Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1922 Acer truncatum HOM05D004969 ORTHO05D006085 3.7e-161 571.6 321 100.0
TAR381G0816 Trochodendron aralioides HOM05D004969 ORTHO05D006085 1.4e-94 350.5 322 63.0
GSVIVG01025999001 Vitis vinifera HOM05D004969 ORTHO05D006085 4.8e-92 342.0 329 58.7
Manes.02G076800 Manihot esculenta HOM05D004969 ORTHO05D006085 3.1e-91 339.3 329 60.5
Phvul.006G083300 Phaseolus vulgaris HOM05D004969 ORTHO05D006085 2.2e-89 333.2 319 59.2
VMungo0540G2242 Vigna mungo HOM05D004969 ORTHO05D006085 2.9e-89 332.8 320 59.7
Lalb_Chr18g0053961 Lupinus albus HOM05D004969 ORTHO05D006085 5.0e-89 332.0 328 61.0
Migut.N03359 Erythranthe guttata HOM05D004969 ORTHO05D006085 6.5e-89 331.6 317 59.3
Cpa.g.sc116.57 Carica papaya HOM05D004969 ORTHO05D006085 9.4e-88 327.8 248 69.8
CSS0003565 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 1.6e-87 327.0 320 60.6
Eucgr.A02100 Eucalyptus grandis HOM05D004969 ORTHO05D006085 8.0e-87 324.7 325 58.5
Peaxi162Scf00391g00434 Petunia axillaris HOM05D004969 ORTHO05D006085 1.0e-86 324.3 327 57.2
CSS0028019 Camellia sinensis var. sinensis HOM05D004969 ORTHO05D006085 1.4e-86 323.9 320 60.3
MBI06_g36481_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 1.4e-86 323.9 323 57.3
Lj6g0017586 Lotus japonicus HOM05D004969 ORTHO05D006085 2.3e-86 323.2 321 59.5
Aqoxy2G02250 Aquilegia oxysepala HOM05D004969 ORTHO05D006085 3.0e-86 322.8 252 66.7
Actinidia23029 Actinidia chinensis HOM05D004969 ORTHO05D006085 6.7e-86 321.6 332 56.9
Gohir.D07G082700 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.1e-85 320.9 323 58.5
Potri.004G087100 Populus trichocarpa HOM05D004969 ORTHO05D006085 2.0e-85 320.1 329 57.4
MSTRG.22462 Avicennia marina HOM05D004969 ORTHO05D006085 5.7e-85 318.5 317 58.0
PGR042G0690 Punica granatum HOM05D004969 ORTHO05D006085 5.7e-85 318.5 325 58.8
CAN.G2.7 Capsicum annuum HOM05D004969 ORTHO05D006085 3.7e-84 315.8 322 62.7
Lalb_Chr15g0085491 Lupinus albus HOM05D004969 ORTHO05D006085 3.7e-84 315.8 326 57.4
HanXRQChr02g0036761 Helianthus annuus HOM05D004969 ORTHO05D006085 8.2e-84 314.7 338 55.0
CsaV3_5G020190 Cucumis sativus L. HOM05D004969 ORTHO05D006085 1.1e-83 314.3 320 56.2
Ciclev10011792m.g Citrus clementina HOM05D004969 ORTHO05D006085 1.4e-83 313.9 326 56.1
TWI53G0342 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 1.8e-83 313.5 335 53.4
CANSAT78G2392 Cannabis sativa HOM05D004969 ORTHO05D006085 2.4e-83 313.2 324 57.1
Ca_15098_v3 Cicer arietinum L. HOM05D004969 ORTHO05D006085 2.4e-83 313.2 320 57.8
Rhsim12G0005600 Rhododendron simsii HOM05D004969 ORTHO05D006085 3.1e-83 312.8 324 59.3
HanXRQChr04g0102091 Helianthus annuus HOM05D004969 ORTHO05D006085 5.3e-83 312.0 333 55.6
MD07G1079600 Malus domestica HOM05D004969 ORTHO05D006085 5.3e-83 312.0 346 52.6
CiPaw.06G151300 Carya illinoinensis HOM05D004969 ORTHO05D006085 7.0e-83 311.6 331 54.7
Potri.017G129800 Populus trichocarpa HOM05D004969 ORTHO05D006085 1.2e-82 310.8 324 57.4
Glyma.11G202700 Glycine max HOM05D004969 ORTHO05D006085 1.6e-82 310.5 318 59.1
