Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 8.1e-197 690.3 359 100.0
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 5.5e-161 571.2 361 80.3
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 9.3e-161 570.5 362 82.3
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 1.2e-160 570.1 364 79.1
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 8.7e-159 563.9 360 78.3
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 1.1e-158 563.5 362 81.8
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 1.6e-157 559.7 362 77.1
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 1.6e-157 559.7 362 77.1
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 2.8e-157 558.9 359 76.0
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 4.8e-157 558.1 360 78.3
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 4.0e-156 555.1 376 76.6
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 4.5e-155 551.6 362 76.0
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 5.8e-155 551.2 360 76.4
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 7.6e-155 550.8 360 76.4
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 6.0e-152 541.2 333 82.3
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 1.3e-151 540.0 360 74.4
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.8e-151 539.7 360 75.3
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.3e-151 539.3 356 75.6
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 5.1e-151 538.1 331 82.2
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 4.3e-150 535.0 356 75.0
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 4.3e-150 535.0 360 73.6
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 7.4e-150 534.3 360 73.3
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 9.7e-150 533.9 359 75.2
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 1.3e-149 533.5 360 73.9
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 2.2e-149 532.7 360 73.3
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 2.2e-149 532.7 360 73.3
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 2.8e-149 532.3 334 79.3
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 8.2e-149 530.8 356 75.0
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 4.1e-148 528.5 362 74.3
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 6.9e-148 527.7 360 73.1
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 5.9e-147 524.6 355 76.6
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 1.3e-146 523.5 358 74.0
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 5.0e-146 521.5 359 73.3
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 6.5e-146 521.2 356 73.3
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.1e-145 520.4 360 73.6
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 1.2e-144 516.9 345 74.5
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 1.6e-144 516.5 379 71.0
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 2.1e-144 516.2 355 73.2
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 1.0e-143 513.8 359 71.3
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 1.8e-143 513.1 437 65.2
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 1.8e-143 513.1 359 71.0
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 2.3e-143 512.7 353 74.2
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 5.1e-143 511.5 360 71.4
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 1.1e-142 510.4 357 71.4
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 1.1e-142 510.4 330 76.4
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 1.5e-142 510.0 369 69.6
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 2.5e-142 509.2 360 72.2
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 2.5e-142 509.2 359 71.6
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 3.3e-142 508.8 360 70.8
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 4.3e-142 508.4 361 71.2
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 9.7e-142 507.3 362 75.7
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 1.3e-141 506.9 366 70.2
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 1.7e-141 506.5 384 68.8
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 1.7e-141 506.5 355 71.8
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 2.8e-141 505.8 362 71.5
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 1.1e-140 503.8 412 65.5
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 3.1e-140 502.3 359 70.8
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 4.1e-140 501.9 363 71.9
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 4.1e-140 501.9 360 70.0
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 5.3e-140 501.5 364 67.3
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 5.3e-140 501.5 358 71.8
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 1.2e-139 500.4 330 75.2
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 5.9e-139 498.0 356 72.2
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.3e-138 496.9 356 71.6
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 1.7e-138 496.5 370 67.0
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 2.9e-138 495.7 357 72.0
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 8.5e-138 494.2 367 70.6
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 7.2e-137 491.1 364 72.0
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 6.1e-136 488.0 365 70.7
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 5.1e-135 485.0 363 70.8
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 6.7e-135 484.6 358 71.2
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 1.7e-133 479.9 330 71.8
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 7.0e-132 474.6 362 68.0
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 2.6e-131 472.6 282 82.3
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 5.7e-126 454.9 356 68.0
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 7.0e-124 448.0 356 61.8
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 1.6e-123 446.8 339 67.6
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.2e-122 443.0 351 64.7
