Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 2.4e-80 302.0 137 100.0
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.2e-70 268.9 133 87.2
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 2.7e-68 261.9 136 82.4
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 6.0e-68 260.8 135 83.0
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 1.3e-67 259.6 136 80.9
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 1.8e-67 259.2 135 82.2
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 3.9e-67 258.1 133 82.7
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 8.7e-67 256.9 133 82.7
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 2.5e-66 255.4 133 80.5
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 4.3e-66 254.6 133 77.4
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 4.3e-66 254.6 133 82.0
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 7.4e-66 253.8 133 80.5
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 7.4e-66 253.8 133 79.7
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 1.6e-65 252.7 133 80.5
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.6e-65 252.7 133 82.0
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.1e-65 252.3 133 82.0
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 3.7e-65 251.5 135 78.5
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 3.7e-65 251.5 133 80.5
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 4.8e-65 251.1 136 76.5
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 4.8e-65 251.1 133 78.2
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 6.2e-65 250.8 133 81.2
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 8.1e-65 250.4 133 80.5
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 8.1e-65 250.4 133 79.7
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 8.1e-65 250.4 133 77.4
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 1.1e-64 250.0 133 82.0
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.4e-64 249.6 133 81.2
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 1.4e-64 249.6 133 77.4
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 2.4e-64 248.8 128 81.2
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.4e-64 248.8 133 81.2
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.2e-63 246.5 131 80.2
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 1.5e-63 246.1 133 78.2
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 2.0e-63 245.7 133 78.2
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 3.4e-63 245.0 128 82.0
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 9.9e-63 243.4 133 78.2
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.7e-62 242.7 133 75.2
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 4.9e-62 241.1 133 76.7
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 6.4e-62 240.7 133 75.2
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 6.4e-62 240.7 129 76.7
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 8.4e-62 240.4 133 74.4
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 1.4e-61 239.6 133 73.7
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 1.4e-61 239.6 133 75.2
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 1.9e-61 239.2 130 75.4
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 2.5e-61 238.8 133 74.4
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 2.5e-61 238.8 133 75.2
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 2.5e-61 238.8 133 75.2
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.5e-61 238.8 130 73.8
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 4.2e-61 238.0 133 74.4
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 4.2e-61 238.0 133 72.9
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 5.5e-61 237.7 133 75.2
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.1e-61 237.3 130 73.1
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 9.3e-61 236.9 133 74.4
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 9.3e-61 236.9 133 75.2
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 1.2e-60 236.5 132 74.2
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.6e-60 236.1 133 74.4
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.6e-60 236.1 130 73.1
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 1.6e-60 236.1 123 81.3
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 2.1e-60 235.7 135 73.3
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 2.1e-60 235.7 133 74.4
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 2.7e-60 235.3 133 73.7
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 2.7e-60 235.3 133 73.7
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 3.5e-60 235.0 133 72.2
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 4.6e-60 234.6 133 72.2
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 4.6e-60 234.6 133 73.7
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 6.0e-60 234.2 128 74.2
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 6.0e-60 234.2 133 73.7
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 6.0e-60 234.2 133 74.4
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 7.9e-60 233.8 133 71.4
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 7.9e-60 233.8 133 71.4
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 1.0e-59 233.4 133 74.4
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 1.0e-59 233.4 133 72.2
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 1.0e-59 233.4 133 71.4
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.0e-59 233.4 119 86.6
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 1.0e-59 233.4 126 77.8
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.3e-59 233.0 133 73.7
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.3e-59 232.3 133 72.9
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.3e-59 232.3 130 71.5
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 2.3e-59 232.3 128 75.0
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 3.0e-59 231.9 133 74.4
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 3.9e-59 231.5 131 75.6
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 3.9e-59 231.5 136 71.3
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 5.1e-59 231.1 133 72.2
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 8.7e-59 230.3 133 72.9
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 8.7e-59 230.3 121 77.7
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 1.5e-58 229.6 133 71.4
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 1.9e-58 229.2 133 72.9
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 2.5e-58 228.8 133 70.7
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 2.5e-58 228.8 133 70.7
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 3.3e-58 228.4 134 74.6
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 3.3e-58 228.4 129 73.6
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 4.3e-58 228.0 133 70.7
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 5.6e-58 227.6 133 70.7
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 5.6e-58 227.6 133 69.9
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 5.6e-58 227.6 133 70.7
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 9.6e-58 226.9 133 72.2
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 1.3e-57 226.5 172 62.2
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 1.6e-57 226.1 133 68.4
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 2.1e-57 225.7 133 69.9
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 2.1e-57 225.7 133 71.4
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 2.8e-57 225.3 127 74.0
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 3.7e-57 224.9 133 69.2
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 6.2e-57 224.2 133 69.2
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 8.2e-57 223.8 131 71.8
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 3.1e-56 221.9 121 76.0
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 4.0e-56 221.5 133 67.7
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 1.2e-55 219.9 133 69.2
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 2.0e-55 219.2 132 68.2
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 2.6e-55 218.8 133 69.9
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 3.4e-55 218.4 132 68.9
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 5.8e-55 217.6 133 68.4
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 1.0e-54 216.9 128 72.7
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 6.5e-54 214.2 121 73.6
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.4e-53 213.0 129 66.7
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 1.9e-53 212.6 128 69.5
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 2.5e-53 212.2 126 71.4
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 3.2e-53 211.8 129 65.9
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 7.1e-53 210.7 130 66.2
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 1.6e-52 209.5 129 66.7
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 2.7e-52 208.8 125 66.4
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 1.0e-51 206.8 125 67.2
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 1.0e-51 206.8 133 67.7
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 1.9e-50 202.6 128 65.6
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 5.7e-50 201.1 121 66.1
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 5.7e-50 201.1 128 66.4
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 9.7e-50 200.3 130 62.3
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 1.6e-49 199.5 121 68.6
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 8.2e-49 197.2 116 68.1
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 2.4e-48 195.7 131 61.8
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.3e-48 194.5 130 63.8
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 5.5e-45 184.5 132 59.1
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 2.7e-44 182.2 103 71.8
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 3.6e-44 181.8 128 57.0
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 1.0e-43 180.3 109 66.1
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 6.7e-43 177.6 95 80.0
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 7.4e-42 174.1 132 57.6
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 9.7e-42 173.7 125 64.0
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 6.3e-41 171.0 125 62.4
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.4e-40 169.1 129 56.6
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.2e-39 166.8 132 57.6
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 1.5e-39 166.4 95 78.9
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 3.4e-39 165.2 134 59.0
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.2e-36 156.8 85 77.6
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 2.0e-34 149.4 74 89.2
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 5.7e-34 147.9 93 66.7
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 1.7e-33 146.4 141 44.0
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.2e-28 130.2 74 79.7
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.6e-26 122.5 112 50.9
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.3e-25 120.2 68 75.0
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.0e-24 114.4 63 76.2
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.0e-22 108.2 78 59.0
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 5.2e-19 98.2 80 55.0


User provided reference genes

Program Settings