MELO3C025065.2 Cucumis melo HOM05D004969 ORTHO05D006085 5.9e-82 308.5 320 56.2
FvH4_7g07530 Fragaria vesca HOM05D004969 ORTHO05D006085 5.9e-82 308.5 322 56.2
Gorai.001G088300 Gossypium raimondii HOM05D004969 ORTHO05D006085 7.7e-82 308.1 323 57.6
MD02G1235900 Malus domestica HOM05D004969 ORTHO05D006085 7.7e-82 308.1 348 52.0
Prupe.2G102700 Prunus persica HOM05D004969 ORTHO05D006085 1.3e-81 307.4 345 53.6
Duzib133G0278 Durio zibethinus HOM05D004969 ORTHO05D006085 1.7e-81 307.0 323 58.2
Gohir.A07G077900 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.7e-81 307.0 323 57.3
Cfa005580 Carpinus fangiana HOM05D004969 ORTHO05D006085 3.8e-81 305.8 342 53.2
Hma1.2p1_0342F.1_g130660 Hydrangea macrophylla HOM05D004969 ORTHO05D006085 5.0e-81 305.4 258 65.5
Glyma.18G048200 Glycine max HOM05D004969 ORTHO05D006085 1.1e-80 304.3 318 58.5
Solyc11g020300.2 Solanum lycopersicum HOM05D004969 ORTHO05D006085 1.1e-80 304.3 322 58.7
Sopen11g010590 Solanum pennellii HOM05D004969 ORTHO05D006085 1.1e-80 304.3 324 56.8
PGSC0003DMG400023281 Solanum tuberosum HOM05D004969 ORTHO05D006085 1.1e-80 304.3 323 57.0
Duzib211G0057 Durio zibethinus HOM05D004969 ORTHO05D006085 7.2e-80 301.6 322 57.5
Cc10_g11320 Coffea canephora HOM05D004969 ORTHO05D006085 9.4e-80 301.2 256 63.7
Nitab4.5_0000365g0150 Nicotiana tabacum HOM05D004969 ORTHO05D006085 4.7e-79 298.9 334 54.8
Sed0015915 Sechium edule HOM05D004969 ORTHO05D006085 8.0e-79 298.1 320 55.0
RcHm_v2.0_Chr1g0339281 Rosa chinensis HOM05D004969 ORTHO05D006085 1.0e-78 297.7 327 54.1
TWI77G0063 Tripterygium wilfordii HOM05D004969 ORTHO05D006085 4.0e-78 295.8 334 52.7
arahy.Tifrunner.gnm1.ann1.70N71I Arachis hypogaea HOM05D004969 ORTHO05D006085 6.8e-78 295.0 342 52.9
Dinv41780 Davidia involucrata HOM05D004969 ORTHO05D006085 6.8e-78 295.0 287 59.6
Thhalv10013528m.g Eutrema salsugineum HOM05D004969 ORTHO05D006085 6.8e-78 295.0 323 59.4
Sabra17G0108000 Salix brachista HOM05D004969 ORTHO05D006085 6.8e-78 295.0 358 52.2
Aa31LG11G13030 Aethionema arabicum HOM05D004969 ORTHO05D006085 1.5e-77 293.9 252 62.3
ECA247G1475 Erigeron canadensis HOM05D004969 ORTHO05D006085 1.5e-77 293.9 330 58.8
Carub.0006s1483 Capsella rubella HOM05D004969 ORTHO05D006085 2.6e-77 293.1 326 58.0
THA.LOC104827189 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 7.5e-77 291.6 311 56.3
AT5G16620 Arabidopsis thaliana HOM05D004969 ORTHO05D006085 1.3e-76 290.8 244 62.3
FAN03G1223 Fragaria x ananassa HOM05D004969 ORTHO05D006085 1.3e-76 290.8 366 50.3
Thecc.04G114600 Theobroma cacao HOM05D004969 ORTHO05D006085 1.3e-76 290.8 223 69.1
PSO170G6732 Papaver somniferum HOM05D004969 ORTHO05D006085 2.2e-76 290.0 312 56.1
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 2.8e-76 289.7 322 56.2
Sp6g27550 Schrenkiella parvula HOM05D004969 ORTHO05D006085 2.8e-76 289.7 244 62.3
AL6G27590 Arabidopsis lyrata HOM05D004969 ORTHO05D006085 4.8e-76 288.9 244 62.3
CARHR196580 Cardamine hirsuta HOM05D004969 ORTHO05D006085 8.3e-76 288.1 257 60.3
