Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 0.0e+00 1845.9 1223 100.0
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 7.0e-309 1064.3 1235 64.4
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 5.8e-263 911.8 1251 61.5
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 2.4e-261 906.4 1249 49.5
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 3.6e-257 892.5 1246 57.5
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 4.6e-252 875.5 1247 57.7
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 1.7e-246 857.1 1242 52.9
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 3.0e-243 846.3 1287 52.8
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 3.7e-241 839.3 1269 58.3
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.9e-234 817.0 1245 54.2
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.5e-231 807.4 1243 52.3
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 2.0e-231 807.0 1280 55.2
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 2.6e-231 806.6 1252 56.3
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.5e-226 790.8 1277 50.3
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 1.3e-225 787.7 1244 54.4
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 1.3e-225 787.7 1307 53.4
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 2.8e-225 786.6 1249 55.7
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.7e-222 777.3 1281 47.8
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 4.4e-218 762.7 1250 54.5
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 3.1e-216 756.5 821 54.4
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 1.5e-215 754.2 1270 54.8
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 1.1e-213 748.0 1255 51.1
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 1.4e-213 747.7 1054 52.1
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 2.1e-212 743.8 1028 54.5
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 7.4e-210 735.3 1252 54.2
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 9.4e-205 718.4 1241 51.8
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 6.1e-204 715.7 1296 46.2
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 8.8e-203 711.8 1248 51.4
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 8.8e-203 711.8 1244 52.1
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 4.5e-199 699.5 1282 50.9
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 6.3e-193 679.1 1093 45.8
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 1.5e-189 667.9 1264 52.1
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 8.0e-188 662.1 1273 50.2
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 9.8e-186 655.2 1268 47.6
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 6.3e-185 652.5 1264 49.5
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 8.3e-185 652.1 1273 49.9
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.8e-184 651.0 1273 49.8
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 1.7e-182 644.4 1277 42.8
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.9e-181 641.0 1264 50.0
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 4.0e-179 633.3 1262 46.0
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.9e-177 627.1 1267 50.2
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 3.9e-174 616.7 1248 44.6
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 7.3e-173 612.5 1264 49.5
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 1.9e-168 597.8 1247 45.5
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 5.2e-163 579.7 1311 47.5
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 6.4e-161 572.8 1278 39.3
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 4.1e-160 570.1 1291 42.4
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 3.6e-156 557.0 1261 43.3
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 4.0e-155 553.5 1159 46.7
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 3.4e-154 550.4 1245 37.8
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 5.8e-154 549.7 1236 42.1
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 1.3e-153 548.5 1249 42.4
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 2.3e-150 537.7 1253 42.2
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 7.6e-146 522.7 1346 37.7
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 4.9e-145 520.0 1255 39.6
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.9e-144 518.1 1148 44.9
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 2.1e-143 514.6 1252 40.0
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 3.1e-139 500.7 1281 38.9
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 5.3e-139 500.0 842 44.1
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 2.0e-138 498.0 1283 40.7
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.6e-138 497.7 805 43.1
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 3.4e-138 497.3 1250 40.9
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 5.4e-136 490.0 533 53.3
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 2.1e-135 488.0 1263 45.1
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 3.0e-134 484.2 1319 38.8
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.8e-131 474.9 1294 35.2
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 9.0e-131 472.6 1336 36.4
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 7.9e-127 459.5 829 40.2
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 5.7e-125 453.4 1288 41.1
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 7.4e-125 453.0 1297 37.3
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 1.8e-123 448.4 1320 38.1
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 1.2e-122 445.7 1295 41.5
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 1.0e-121 442.6 1281 40.3
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 1.2e-119 435.6 1279 41.6
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 2.1e-119 434.9 1264 37.1
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 1.1e-117 429.1 1097 45.2
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 4.1e-115 420.6 823 37.5
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 4.5e-114 417.2 1018 39.5
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 8.5e-113 412.9 1102 44.2
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 1.9e-112 411.8 827 37.6
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.6e-111 408.7 1213 39.4
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 3.6e-111 407.5 834 39.1
