Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 9.4e-79 297.0 170 100.0
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 1.8e-58 229.6 166 78.3
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 2.4e-58 229.2 164 78.7
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 1.1e-55 220.3 165 74.5
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 4.3e-55 218.4 165 73.3
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 2.8e-54 215.7 160 74.4
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 6.1e-54 214.5 168 70.2
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 6.1e-54 214.5 166 72.9
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 6.1e-54 214.5 165 73.3
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 1.0e-53 213.8 165 72.7
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 1.4e-53 213.4 165 73.9
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 2.3e-53 212.6 165 73.3
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 3.0e-53 212.2 156 75.0
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 4.0e-53 211.8 160 75.0
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 8.9e-53 210.7 162 75.9
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 1.5e-52 209.9 158 75.3
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 2.0e-52 209.5 161 72.7
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 2.6e-52 209.1 165 72.1
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 2.6e-52 209.1 160 75.0
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 4.4e-52 208.4 165 69.7
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 5.7e-52 208.0 164 72.0
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 2.2e-51 206.1 165 69.1
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 2.2e-51 206.1 162 72.8
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.9e-51 205.7 165 70.9
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 2.9e-51 205.7 162 71.6
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 4.9e-51 204.9 167 68.9
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 6.4e-51 204.5 168 72.6
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.1e-50 203.8 165 70.3
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 1.1e-50 203.8 161 73.3
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 1.8e-50 203.0 164 69.5
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 5.4e-50 201.4 164 69.5
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.0e-49 199.5 166 69.3
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.5e-49 198.7 158 70.9
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 3.5e-49 198.7 159 69.8
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 3.5e-49 198.7 160 71.9
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 5.9e-49 198.0 165 69.1
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 1.0e-48 197.2 156 71.8
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.3e-48 196.1 165 66.7
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 3.0e-48 195.7 158 70.3
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 5.0e-48 194.9 157 68.8
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 6.6e-48 194.5 157 67.5
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 6.6e-48 194.5 160 71.2
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 8.6e-48 194.1 168 68.5
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 8.6e-48 194.1 164 67.1
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.5e-47 193.4 182 62.6
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.5e-47 193.4 158 69.6
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 1.9e-47 193.0 158 69.6
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 2.5e-47 192.6 166 63.9
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 3.3e-47 192.2 165 68.5
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 4.3e-47 191.8 159 68.6
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 7.3e-47 191.0 159 65.4
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 9.5e-47 190.7 165 65.5
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 2.8e-46 189.1 164 65.2
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 3.6e-46 188.7 220 56.4
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 8.0e-46 187.6 165 65.5
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 1.4e-45 186.8 164 63.4
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 1.4e-45 186.8 157 66.2
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 8.9e-45 184.1 158 67.1
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 1.2e-44 183.7 158 64.6
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 1.2e-44 183.7 158 64.6
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 1.5e-44 183.3 161 64.0
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 2.6e-44 182.6 161 62.7
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 3.4e-44 182.2 158 65.2
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 5.8e-44 181.4 161 62.7
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 7.5e-44 181.0 161 62.7
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 2.2e-43 179.5 159 63.5
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 6.4e-43 177.9 158 60.1
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 8.3e-43 177.6 160 65.6
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 8.3e-43 177.6 199 54.8
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 1.4e-42 176.8 158 60.8
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 1.9e-42 176.4 162 59.3
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 3.2e-42 175.6 162 63.0
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 7.0e-42 174.5 141 70.2
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 1.0e-40 170.6 167 61.7
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 1.3e-40 170.2 157 61.8
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 1.7e-40 169.9 159 62.9
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 1.7e-40 169.9 169 57.4
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 3.0e-40 169.1 160 60.0
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 6.6e-40 167.9 159 59.1
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 4.3e-39 165.2 151 60.3
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 9.5e-39 164.1 155 61.9
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 1.2e-38 163.7 142 64.8
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 1.2e-38 163.7 142 64.8
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 1.6e-38 163.3 161 61.5
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 6.2e-38 161.4 164 58.5
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 1.1e-37 160.6 152 62.5
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 1.1e-37 160.6 152 62.5
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 1.8e-37 159.8 155 61.3
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 2.3e-37 159.5 155 60.6
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 5.2e-37 158.3 134 67.2
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 6.8e-37 157.9 167 55.1
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 6.8e-37 157.9 152 58.6
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 8.9e-37 157.5 158 58.2
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 2.0e-36 156.4 143 62.2
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 3.4e-36 155.6 154 54.5
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 5.8e-36 154.8 163 57.7
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 7.5e-36 154.5 152 59.2
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 7.5e-36 154.5 150 64.7
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 9.8e-36 154.1 155 58.7
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 1.3e-35 153.7 152 59.9
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 1.4e-34 150.2 155 58.7
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 1.9e-34 149.8 152 58.6
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 4.1e-34 148.7 132 65.2
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 7.1e-34 147.9 152 55.9
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 9.2e-34 147.5 166 56.6
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 9.2e-34 147.5 152 56.6
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 1.6e-33 146.7 152 57.2
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 2.1e-33 146.4 164 55.5
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 7.8e-33 144.4 158 53.8
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 2.3e-32 142.9 126 66.7
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 3.0e-32 142.5 144 57.6
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 1.1e-31 140.6 152 56.6
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 3.3e-31 139.0 103 78.6
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.2e-30 137.1 156 55.1
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 1.6e-30 136.7 149 57.7
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 3.6e-30 135.6 163 55.8
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 8.1e-30 134.4 118 65.3
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 1.1e-29 134.0 161 53.4
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 2.0e-28 129.8 154 54.5
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 2.6e-28 129.4 151 53.6
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 2.6e-28 129.4 151 53.6
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 2.6e-28 129.4 151 53.6
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 9.9e-28 127.5 117 63.2
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 9.9e-28 127.5 128 59.4
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 1.4e-26 123.6 92 77.2
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 2.4e-26 122.9 166 48.8
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 1.6e-25 120.2 166 48.2
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 2.3e-24 116.3 157 47.8
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 2.5e-23 112.8 163 48.5
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 1.2e-22 110.5 113 59.3
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 2.8e-22 109.4 209 41.1
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 1.1e-21 107.5 138 52.2
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 1.1e-21 107.5 156 39.7
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.5e-20 103.6 98 63.3
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.5e-20 103.6 98 63.3
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 7.8e-17 91.3 99 59.6
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 1.0e-16 90.9 110 50.9
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 1.3e-16 90.5 87 63.2
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 5.1e-16 88.6 141 38.3
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 4.5e-12 75.5 141 38.3
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 3.8e-11 72.4 127 31.5
SEGI_39153 Sequoiadendron giganteum HOM05D004935 ORTHO05D005676 1.9e-10 70.1 114 43.0
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 2.4e-10 69.7 81 55.6
EL10Ac2g03210 Beta vulgaris HOM05D004935 ORTHO05D005676 3.9e-08 62.4 55 52.7
CSS0034638 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 2.5e-07 59.7 50 60.0
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 3.7e-06 55.8 38 63.2


User provided reference genes

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