PSO017G0293 Papaver somniferum HOM05D004969 ORTHO05D006085 8.3e-76 288.1 274 60.6
THA.LOC104802933 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 8.3e-76 288.1 220 65.5
Nitab4.5_0003818g0050 Nicotiana tabacum HOM05D004969 ORTHO05D006085 1.4e-75 287.3 344 52.3
CDE04G1977 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 3.1e-75 286.2 324 51.9
Medtr3g063200 Medicago truncatula HOM05D004969 ORTHO05D006085 4.1e-75 285.8 322 55.0
BraA02t05337Z Brassica rapa HOM05D004969 ORTHO05D006085 7.0e-75 285.0 324 57.7
BcaB08g36833 Brassica carinata HOM05D004969 ORTHO05D006085 1.2e-74 284.3 272 58.1
Nn5g27434 Nelumbo nucifera HOM05D004969 ORTHO05D006085 1.2e-74 284.3 231 64.9
Sc23g0001560 Simmondsia chinensis HOM05D004969 ORTHO05D006085 1.2e-74 284.3 320 54.7
A10p22590 Brassica napus HOM05D004969 ORTHO05D006085 2.0e-74 283.5 324 56.8
BraA10t44321Z Brassica rapa HOM05D004969 ORTHO05D006085 2.0e-74 283.5 324 56.8
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 2.0e-74 283.5 304 54.9
Psat5g144880 Pisum sativum HOM05D004969 ORTHO05D006085 3.5e-74 282.7 320 55.0
BolC2t06766H Brassica oleracea HOM05D004969 ORTHO05D006085 2.9e-73 279.6 324 57.7
C09p60500 Brassica napus HOM05D004969 ORTHO05D006085 3.0e-70 269.6 327 52.3
BolC9t58883H Brassica oleracea HOM05D004969 ORTHO05D006085 3.0e-70 269.6 327 52.3
Lsat_1_v5_gn_1_25461 Lactuca sativa HOM05D004969 ORTHO05D006085 5.2e-70 268.9 330 50.6
ATR1136G165 Amborella trichopoda HOM05D004969 ORTHO05D006085 5.7e-69 265.4 312 51.0
HPP92_004490 Vanilla planifolia HOM05D004969 ORTHO05D006085 1.7e-68 263.8 320 52.2
Oeu064082.1 Olea europaea HOM05D004969 ORTHO05D006085 3.7e-68 262.7 328 48.8
HPP92_004464 Vanilla planifolia HOM05D004969 ORTHO05D006085 3.1e-67 259.6 320 51.2
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 7.0e-67 258.5 317 55.5
Zm00001eb082230 Zea mays HOM05D004969 ORTHO05D006085 3.8e-65 252.7 278 51.8
ClCG01G008270 Citrullus lanatus HOM05D004969 ORTHO05D006085 6.6e-65 251.9 320 50.0
Os04g0439900 Oryza sativa ssp. japonica HOM05D004969 ORTHO05D006085 6.6e-65 251.9 278 51.1
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 8.6e-65 251.5 308 56.2
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 1.9e-64 250.4 306 55.9
Sabra04G0058000 Salix brachista HOM05D004969 ORTHO05D006085 4.2e-64 249.2 214 61.7
CiPaw.05G038800 Carya illinoinensis HOM05D004969 ORTHO05D006085 1.6e-63 247.3 352 48.0
FAN06G2886 Fragaria x ananassa HOM05D004969 ORTHO05D006085 4.7e-63 245.7 324 49.4
FAN10G2597 Fragaria x ananassa HOM05D004969 ORTHO05D006085 5.2e-62 242.3 324 48.8
QL11p019695 Quercus lobata HOM05D004969 ORTHO05D006085 8.3e-60 235.0 501 35.7
vmacro00973 Vaccinium macrocarpon HOM05D004969 ORTHO05D006085 8.3e-60 235.0 200 61.0
arahy.Tifrunner.gnm1.ann1.247CUK Arachis hypogaea HOM05D004969 ORTHO05D006085 1.1e-59 234.6 318 50.3
unitig_8.g3641 Utricularia gibba HOM05D004969 ORTHO05D006085 1.4e-59 234.2 318 49.1
Hund16770 Selenicereus undatus HOM05D004969 ORTHO05D006085 1.8e-59 233.8 208 59.1
