Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 5.6e-80 300.8 147 100.0
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 7.4e-64 247.3 137 81.8
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 1.6e-63 246.1 147 78.2
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 1.8e-62 242.7 142 78.9
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 9.0e-62 240.4 142 78.9
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 2.6e-61 238.8 145 75.2
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 2.6e-61 238.8 136 80.1
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 4.5e-61 238.0 141 76.6
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 5.9e-61 237.7 145 76.6
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 5.9e-61 237.7 138 76.8
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 1.3e-60 236.5 141 75.9
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.3e-60 236.5 145 73.8
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 1.3e-60 236.5 140 77.1
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 1.7e-60 236.1 143 74.8
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 2.2e-60 235.7 145 74.5
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 2.9e-60 235.3 143 74.1
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 5.0e-60 234.6 145 73.8
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 5.0e-60 234.6 138 76.1
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 5.0e-60 234.6 136 79.4
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 5.0e-60 234.6 136 79.4
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 6.5e-60 234.2 145 75.9
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 6.5e-60 234.2 145 75.9
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 1.1e-59 233.4 145 74.5
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 1.1e-59 233.4 138 80.4
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.4e-59 233.0 136 78.7
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 1.4e-59 233.0 141 75.9
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 1.9e-59 232.6 145 72.4
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 1.9e-59 232.6 150 74.0
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.9e-59 232.6 133 77.4
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.9e-59 232.6 133 77.4
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 2.5e-59 232.3 141 75.2
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 7.2e-59 230.7 145 73.8
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 9.4e-59 230.3 137 78.1
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.2e-58 229.9 133 75.9
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 2.7e-58 228.8 145 71.0
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 2.7e-58 228.8 140 75.0
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 2.7e-58 228.8 134 77.6
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 4.6e-58 228.0 142 72.5
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 4.6e-58 228.0 142 72.5
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 4.6e-58 228.0 136 80.1
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 2.3e-57 225.7 139 71.9
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 3.0e-57 225.3 140 71.4
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 5.1e-57 224.6 139 71.9
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 6.7e-57 224.2 142 73.2
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 6.7e-57 224.2 134 77.6
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 8.8e-57 223.8 139 73.4
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 8.8e-57 223.8 161 68.3
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 8.8e-57 223.8 140 72.1
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 8.8e-57 223.8 141 72.3
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 1.1e-56 223.4 139 73.4
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 1.5e-56 223.0 140 72.9
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 1.9e-56 222.6 147 69.4
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 1.9e-56 222.6 136 74.3
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 2.5e-56 222.2 139 72.7
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 2.5e-56 222.2 139 72.7
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 3.3e-56 221.9 139 71.9
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 3.3e-56 221.9 140 69.3
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 3.3e-56 221.9 140 69.3
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 3.3e-56 221.9 136 74.3
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 4.3e-56 221.5 140 72.1
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 7.4e-56 220.7 173 63.0
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 7.4e-56 220.7 141 72.3
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 9.7e-56 220.3 140 70.0
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.2e-55 219.2 140 68.6
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 3.7e-55 218.4 139 70.5
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 3.7e-55 218.4 136 72.1
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 1.1e-54 216.9 136 72.1
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 1.4e-54 216.5 136 72.1
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 2.4e-54 215.7 139 75.5
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 3.1e-54 215.3 143 67.8
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 4.1e-54 214.9 139 71.9
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 5.3e-54 214.5 136 74.3
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 9.1e-54 213.8 145 71.7
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 1.2e-53 213.4 141 70.9
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 1.2e-53 213.4 145 69.7
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 1.5e-53 213.0 136 70.6
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 3.4e-53 211.8 138 70.3
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 3.4e-53 211.8 122 78.7
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 7.7e-53 210.7 158 63.9
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 7.7e-53 210.7 138 69.6
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 1.0e-52 210.3 141 70.9
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 1.3e-52 209.9 141 68.8
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 1.7e-52 209.5 141 70.9