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 7.9e-111 406.4 1371 34.1
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 7.9e-111 406.4 1267 35.7
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.9e-110 404.1 711 39.0
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 9.7e-109 399.4 1153 33.8
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.4e-107 394.8 1307 40.3
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 3.1e-107 394.4 738 39.0
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 5.0e-105 387.1 1268 40.5
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 6.1e-103 380.2 834 36.2
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 1.4e-102 379.0 823 36.3
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 4.4e-101 374.0 835 35.6
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 5.9e-98 363.6 1268 34.4
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 7.7e-98 363.2 781 35.9
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 1.7e-97 362.1 826 35.5
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 7.2e-96 356.7 664 39.5
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 1.6e-95 355.5 869 35.9
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 4.7e-95 354.0 670 39.0
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 8.0e-95 353.2 1240 38.7
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 2.6e-93 348.2 618 38.7
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 3.3e-93 347.8 1252 36.5
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 7.4e-93 346.7 807 35.3
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 9.7e-93 346.3 1321 36.3
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 1.7e-92 345.5 1289 40.1
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 1.7e-92 345.5 1085 34.4
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.2e-92 345.1 822 35.2
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 2.8e-92 344.7 819 35.0
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 1.1e-91 342.8 644 40.7
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 1.6e-90 339.0 786 35.2
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 1.7e-89 335.5 644 40.7
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 2.2e-89 335.1 824 34.5
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.2e-89 335.1 849 34.9
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 8.5e-89 333.2 864 34.7
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 1.9e-88 332.0 803 35.1
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 1.9e-88 332.0 803 35.1
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 2.1e-87 328.6 1086 33.8
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 6.1e-87 327.0 661 36.5
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 8.8e-86 323.2 611 38.1
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 3.4e-85 321.2 827 35.4
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.4e-83 315.8 606 37.8
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 1.8e-83 315.5 830 33.0
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 4.1e-83 314.3 1160 40.7
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 2.2e-81 308.5 1055 39.8
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.5e-80 305.8 824 33.5
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 8.0e-79 300.1 836 32.8
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.0e-78 299.7 1314 37.1
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 9.8e-77 293.1 1116 33.2
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 5.0e-73 280.8 526 37.1
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 1.5e-69 269.2 828 33.0
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 7.5e-69 266.9 934 30.7
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 8.3e-68 263.5 829 31.5
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.7e-65 255.8 797 32.5
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 2.1e-63 248.8 820 31.8
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 2.3e-62 245.4 1314 29.8
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 5.2e-54 217.6 408 37.0
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 9.8e-53 213.4 887 28.7
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 4.9e-52 211.1 701 30.7
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 6.4e-52 210.7 831 29.0
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 4.3e-48 198.0 887 30.6
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 6.2e-47 194.1 708 31.2
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 8.9e-46 190.3 719 28.8
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 7.1e-43 180.6 674 30.9
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.3e-41 176.4 819 28.1
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 3.1e-38 165.2 703 27.6
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 2.2e-36 159.1 1166 30.9
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 6.4e-36 157.5 549 32.4
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 1.1e-35 156.8 413 35.8
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 1.1e-35 156.8 705 28.5
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 5.4e-35 154.5 633 28.6
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 3.5e-34 151.8 611 27.7
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.7e-33 149.4 609 27.9
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 4.0e-22 111.7 658 26.7
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.5e-21 109.8 402 27.1
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 9.9e-21 107.1 600 26.0
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 6.7e-17 94.4 546 31.5
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 1.1e-14 87.0 1109 30.3
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 1.8e-14 86.3 517 26.5
C06p30100 Brassica napus HOM05D003962 ORTHO05D032564 8.4e-12 77.4 132 43.2
BolC6t38171H Brassica oleracea HOM05D003962 ORTHO05D032564 8.4e-12 77.4 132 43.2
BcaC08g45378 Brassica carinata HOM05D003962 ORTHO05D032564 1.6e-10 73.2 106 48.1
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 1.3e-09 70.1 120 44.2
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.3e-07 63.5 240 30.0
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.6e-07 63.2 133 31.6
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.6e-07 63.2 133 31.6


User provided reference genes

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