BcaB07g30223 Brassica carinata HOM05D004665 ORTHO05D006264 3.1e-60 236.5 191 67.5
BcaC06g31051 Brassica carinata HOM05D004665 ORTHO05D006264 3.1e-60 236.5 194 65.5
Ca_04509_v3 Cicer arietinum L. HOM05D004665 ORTHO05D006264 4.1e-60 236.1 184 67.4
Manes.11G073500 Manihot esculenta HOM05D004665 ORTHO05D006264 4.1e-60 236.1 205 62.9
Aa31LG2G5890 Aethionema arabicum HOM05D004665 ORTHO05D006264 5.3e-60 235.7 196 64.8
Haze_14984 Corylus avellana HOM05D004665 ORTHO05D006264 6.9e-60 235.3 189 69.3
CsaV3_3G020050 Cucumis sativus L. HOM05D004665 ORTHO05D006264 9.1e-60 235.0 184 67.4
Lalb_Chr21g0316981 Lupinus albus HOM05D004665 ORTHO05D006264 1.5e-59 234.2 185 65.4
MELO3C014760.2 Cucumis melo HOM05D004665 ORTHO05D006264 2.6e-59 233.4 184 66.3
Hma1.2p1_0421F.1_g149890 Hydrangea macrophylla HOM05D004665 ORTHO05D006264 7.7e-59 231.9 191 64.9
A02p34660 Brassica napus HOM05D004665 ORTHO05D006264 1.0e-58 231.5 195 65.6
BraA02t08474Z Brassica rapa HOM05D004665 ORTHO05D006264 1.0e-58 231.5 195 65.6
ClCG05G012480 Citrullus lanatus HOM05D004665 ORTHO05D006264 5.0e-58 229.2 179 66.5
Rhsim08G0037600 Rhododendron simsii HOM05D004665 ORTHO05D006264 1.4e-57 227.6 192 64.1
Sed0011932 Sechium edule HOM05D004665 ORTHO05D006264 1.4e-57 227.6 179 67.0
TWI60G0175 Tripterygium wilfordii HOM05D004665 ORTHO05D006264 1.4e-57 227.6 194 65.5
C02p53220 Brassica napus HOM05D004665 ORTHO05D006264 1.9e-57 227.3 195 64.1
BcaC03g17377 Brassica carinata HOM05D004665 ORTHO05D006264 3.2e-57 226.5 195 64.6
BolC2t11394H Brassica oleracea HOM05D004665 ORTHO05D006264 3.2e-57 226.5 195 64.6
Lalb_Chr02g0156931 Lupinus albus HOM05D004665 ORTHO05D006264 9.4e-57 224.9 195 61.5
THA.LOC104805296 Tarenaya hassleriana HOM05D004665 ORTHO05D006264 9.4e-57 224.9 180 67.2
TAR622G0174 Trochodendron aralioides HOM05D004665 ORTHO05D006264 1.2e-56 224.6 192 63.5
Sc16g0004200 Simmondsia chinensis HOM05D004665 ORTHO05D006264 3.6e-56 223.0 184 63.0
Nn4g22078 Nelumbo nucifera HOM05D004665 ORTHO05D006264 1.8e-55 220.7 180 66.7
CSS0012528 Camellia sinensis var. sinensis HOM05D004665 ORTHO05D006264 1.1e-54 218.0 185 63.8
CSS0013787 Camellia sinensis var. sinensis HOM05D004665 ORTHO05D006264 1.1e-54 218.0 185 63.8
Nitab4.5_0002901g0090 Nicotiana tabacum HOM05D004665 ORTHO05D006264 1.5e-54 217.6 184 60.9
Nitab4.5_0000519g0340 Nicotiana tabacum HOM05D004665 ORTHO05D006264 3.3e-54 216.5 184 60.3
arahy.Tifrunner.gnm1.ann1.1F18R3 Arachis hypogaea HOM05D004665 ORTHO05D006264 7.4e-54 215.3 178 61.8
Cc07_g01420 Coffea canephora HOM05D004665 ORTHO05D006264 1.3e-53 214.5 195 59.0
vmacro18403 Vaccinium macrocarpon HOM05D004665 ORTHO05D006264 1.7e-53 214.2 192 61.5