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.2e-52 209.1 134 70.9
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 6.5e-52 207.6 139 69.1
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 6.5e-52 207.6 140 67.1
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 1.4e-51 206.5 142 66.9
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 1.9e-51 206.1 120 79.2
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 1.9e-51 206.1 140 68.6
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.9e-51 206.1 134 70.1
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 2.5e-51 205.7 134 70.1
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 3.2e-51 205.3 140 66.4
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 4.2e-51 204.9 133 67.7
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 7.2e-51 204.1 140 68.6
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 9.4e-51 203.8 139 69.1
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 2.7e-50 202.2 133 67.7
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 2.7e-50 202.2 142 69.7
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 2.7e-50 202.2 142 69.7
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 3.6e-50 201.8 136 69.1
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 3.0e-49 198.7 136 67.6
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 3.9e-49 198.4 117 76.1
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 1.1e-48 196.8 139 62.6
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 1.5e-48 196.4 140 67.1
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.5e-48 196.4 141 65.2
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 2.6e-48 195.7 136 66.9
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 3.3e-48 195.3 136 66.2
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 4.4e-48 194.9 120 74.2
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 7.4e-48 194.1 134 67.2
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 1.7e-47 193.0 141 63.1
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 1.8e-46 189.5 136 62.5
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 2.4e-46 189.1 203 49.8
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 2.4e-46 189.1 136 64.0
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 5.3e-46 188.0 117 70.1
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 7.0e-46 187.6 139 66.2
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 3.4e-45 185.3 141 61.7
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 4.5e-45 184.9 120 70.0
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 7.7e-45 184.1 141 60.3
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 1.3e-44 183.3 120 69.2
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 1.7e-44 183.0 142 60.6
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 3.8e-44 181.8 120 69.2
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 8.5e-44 180.6 134 61.9
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 1.1e-43 180.3 140 55.7
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 1.4e-43 179.9 137 59.1
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 2.5e-43 179.1 141 57.4
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 4.2e-43 178.3 111 75.7
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 2.1e-42 176.0 136 58.1
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 3.6e-42 175.3 105 75.2
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 1.0e-41 173.7 115 70.4
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 5.2e-41 171.4 135 60.7
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 9.7e-40 167.2 142 57.0
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 6.3e-39 164.5 118 66.9
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.6e-37 159.1 95 69.5
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 8.5e-36 154.1 131 55.0
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 1.1e-35 153.7 140 56.4
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.2e-33 144.8 133 51.1
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.2e-33 144.8 133 51.1
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.7e-29 132.5 133 48.9
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 1.5e-27 126.7 81 70.4
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 3.6e-26 122.1 131 49.6
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 1.0e-25 120.6 99 56.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 1.4e-25 120.2 99 55.6
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 2.3e-25 119.4 136 44.9
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 5.7e-24 114.8 87 58.6
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 2.8e-23 112.5 142 42.3
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.1e-22 110.5 137 41.6
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.4e-22 109.4 132 43.9
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 3.1e-22 109.0 137 38.7
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.0e-21 106.3 127 42.5
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 7.7e-21 104.4 143 37.8
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.5e-19 99.4 134 38.8
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 2.5e-19 99.4 137 38.0
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 1.7e-15 86.7 61 70.5
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.7e-15 86.7 55 69.1
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 3.7e-15 85.5 59 64.4
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 3.7e-15 85.5 65 60.0
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 8.3e-15 84.3 61 68.9
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 8.3e-15 84.3 61 68.9
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 8.3e-15 84.3 61 68.9
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 1.6e-13 80.1 112 42.0
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.0e-12 77.4 89 44.9
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 1.7e-12 76.6 123 33.3
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 2.9e-12 75.9 100 42.0
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 2.1e-10 69.7 49 63.3
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 3.4e-08 62.4 112 35.7
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 7.0e-06 54.7 32 78.1


User provided reference genes

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