Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 1.4e-133 479.6 239 100.0
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 7.2e-93 344.4 236 73.3
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 5.9e-87 324.7 240 67.9
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 1.7e-86 323.2 245 68.2
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 1.5e-85 320.1 241 67.2
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 6.8e-83 311.2 213 71.4
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 8.9e-83 310.8 208 72.1
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 9.8e-82 307.4 242 64.9
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 9.8e-82 307.4 240 65.0
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 3.1e-80 302.4 242 63.2
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.2e-79 300.4 239 65.3
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.7e-79 299.3 238 64.7
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 2.7e-79 299.3 238 64.7
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 4.5e-79 298.5 238 64.7
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 7.8e-79 297.7 241 62.7
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 1.0e-78 297.4 231 63.6
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 1.3e-78 297.0 244 61.1
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.7e-78 296.6 211 68.7
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.7e-78 296.6 213 67.6
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 3.8e-78 295.4 241 64.3
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 6.6e-78 294.7 219 67.6
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 1.5e-77 293.5 242 62.0
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.5e-77 293.5 211 67.3
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 1.9e-77 293.1 247 60.3
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 3.3e-77 292.4 247 60.7
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 2.1e-76 289.7 240 60.8
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 3.6e-76 288.9 239 62.3
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 8.0e-76 287.7 247 60.7
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 8.9e-75 284.3 242 59.1
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 2.0e-74 283.1 240 60.4
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.0e-74 283.1 228 62.3
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 2.0e-74 283.1 233 65.2
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.6e-74 282.7 224 63.8
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 4.4e-74 282.0 241 61.4
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 9.8e-74 280.8 240 59.6
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 9.8e-74 280.8 229 65.1
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 1.7e-73 280.0 224 62.9
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 2.2e-73 279.6 207 64.7
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.2e-73 279.6 196 70.9
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 2.2e-73 279.6 231 61.9
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 2.9e-73 279.3 274 54.0
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 2.9e-73 279.3 233 56.7
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 3.7e-73 278.9 239 59.4
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 3.7e-73 278.9 237 59.1
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 1.1e-72 277.3 243 59.3
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 2.4e-72 276.2 235 60.0
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 7.0e-72 274.6 235 60.9
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 7.0e-72 274.6 183 72.7
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 9.2e-72 274.2 209 65.6
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 9.2e-72 274.2 196 69.9
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 9.2e-72 274.2 236 62.7
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.2e-71 273.9 243 58.8
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 1.6e-71 273.5 239 60.7
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 2.0e-71 273.1 241 58.9
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 2.0e-71 273.1 200 69.0
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 7.8e-71 271.2 178 71.9
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.0e-70 270.8 217 62.2
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 5.0e-70 268.5 246 58.1
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 6.6e-70 268.1 202 68.8
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 6.6e-70 268.1 199 67.3
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 1.5e-69 266.9 233 59.7
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.5e-69 266.9 188 67.6
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.5e-69 266.2 207 63.8
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 2.5e-69 266.2 182 70.3
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.5e-69 266.2 200 66.5
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 5.6e-69 265.0 234 58.1
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 1.2e-68 263.8 244 59.4
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.6e-68 263.5 234 56.0
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 1.6e-68 263.5 200 66.5
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 1.6e-68 263.5 235 60.9
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.6e-68 263.5 199 66.3
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 3.6e-68 262.3 235 58.7
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 6.2e-68 261.5 245 56.3
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 6.2e-68 261.5 245 56.3
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 6.2e-68 261.5 196 63.8
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 6.2e-68 261.5 233 57.5
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.1e-67 260.8 174 74.1
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.8e-67 260.0 176 71.0
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 3.1e-67 259.2 233 58.4
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 3.1e-67 259.2 233 58.4