CAN.G473.165 Capsicum annuum HOM05D004665 ORTHO05D006264 6.3e-53 212.2 184 58.7
Hund04137 Selenicereus undatus HOM05D004665 ORTHO05D006264 6.3e-53 212.2 191 57.1
Ah.02g128750 Amaranthus hybridus HOM05D000154 ORTHO05D000092 1.4e-52 211.1 198 56.6
Aqoxy5G03000 Aquilegia oxysepala HOM05D004665 ORTHO05D006264 1.8e-52 210.7 192 58.3
Oeu050153.1 Olea europaea HOM05D004665 ORTHO05D006264 4.1e-52 209.5 179 59.8
Peaxi162Scf00420g00913 Petunia axillaris HOM05D004665 ORTHO05D006264 5.3e-52 209.1 186 60.8
AUR62032536 Chenopodium quinoa HOM05D004665 ORTHO05D006264 1.3e-50 204.5 190 56.8
arahy.Tifrunner.gnm1.ann1.3E1BT5 Arachis hypogaea HOM05D004665 ORTHO05D006264 1.7e-50 204.1 201 55.2
MSTRG.3035 Avicennia marina HOM05D004665 ORTHO05D006264 5.0e-50 202.6 187 59.4
AUR62017468 Chenopodium quinoa HOM05D004665 ORTHO05D006264 1.1e-49 201.4 190 56.3
Aqoxy271s005 Aquilegia oxysepala HOM05D004665 ORTHO05D006264 1.9e-49 200.7 174 60.9
MBI11_g30566_MAGBIO Magnolia biondii HOM05D004665 ORTHO05D006264 2.5e-49 200.3 180 57.8
CDE06G1855 Ceratophyllum demersum HOM05D004665 ORTHO05D006264 5.5e-49 199.1 188 58.0
Dinv33260 Davidia involucrata HOM05D004665 ORTHO05D006264 7.2e-49 198.7 157 68.8
PSO017G6847 Papaver somniferum HOM05D004665 ORTHO05D006264 7.2e-49 198.7 191 54.5
PSO478G3167 Papaver somniferum HOM05D004665 ORTHO05D006264 7.2e-49 198.7 188 55.9
Migut.F00002 Erythranthe guttata HOM05D004665 ORTHO05D006264 1.2e-48 198.0 184 57.1
EL10Ac6g13903 Beta vulgaris HOM05D004665 ORTHO05D006264 7.4e-46 188.7 190 54.2
SGA_v2.0_scaffold44G16957 Striga asiatica HOM05D004665 ORTHO05D006264 1.3e-45 188.0 213 51.6
ECA238G3366 Erigeron canadensis HOM05D004665 ORTHO05D006264 1.7e-45 187.6 191 53.9
FAN02G3991 Fragaria x ananassa HOM05D004665 ORTHO05D006264 1.4e-44 184.5 152 65.1
HanXRQChr07g0197991 Helianthus annuus HOM05D004665 ORTHO05D006264 1.6e-43 181.0 191 53.4
Lsat_1_v5_gn_2_95241 Lactuca sativa HOM05D005263 ORTHO05D006891 3.2e-41 173.3 193 52.8
ATR0582G225 Amborella trichopoda HOM05D004665 ORTHO05D006264 9.4e-41 171.8 184 52.7
Os02g0518100 Oryza sativa ssp. japonica HOM05D004665 ORTHO05D006264 2.7e-40 170.2 175 53.1
HPP92_009749 Vanilla planifolia HOM05D004665 ORTHO05D006264 6.8e-39 165.6 197 48.2
HPP92_009766 Vanilla planifolia HOM05D004665 ORTHO05D006264 6.8e-39 165.6 197 48.2
Zm00001eb242230 Zea mays HOM05D004665 ORTHO05D006264 3.7e-37 159.8 200 48.5
HPP92_021581 Vanilla planifolia HOM05D004665 ORTHO05D006264 5.5e-33 146.0 179 46.4
Atru.chr7.902 Acer truncatum HOM05D000003 ORTHO05D002259 7.2e-33 145.6 165 55.8
