Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 5.9e-281 970.3 528 100.0
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 2.0e-252 875.5 507 90.1
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 1.3e-251 872.8 503 89.3
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 2.5e-247 858.6 501 88.0
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 3.3e-247 858.2 505 87.7
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 3.6e-246 854.7 509 86.6
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 3.6e-246 854.7 505 86.7
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 8.1e-246 853.6 509 86.4
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 8.1e-246 853.6 500 86.8
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 1.1e-245 853.2 501 87.4
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 9.3e-242 840.1 506 84.8
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 7.8e-241 837.0 501 85.0
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.7e-240 835.9 508 85.2
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 2.3e-240 835.5 504 84.5
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 1.5e-239 832.8 501 85.0
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 7.3e-239 830.5 501 85.6
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 1.3e-238 829.7 504 84.3
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 1.3e-238 829.7 502 84.1
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 3.6e-238 828.2 501 83.8
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 4.8e-238 827.8 509 84.5
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 6.2e-238 827.4 505 83.4
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 8.1e-238 827.0 502 84.1
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 1.1e-237 826.6 504 83.3
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 1.8e-237 825.9 506 83.0
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 4.0e-237 824.7 502 83.3
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 6.9e-237 823.9 498 83.5
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 2.0e-236 822.4 502 83.7
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 5.8e-236 820.8 502 83.5
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 7.6e-236 820.5 502 83.9
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 7.6e-236 820.5 502 83.5
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 9.9e-236 820.1 502 82.9
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 1.3e-235 819.7 511 82.8
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 3.8e-235 818.1 502 82.9
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 8.4e-235 817.0 500 83.8
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 1.4e-234 816.2 501 82.2
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 2.4e-234 815.5 496 83.3
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 7.1e-234 813.9 515 82.1
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 1.6e-233 812.8 501 82.6
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 2.7e-233 812.0 504 82.7
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 3.7e-230 801.6 501 81.8
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 2.4e-229 798.9 501 81.6
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 1.5e-228 796.2 509 80.4
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 7.6e-228 793.9 521 79.1
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 7.6e-228 793.9 504 80.6
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 2.9e-227 792.0 504 79.6
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 8.4e-227 790.4 504 79.4
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 2.4e-226 788.9 502 80.3
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 3.2e-226 788.5 504 79.2
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.2e-225 786.6 502 80.3
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 6.0e-225 784.3 501 79.4
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 1.0e-224 783.5 501 79.8
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 3.0e-224 781.9 508 79.5
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 3.9e-224 781.6 499 80.0
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 1.9e-223 779.2 501 79.2
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 3.3e-223 778.5 505 80.6
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 3.3e-223 778.5 513 78.2
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 1.6e-222 776.2 505 80.6
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 6.2e-222 774.2 515 78.3
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 1.5e-220 769.6 502 78.3
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 2.0e-220 769.2 501 77.8
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 3.4e-220 768.5 499 78.0
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 1.0e-219 766.9 509 80.2
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 8.4e-219 763.8 528 75.4
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 2.5e-218 762.3 501 77.0
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 9.3e-218 760.4 499 78.6
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 1.6e-217 759.6 517 75.4
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 2.1e-217 759.2 511 75.9
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.3e-216 756.5 499 78.0
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 3.9e-216 755.0 597 68.5
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 3.9e-216 755.0 502 78.7
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 5.1e-216 754.6 501 78.2
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.1e-215 753.4 499 77.8
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 1.1e-215 753.4 503 77.9
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 5.7e-215 751.1 501 76.4
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 2.2e-214 749.2 505 77.0
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 4.1e-213 745.0 501 79.0
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 4.1e-213 745.0 501 77.8
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 1.2e-212 743.4 502 77.5
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 3.8e-211 738.4 501 75.4
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 6.7e-208 727.6 509 74.7
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 8.8e-208 727.2 502 76.1
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 8.8e-208 727.2 604 65.7
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 9.7e-207 723.8 446 82.3
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 1.1e-197 693.7 470 76.8
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 9.4e-194 680.6 595 63.5
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 8.0e-193 677.6 501 69.1
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 2.3e-192 676.0 494 69.8
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 6.7e-192 674.5 501 72.1
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 6.7e-192 674.5 499 72.1
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 3.3e-191 672.2 506 68.2
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 2.8e-190 669.1 424 81.4
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 2.4e-189 666.0 557 64.1
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 2.0e-183 646.4 436 78.2
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 5.3e-181 638.3 496 65.7
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 5.3e-181 638.3 496 65.7
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 3.1e-173 612.5 445 71.0
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 2.8e-169 599.4 432 73.6
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 2.9e-163 579.3 368 78.5
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 1.8e-160 570.1 518 56.9
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 3.3e-154 549.3 486 58.4
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 1.6e-153 547.0 360 77.5
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 8.9e-152 541.2 338 83.1
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 7.5e-151 538.1 365 76.2
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 1.1e-141 507.7 327 78.6
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 6.6e-131 471.9 322 77.0
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 2.6e-119 433.3 249 86.7
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 3.4e-119 433.0 303 74.3
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 3.0e-107 393.3 506 43.9
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 3.0e-107 393.3 429 56.6
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 8.4e-102 375.2 496 43.8
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 9.3e-101 371.7 240 79.6
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 1.3e-86 324.7 478 40.4
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 2.7e-76 290.4 310 56.1
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 3.0e-75 287.0 173 82.7
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 5.0e-54 216.5 199 60.8
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 6.8e-51 206.1 496 33.7
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 1.3e-49 201.8 118 87.3
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 5.4e-48 196.4 497 32.8
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 2.7e-47 194.1 478 34.9
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 1.0e-38 165.6 290 41.7
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 3.9e-38 163.7 445 34.2
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 1.1e-37 162.2 115 71.3
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 4.7e-36 156.8 467 33.4
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 3.4e-34 150.6 452 32.7
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 2.5e-29 134.4 86 74.4
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 6.2e-28 129.8 331 35.6
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 2.0e-26 124.8 277 37.9
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 2.6e-26 124.4 277 37.5
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 6.4e-25 119.8 295 34.6
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 1.9e-24 118.2 220 41.4
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 7.1e-24 116.3 208 41.3
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 3.5e-23 114.0 365 31.8
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 8.6e-22 109.4 325 29.8
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 5.6e-21 106.7 142 45.8
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 4.7e-20 103.6 208 40.4
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 8.1e-20 102.8 63 77.8
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 8.1e-20 102.8 359 30.6
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 1.1e-19 102.4 208 39.4
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 1.8e-19 101.7 142 44.4
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 2.6e-18 97.8 339 32.4
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 2.6e-18 97.8 76 63.2
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 3.4e-18 97.4 307 29.6
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 7.6e-18 96.3 339 32.2
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 1.4e-16 92.0 244 30.3
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 5.1e-14 83.6 298 30.9
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 7.3e-13 79.7 288 31.6
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 5.8e-10 70.1 161 36.6


User provided reference genes

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