Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1942 Acer truncatum HOM05D006714 ORTHO05D008103 3.9e-119 431.4 209 100.0
Ciclev10011142m.g Citrus clementina HOM05D006714 ORTHO05D008103 6.3e-101 370.9 207 82.1
Thecc.04G114100 Theobroma cacao HOM05D006714 ORTHO05D008103 4.2e-97 358.2 209 79.9
Duzib211G0559 Durio zibethinus HOM05D006714 ORTHO05D008103 4.0e-95 351.7 209 79.4
Manes.02G077300 Manihot esculenta HOM05D006714 ORTHO05D008103 4.0e-95 351.7 207 77.3
Dinv28198 Davidia involucrata HOM05D006714 ORTHO05D008103 3.3e-94 348.6 209 77.0
Potri.017G130400 Populus trichocarpa HOM05D006714 ORTHO05D008103 4.8e-93 344.7 209 73.7
Gohir.D07G184700 Gossypium hirsutum HOM05D006714 ORTHO05D008103 1.8e-92 342.8 209 78.9
Gohir.A07G178400 Gossypium hirsutum HOM05D006714 ORTHO05D008103 3.1e-92 342.0 209 78.5
Sabra17G0108600 Salix brachista HOM05D006714 ORTHO05D008103 4.1e-92 341.7 209 73.2
Gorai.001G205100 Gossypium raimondii HOM05D006714 ORTHO05D008103 7.0e-92 340.9 209 78.5
QL10p014398 Quercus lobata HOM05D006714 ORTHO05D008103 9.1e-92 340.5 205 75.1
CiPaw.03G072500 Carya illinoinensis HOM05D006714 ORTHO05D008103 4.5e-91 338.2 209 74.2
QL02p058308 Quercus lobata HOM05D006714 ORTHO05D008103 7.7e-91 337.4 205 74.6
TWI77G0889 Tripterygium wilfordii HOM05D006714 ORTHO05D008103 1.3e-90 336.7 208 75.0
SalBow5G2523 Salvia bowleyana HOM05D006714 ORTHO05D008103 1.7e-90 336.3 219 71.7
RcHm_v2.0_Chr2g0123431 Rosa chinensis HOM05D006714 ORTHO05D008103 6.5e-90 334.3 209 74.6
MD15G1138100 Malus domestica HOM05D006714 ORTHO05D008103 8.5e-90 334.0 209 71.8
TWI74G0031 Tripterygium wilfordii HOM05D006714 ORTHO05D008103 8.5e-90 334.0 201 76.1
FvH4_1g25400 Fragaria vesca HOM05D006714 ORTHO05D008103 1.1e-89 333.6 209 75.6
Hma1.2p1_0158F.1_g070140 Hydrangea macrophylla HOM05D006714 ORTHO05D008103 3.2e-89 332.0 210 74.3
Cpa.g.sc116.59 Carica papaya HOM05D006714 ORTHO05D008103 4.2e-89 331.6 207 73.9
Nitab4.5_0000201g0160 Nicotiana tabacum HOM05D006714 ORTHO05D008103 5.5e-89 331.3 208 74.5
Cc07_g13380 Coffea canephora HOM05D006714 ORTHO05D008103 9.4e-89 330.5 208 73.6
Oeu032319.1 Olea europaea HOM05D006714 ORTHO05D008103 9.4e-89 330.5 208 75.0
Rhsim08G0018800 Rhododendron simsii HOM05D006714 ORTHO05D008103 9.4e-89 330.5 209 73.2
Nn4g24295 Nelumbo nucifera HOM05D006714 ORTHO05D008103 3.6e-88 328.6 204 75.0
TAR629G3521 Trochodendron aralioides HOM05D006714 ORTHO05D008103 4.7e-88 328.2 209 71.3
FAN26G1526 Fragaria x ananassa HOM05D006714 ORTHO05D008103 1.0e-87 327.0 227 70.5
CANSAT78G1609 Cannabis sativa HOM05D006714 ORTHO05D008103 1.4e-87 326.6 205 73.7
FAN23G2031 Fragaria x ananassa HOM05D006714 ORTHO05D008103 4.0e-87 325.1 227 70.0
DCAR_014171 Daucus carota HOM05D006714 ORTHO05D008103 5.2e-87 324.7 209 73.2
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 2.0e-86 322.8 189 79.4
Peaxi162Scf00305g00412 Petunia axillaris HOM05D006714 ORTHO05D008103 4.4e-86 321.6 191 77.5
Migut.K00904 Erythranthe guttata HOM05D006714 ORTHO05D008103 7.5e-86 320.9 208 71.6