DCAR_014392 Daucus carota HOM05D004969 ORTHO05D006085 3.2e-59 233.0 320 45.6
Hund27125 Selenicereus undatus HOM05D004969 ORTHO05D006085 9.2e-59 231.5 478 37.0
Hund27130 Selenicereus undatus HOM05D004969 ORTHO05D006085 9.2e-59 231.5 478 37.0
Pp3c26_4000 Physcomitrium patens HOM05D004969 ORTHO05D006085 1.2e-58 231.1 265 50.9
Mapoly0007s0079 Marchantia polymorpha HOM05D004969 ORTHO05D006085 2.7e-58 229.9 327 49.2
Pp3c4_25740 Physcomitrium patens HOM05D004969 ORTHO05D006085 8.6e-57 224.9 322 45.3
SEGI_27085 Sequoiadendron giganteum HOM05D004969 ORTHO05D006085 1.1e-56 224.6 307 48.5
MSTRG.1535 Avicennia marina HOM05D004969 ORTHO05D006085 9.8e-53 211.5 315 45.4
SMO367G0370 Selaginella moellendorffii HOM05D004969 ORTHO05D006085 3.0e-49 199.9 145 64.8
AagrBONN_evm.TU.Sc2ySwM_362.1764 Anthoceros agrestis HOM05D004969 ORTHO05D006085 5.0e-49 199.1 255 46.3
CBR_g49427 Chara braunii HOM05D004969 ORTHO05D006085 2.8e-47 193.4 263 47.5
HanXRQChr02g0036751 Helianthus annuus HOM05D004969 ORTHO05D006085 8.0e-47 191.8 297 41.4
AUR62023559 Chenopodium quinoa HOM05D004969 ORTHO05D006085 1.4e-46 191.0 228 48.2
Zm00001eb422870 Zea mays HOM05D004969 ORTHO05D006085 1.5e-45 187.6 261 48.3
Gohir.A07G173560 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.2e-42 177.9 116 73.3
CDE07G1303 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 7.8e-42 175.3 262 43.9
TPR.G14671 Trifolium pratense HOM05D004969 ORTHO05D006085 1.2e-39 167.9 99 76.8
HanXRQChr02g0036561 Helianthus annuus HOM05D004969 ORTHO05D006085 2.0e-37 160.6 253 42.3
Cre12.g508000 Chlamydomonas reinhardtii HOM05D004969 ORTHO05D006085 6.0e-34 149.1 141 46.8
TPR.G37348 Trifolium pratense HOM05D004969 ORTHO05D006085 9.9e-29 131.7 131 58.8
CDE07G1829 Ceratophyllum demersum HOM05D004969 ORTHO05D006085 6.6e-25 119.0 67 80.6
MBI06_g45016_MAGBIO Magnolia biondii HOM05D004969 ORTHO05D006085 6.9e-22 109.0 197 43.1
FAN15G1524 Fragaria x ananassa HOM05D004969 ORTHO05D006085 3.4e-21 106.7 74 73.0
MCO11G221 Micromonas commoda HOM05D004969 ORTHO05D006085 8.4e-20 102.1 276 30.8
MELO3C025953.2 Cucumis melo HOM05D004969 ORTHO05D006085 7.1e-19 99.0 64 68.8
Oeu000537.1 Olea europaea HOM05D004969 ORTHO05D006085 1.3e-17 94.7 64 70.3
EL10Ac1g00146 Beta vulgaris HOM05D004969 ORTHO05D006085 4.8e-15 86.3 233 35.2
AUR62004590 Chenopodium quinoa HOM05D004969 ORTHO05D006085 6.9e-14 82.4 209 39.2
THA.LOC104802935 Tarenaya hassleriana HOM05D004969 ORTHO05D006085 2.0e-13 80.9 91 53.8
Hund14746 Selenicereus undatus HOM05D004969 ORTHO05D006085 6.4e-12 75.9 55 61.8
FAN01G1532 Fragaria x ananassa HOM05D004969 ORTHO05D006085 3.2e-11 73.6 218 41.3
Gohir.A07G173840 Gossypium hirsutum HOM05D004969 ORTHO05D006085 1.6e-10 71.2 161 41.6
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 6.0e-10 69.3 75 40.0
FvH4_2g09383 Fragaria vesca HOM05D004969 ORTHO05D006085 7.9e-10 68.9 47 63.8
MELO3C033346.2 Cucumis melo HOM05D004969 ORTHO05D044988 5.3e-06 56.2 54 53.7


User provided reference genes

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