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 3.1e-67 259.2 236 58.5
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 4.0e-67 258.8 235 57.0
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 5.2e-67 258.5 234 58.1
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 8.9e-67 257.7 243 54.7
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 1.2e-66 257.3 224 59.8
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.2e-66 257.3 201 62.2
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 2.0e-66 256.5 236 58.1
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 2.6e-66 256.1 236 58.1
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 2.6e-66 256.1 236 58.1
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 4.4e-66 255.4 183 68.3
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 4.4e-66 255.4 242 55.8
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 9.8e-66 254.2 184 67.4
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 1.7e-65 253.4 182 67.0
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.7e-65 253.4 268 52.2
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 2.4e-64 249.6 174 67.2
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 2.4e-64 249.6 240 55.8
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 9.2e-64 247.7 243 55.1
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 2.7e-63 246.1 194 61.9
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 4.6e-63 245.4 237 58.2
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 1.7e-62 243.4 136 84.6
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 1.7e-62 243.4 235 56.2
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 1.5e-61 240.4 151 75.5
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 1.9e-61 240.0 145 80.0
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 3.3e-61 239.2 147 78.2
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 5.6e-61 238.4 147 77.6
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.6e-60 236.9 146 77.4
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 2.1e-60 236.5 178 63.5
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 2.8e-60 236.1 200 60.0
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.8e-60 236.1 198 58.1
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 3.6e-60 235.7 143 78.3
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.6e-60 235.7 146 77.4
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 3.6e-60 235.7 151 72.8
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 6.2e-60 235.0 155 74.8
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.8e-59 233.4 194 59.3
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.2e-58 230.7 178 67.4
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 1.5e-58 230.3 141 75.2
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.7e-57 226.9 203 57.1
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 2.9e-57 226.1 231 55.0
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 2.9e-57 226.1 230 53.0
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 4.9e-57 225.3 203 56.2
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.0e-54 217.6 160 65.6
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.1e-53 214.2 191 57.1
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 9.5e-53 211.1 241 50.2
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 2.8e-52 209.5 185 58.9
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 8.1e-52 208.0 130 75.4
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 8.4e-49 198.0 196 54.6
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 1.1e-48 197.6 192 56.2
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 3.5e-47 192.6 221 48.0
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 4.6e-47 192.2 172 60.5
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 6.6e-46 188.3 141 63.8
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 8.7e-46 188.0 186 51.6
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 2.5e-45 186.4 189 57.7
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 3.3e-45 186.0 153 56.9
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 3.3e-45 186.0 156 58.3
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 3.3e-45 186.0 182 50.5
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 9.6e-45 184.5 138 65.9
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.3e-41 174.1 139 54.7
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.1e-37 161.0 202 42.6
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 9.0e-35 151.4 146 57.5
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 9.9e-34 147.9 172 47.7
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 4.9e-33 145.6 238 41.2
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 8.7e-30 134.8 122 56.6
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 3.3e-29 132.9 166 48.8
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 3.1e-27 126.3 156 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 6.7e-22 108.6 79 63.3
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 4.5e-18 95.9 142 35.2
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 4.6e-15 85.9 160 31.2
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.3e-14 84.3 139 36.0
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 3.0e-14 83.2 129 34.9
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.5e-13 80.9 76 51.3
FAN04G3248 Fragaria x ananassa HOM05D004693 ORTHO05D005545 1.8e-11 73.9 83 45.8
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 3.1e-11 73.2 155 29.0
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 5.3e-11 72.4 83 51.8
FAN08G1603 Fragaria x ananassa HOM05D004693 ORTHO05D005545 9.0e-11 71.6 93 40.9
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.2e-10 71.2 160 31.2
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.8e-09 66.2 120 28.3
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.0e-09 65.9 84 45.2
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 8.5e-09 65.1 114 29.8
QL02p051406 Quercus lobata HOM05D004693 ORTHO05D005545 2.5e-08 63.5 88 43.2
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 2.3e-06 57.0 60 50.0


User provided reference genes

Program Settings