GSVIVG01030704001 Vitis vinifera HOM05D006714 ORTHO05D008103 7.5e-86 320.9 193 74.6
Haze_14269 Corylus avellana HOM05D006714 ORTHO05D008103 2.2e-85 319.3 209 71.3
Cfa007804 Carpinus fangiana HOM05D006714 ORTHO05D008103 1.8e-84 316.2 209 70.8
arahy.Tifrunner.gnm1.ann1.E1Z4YV Arachis hypogaea HOM05D006714 ORTHO05D008103 5.4e-84 314.7 207 69.6
arahy.Tifrunner.gnm1.ann1.ZV72ZC Arachis hypogaea HOM05D006714 ORTHO05D008103 7.0e-84 314.3 207 69.6
Hund13103 Selenicereus undatus HOM05D006714 ORTHO05D008103 1.6e-83 313.2 209 68.4
SGA_v2.0_scaffold45G17176 Striga asiatica HOM05D006714 ORTHO05D008103 2.7e-83 312.4 203 72.4
HanXRQChr15g0483231 Helianthus annuus HOM05D006714 ORTHO05D008103 3.5e-83 312.0 210 70.0
CsaV3_5G024210 Cucumis sativus L. HOM05D006714 ORTHO05D008103 2.3e-82 309.3 209 68.9
LjContig00141g0000721 Lotus japonicus HOM05D006714 ORTHO05D008103 1.1e-81 307.0 193 74.1
PGR031G2162 Punica granatum HOM05D006714 ORTHO05D008103 3.3e-81 305.4 211 68.7
Sed0011157 Sechium edule HOM05D006714 ORTHO05D008103 7.2e-81 304.3 209 66.5
Aqoxy1G00382 Aquilegia oxysepala HOM05D006714 ORTHO05D008103 1.6e-80 303.1 194 72.2
ClCG01G008770 Citrullus lanatus HOM05D006714 ORTHO05D008103 1.6e-80 303.1 197 71.1
Medtr5g078170 Medicago truncatula HOM05D006714 ORTHO05D008103 1.6e-80 303.1 193 73.1
THA.LOC104820908 Tarenaya hassleriana HOM05D006714 ORTHO05D008103 2.8e-80 302.4 200 70.5
Ca_05830_v3 Cicer arietinum L. HOM05D006714 ORTHO05D008103 3.6e-80 302.0 193 72.0
VMungo0647G1195 Vigna mungo HOM05D006714 ORTHO05D008103 2.3e-79 299.3 189 75.1
Aa31LG11G13040 Aethionema arabicum HOM05D006714 ORTHO05D008103 4.0e-79 298.5 186 73.7
ECA247G1081 Erigeron canadensis HOM05D006714 ORTHO05D008103 8.9e-79 297.4 209 66.5
CARHR196610 Cardamine hirsuta HOM05D006714 ORTHO05D008103 1.2e-78 297.0 212 65.6
Thhalv10012945m.g Eutrema salsugineum HOM05D006714 ORTHO05D008103 1.5e-78 296.6 207 67.6
PSO017G5883 Papaver somniferum HOM05D006714 ORTHO05D008103 1.5e-78 296.6 212 67.0
Solyc11g011060.3 Solanum lycopersicum HOM05D006714 ORTHO05D008103 1.5e-78 296.6 209 67.0
vmacro18531 Vaccinium macrocarpon HOM05D006714 ORTHO05D008103 4.4e-78 295.0 274 54.4
AT5G16610 Arabidopsis thaliana HOM05D006714 ORTHO05D008103 5.7e-78 294.7 209 66.5
Sopen11g005830 Solanum pennellii HOM05D006714 ORTHO05D008103 7.5e-78 294.3 209 66.5
CAN.G222.36 Capsicum annuum HOM05D006714 ORTHO05D008103 9.8e-78 293.9 209 67.9
Sp6g27560 Schrenkiella parvula HOM05D006714 ORTHO05D008103 2.2e-77 292.7 213 64.8
EL10Ac2g03178 Beta vulgaris HOM05D006714 ORTHO05D008103 4.9e-77 291.6 207 64.3
A10p22600 Brassica napus HOM05D006714 ORTHO05D008103 1.4e-76 290.0 213 64.8
BraA10t44322Z Brassica rapa HOM05D006714 ORTHO05D008103 1.4e-76 290.0 213 64.8
PSO063G0106 Papaver somniferum HOM05D006714 ORTHO05D008103 1.4e-76 290.0 213 66.2
AL6G27570 Arabidopsis lyrata HOM05D006714 ORTHO05D008103 2.4e-76 289.3 210 65.2
Carub.0006s1481 Capsella rubella HOM05D006714 ORTHO05D008103 9.2e-76 287.3 212 63.7