Lj7A619T48 Lonicera japonica HOM05D004665 ORTHO05D006264 1.5e-30 137.9 283 37.1
PGSC0003DMG401020232 Solanum tuberosum HOM05D004665 ORTHO05D006264 2.0e-30 137.5 141 50.4
SalBow4G0739 Salvia bowleyana HOM05D004665 ORTHO05D006264 6.3e-29 132.5 140 52.1
Atru.chr7.511 Acer truncatum HOM05D000003 ORTHO05D052560 3.1e-28 130.2 84 79.8
Mapoly0166s0011 Marchantia polymorpha HOM05D004665 ORTHO05D006264 4.5e-27 126.3 149 46.3
HanXRQChr14g0451551 Helianthus annuus HOM05D004665 ORTHO05D006264 1.1e-25 121.7 121 55.4
Zm00001eb393410 Zea mays HOM05D004665 ORTHO05D006264 1.6e-24 117.9 148 44.6
Actinidia19542 Actinidia chinensis HOM05D004665 ORTHO05D006264 2.1e-24 117.5 105 61.0
Pp3c8_3640 Physcomitrium patens HOM05D004665 ORTHO05D006264 6.1e-24 115.9 158 42.4
FAN05G2324 Fragaria x ananassa HOM05D004665 ORTHO05D006264 1.5e-22 111.3 66 83.3
Peaxi162Scf00058g00033 Petunia axillaris HOM05D004665 ORTHO05D006264 1.5e-22 111.3 102 59.8
Nn3g16211 Nelumbo nucifera HOM05D004665 ORTHO05D006264 2.0e-22 110.9 124 49.2
Zm00001eb180680 Zea mays HOM05D004665 ORTHO05D006264 2.6e-22 110.5 153 48.4
Zm00001eb060310 Zea mays HOM05D004665 ORTHO05D006264 3.4e-22 110.2 74 75.7
SMO266G0026 Selaginella moellendorffii HOM05D004665 ORTHO05D006264 7.5e-22 109.0 178 39.9
CAN.G1393.18 Capsicum annuum HOM05D004665 ORTHO05D006264 8.3e-21 105.5 97 59.8
Solyc01g086730.4 Solanum lycopersicum HOM05D004665 ORTHO05D006264 1.8e-20 104.4 101 57.4
Sopen01g033730 Solanum pennellii HOM05D004665 ORTHO05D006264 4.1e-20 103.2 101 57.4
Pp3c3_36320 Physcomitrium patens HOM05D004665 ORTHO05D006264 5.4e-20 102.8 155 41.9
PGSC0003DMG400025244 Solanum tuberosum HOM05D004665 ORTHO05D006264 1.6e-19 101.3 76 68.4
Nitab4.5_0003951g0020 Nicotiana tabacum HOM05D004665 ORTHO05D006264 5.9e-19 99.4 73 68.5
SEGI_21160 Sequoiadendron giganteum HOM05D004665 ORTHO05D006264 1.0e-18 98.6 66 74.2
Actinidia37709 Actinidia chinensis HOM05D004665 ORTHO05D006264 3.9e-18 96.7 71 71.8
AagrBONN_evm.TU.Sc2ySwM_117.2741 Anthoceros agrestis HOM05D004665 ORTHO05D006264 1.2e-14 85.1 68 61.8
CBR_g40440 Chara braunii HOM05D004665 ORTHO05D006264 8.3e-13 79.0 61 59.0
FAN02G3871 Fragaria x ananassa HOM05D004665 ORTHO05D006264 6.0e-11 72.8 54 68.5
Cfa007634 Carpinus fangiana HOM05D004665 ORTHO05D006264 1.5e-09 68.2 40 82.5
Haze_14979 Corylus avellana HOM05D004665 ORTHO05D006264 2.5e-09 67.4 35 88.6
Cre12.g523100 Chlamydomonas reinhardtii HOM05D004665 ORTHO05D006264 1.2e-06 58.5 143 28.0
Cre08.g358400 Chlamydomonas reinhardtii HOM05D004665 ORTHO05D006264 9.8e-06 55.5 59 47.5


User provided reference genes

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