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 2.2e-122 443.0 355 63.4
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 8.5e-122 441.0 332 70.8
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 2.5e-121 439.5 352 64.8
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 2.5e-121 439.5 264 79.9
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 1.0e-119 434.1 301 69.8
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 6.7e-119 431.4 264 84.1
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 5.3e-116 421.8 337 65.9
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 8.5e-114 414.5 270 83.0
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 1.2e-112 410.6 262 79.8
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 1.4e-111 407.1 265 82.6
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 2.3e-111 406.4 356 61.8
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 2.2e-109 399.8 271 75.3
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 2.2e-109 399.8 301 66.4
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 2.4e-108 396.4 261 77.4
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.2e-107 394.0 360 58.9
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 5.9e-107 391.7 262 75.2
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 2.1e-104 383.3 259 75.7
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 1.5e-102 377.1 353 55.0
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 9.8e-102 374.4 329 58.7
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 2.2e-101 373.2 330 56.4
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 1.1e-100 370.9 258 72.9
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 3.1e-100 369.4 290 65.2
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 1.2e-94 350.9 256 69.1
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 2.6e-94 349.7 311 58.8
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.4e-92 344.0 207 85.0
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 6.6e-90 335.1 355 49.9
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 3.9e-82 309.3 187 83.4
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 2.6e-78 296.6 343 47.2
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 7.8e-75 285.0 341 46.9
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 3.0e-66 256.5 183 68.3
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 3.1e-63 246.5 435 36.6
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.1e-52 211.5 219 52.5
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 7.1e-52 208.8 143 75.5
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 1.0e-50 204.9 468 31.6
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 6.7e-50 202.2 216 50.9
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.7e-45 187.6 148 67.6
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.1e-36 158.3 151 55.0
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 1.3e-34 151.4 319 30.7
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.4e-31 140.6 108 67.6
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 3.1e-31 140.2 144 51.4
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 5.9e-30 136.0 138 52.9
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.4e-28 131.3 118 59.3
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.2e-27 128.3 96 62.5
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 9.7e-25 118.6 75 74.7
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 1.7e-24 117.9 81 67.9
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 1.1e-23 115.2 73 74.0
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 2.4e-23 114.0 320 30.3
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 5.0e-21 106.3 77 71.4
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 1.8e-18 97.8 66 74.2
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 1.7e-08 64.7 124 33.9
Oeu044418.1 Olea europaea HOM05D005388 ORTHO05D006281 4.8e-08 63.2 150 28.7
unitig_37.g12191 Utricularia gibba HOM05D005388 ORTHO05D006281 4.8e-08 63.2 146 31.5
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.3e-07 59.7 147 26.5
RcHm_v2.0_Chr7g0213451 Rosa chinensis HOM05D005388 ORTHO05D006281 5.3e-07 59.7 147 25.9
Sabra16G0117800 Salix brachista HOM05D005388 ORTHO05D006281 7.0e-07 59.3 219 26.5
Cpa.g.sc89.56 Carica papaya HOM05D005388 ORTHO05D006281 1.2e-06 58.5 151 27.8
MSTRG.16020 Avicennia marina HOM05D005388 ORTHO05D006281 1.6e-06 58.2 143 28.0
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.0e-06 57.8 147 25.9
FAN18G3073 Fragaria x ananassa HOM05D005388 ORTHO05D006281 2.0e-06 57.8 147 25.9
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 2.6e-06 57.4 178 27.5
Haze_06907 Corylus avellana HOM05D005388 ORTHO05D006281 2.6e-06 57.4 147 27.9
MD10G1330400 Malus domestica HOM05D005388 ORTHO05D006281 3.5e-06 57.0 148 26.4
SalBow8G2877 Salvia bowleyana HOM05D005388 ORTHO05D006281 3.5e-06 57.0 130 31.5
Atru.chr1.2476 Acer truncatum HOM05D005388 ORTHO05D006281 4.5e-06 56.6 143 30.1
CiPaw.09G101500 Carya illinoinensis HOM05D005388 ORTHO05D006281 4.5e-06 56.6 141 27.7
Psat2g176960 Pisum sativum HOM05D003894 ORTHO05D004584 4.5e-06 56.6 118 32.2
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 4.5e-06 56.6 182 24.2
GSVIVG01004448001 Vitis vinifera HOM05D005388 ORTHO05D006281 4.5e-06 56.6 149 25.5
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 5.9e-06 56.2 147 25.2
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 5.9e-06 56.2 135 31.9
Ah.10g037930 Amaranthus hybridus HOM05D006412 ORTHO05D008025 7.7e-06 55.8 32 81.2
Cc09_g05060 Coffea canephora HOM05D005388 ORTHO05D006281 7.7e-06 55.8 139 27.3
Cc09_g05080 Coffea canephora HOM05D005388 ORTHO05D006281 7.7e-06 55.8 139 27.3
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 7.7e-06 55.8 142 28.2
SGA_v2.0_scaffold49G18245 Striga asiatica HOM05D005388 ORTHO05D006281 7.7e-06 55.8 143 28.7
vmacro03650 Vaccinium macrocarpon HOM05D005388 ORTHO05D006281 7.7e-06 55.8 142 29.6


User provided reference genes

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