C09p60510 Brassica napus HOM05D006714 ORTHO05D008103 2.7e-75 285.8 213 63.8
BolC9t58884H Brassica oleracea HOM05D006714 ORTHO05D008103 2.7e-75 285.8 213 63.8
AUR62037796 Chenopodium quinoa HOM05D006714 ORTHO05D008103 3.5e-75 285.4 207 63.3
Lalb_Chr04g0251401 Lupinus albus HOM05D006714 ORTHO05D008103 1.5e-73 280.0 185 71.9
AUR62018218 Chenopodium quinoa HOM05D006714 ORTHO05D008103 1.9e-73 279.6 207 63.8
Nitab4.5_0006893g0050 Nicotiana tabacum HOM05D006714 ORTHO05D008103 1.9e-73 279.6 206 65.0
Os03g0221300 Oryza sativa ssp. japonica HOM05D006714 ORTHO05D008103 5.6e-73 278.1 207 64.7
TPR.G8266 Trifolium pratense HOM05D006714 ORTHO05D008103 6.1e-72 274.6 193 67.9
unitig_748.g8636 Utricularia gibba HOM05D006714 ORTHO05D008103 6.1e-72 274.6 187 67.9
HPP92_011112 Vanilla planifolia HOM05D006714 ORTHO05D008103 3.4e-70 268.9 207 61.4
Lsat_1_v5_gn_3_63641 Lactuca sativa HOM05D006714 ORTHO05D008103 4.4e-70 268.5 192 65.6
BcaB08g36834 Brassica carinata HOM05D006714 ORTHO05D008103 9.8e-70 267.3 216 60.2
ATR0171G009 Amborella trichopoda HOM05D006714 ORTHO05D008103 2.9e-69 265.8 204 60.3
HPP92_011097 Vanilla planifolia HOM05D006714 ORTHO05D008103 3.2e-68 262.3 207 60.4
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 4.6e-67 258.5 191 62.3
Actinidia35727 Actinidia chinensis HOM05D006714 ORTHO05D008103 4.7e-64 248.4 209 60.8
CDE07G1834 Ceratophyllum demersum HOM05D006714 ORTHO05D008103 1.1e-60 237.3 168 61.3
SalBow5G2948 Salvia bowleyana HOM05D006714 ORTHO05D008103 1.1e-57 227.3 208 55.8
Pp3c24_16350 Physcomitrium patens HOM05D006714 ORTHO05D008103 4.0e-55 218.8 167 58.1
Pp3c23_20330 Physcomitrium patens HOM05D006714 ORTHO05D008103 1.3e-53 213.8 204 48.0
QL93p0100_0731 Quercus lobata HOM05D006714 ORTHO05D008103 2.2e-53 213.0 116 81.0
Prupe.4G281200 Prunus persica HOM05D006714 ORTHO05D008103 8.3e-53 211.1 121 79.3
Dinv19038 Davidia involucrata HOM05D006714 ORTHO05D008103 7.1e-52 208.0 119 79.8
Actinidia28805 Actinidia chinensis HOM05D006714 ORTHO05D008103 3.9e-50 202.2 119 78.2
Sc11g0004560 Simmondsia chinensis HOM05D006714 ORTHO05D008103 6.6e-50 201.4 121 76.9
SMO340G0205 Selaginella moellendorffii HOM05D006714 ORTHO05D008103 1.1e-49 200.7 180 51.7
Eucgr.F02863 Eucalyptus grandis HOM05D006714 ORTHO05D008103 1.8e-47 193.4 120 75.0
Glyma.14G214400 Glycine max HOM05D006714 ORTHO05D008103 1.3e-45 187.2 121 72.7
PSO478G0421 Papaver somniferum HOM05D006714 ORTHO05D008103 1.7e-45 186.8 119 71.4
CBR_g12792 Chara braunii HOM05D006714 ORTHO05D008103 2.2e-45 186.4 158 50.6
SEGI_28129 Sequoiadendron giganteum HOM05D006714 ORTHO05D008103 1.6e-35 153.7 98 69.4
MELO3C022869.2 Cucumis melo HOM05D006714 ORTHO05D008103 2.7e-27 126.3 96 62.5
Psat2g047840 Pisum sativum HOM05D006714 ORTHO05D008103 4.8e-24 115.5 72 69.4
Phvul.008G236600 Phaseolus vulgaris HOM05D006714 ORTHO05D008103 6.5e-13 78.6 52 65.4


User provided reference genes

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