Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.159 Acer truncatum HOM05D006590 ORTHO05D052103 9.0e-113 410.2 201 100.0
Atru.chr1.163 Acer truncatum HOM05D006590 ORTHO05D008427 1.2e-11 74.3 206 36.9
QL09p009505 Quercus lobata HOM05D006590 ORTHO05D008427 1.7e-10 70.5 206 35.4
Ciclev10004491m.g Citrus clementina HOM05D006590 ORTHO05D008427 2.2e-10 70.1 160 38.1
Sabra15G0013100 Salix brachista HOM05D006590 ORTHO05D008427 2.2e-10 70.1 130 39.2
Haze_00189 Corylus avellana HOM05D006590 ORTHO05D008427 8.4e-10 68.2 206 33.5
Manes.06G159700 Manihot esculenta HOM05D006590 ORTHO05D008427 1.4e-09 67.4 135 39.3
Potri.015G016801 Populus trichocarpa HOM05D006590 ORTHO05D008427 2.4e-09 66.6 195 33.8
CiPaw.05G251800 Carya illinoinensis HOM05D006590 ORTHO05D008427 4.2e-09 65.9 135 37.8
Cfa016251 Carpinus fangiana HOM05D006590 ORTHO05D008427 7.1e-09 65.1 206 32.5
Gohir.D12G251400 Gossypium hirsutum HOM05D006590 ORTHO05D008427 7.1e-09 65.1 136 38.2
Potri.015G017100 Populus trichocarpa HOM05D006590 ORTHO05D008427 1.6e-08 63.9 133 38.3
Gorai.008G269500 Gossypium raimondii HOM05D006590 ORTHO05D008427 2.1e-08 63.5 136 37.5
MBI07_g07100_MAGBIO Magnolia biondii HOM05D006590 ORTHO05D008427 2.1e-08 63.5 206 32.0
Gohir.A12G250600 Gossypium hirsutum HOM05D006590 ORTHO05D008427 2.7e-08 63.2 181 34.3
Sc13g0009780 Simmondsia chinensis HOM05D006590 ORTHO05D008427 2.7e-08 63.2 208 32.2
arahy.Tifrunner.gnm1.ann1.ICGL65 Arachis hypogaea HOM05D006590 ORTHO05D008427 3.5e-08 62.8 132 37.9
Glyma.06G127700 Glycine max HOM05D006590 ORTHO05D008427 3.5e-08 62.8 132 38.6
CANSAT21G0035 Cannabis sativa HOM05D006590 ORTHO05D008427 4.6e-08 62.4 157 35.0
Rhsim03G0207800 Rhododendron simsii HOM05D006590 ORTHO05D008427 4.6e-08 62.4 133 34.6
THA.LOC104800297 Tarenaya hassleriana HOM05D006590 ORTHO05D008427 4.6e-08 62.4 135 37.8
arahy.Tifrunner.gnm1.ann1.X012TI Arachis hypogaea HOM05D006590 ORTHO05D008427 6.0e-08 62.0 132 37.9
Lj1C1015G5 Lonicera japonica HOM05D006590 ORTHO05D008427 6.0e-08 62.0 156 35.3
COL.COLO4_11262 Corchorus olitorius HOM05D006590 ORTHO05D008427 7.9e-08 61.6 208 32.2
Glyma.04G236600 Glycine max HOM05D006590 ORTHO05D008427 7.9e-08 61.6 203 33.5
Hma1.2p1_0404F.1_g145510 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 7.9e-08 61.6 123 36.6
Thecc.03G196200 Theobroma cacao HOM05D006590 ORTHO05D008427 7.9e-08 61.6 133 35.3
Ca_16698_v3 Cicer arietinum L. HOM05D006590 ORTHO05D008427 1.3e-07 60.8 203 33.5
Dinv35324 Davidia involucrata HOM05D006590 ORTHO05D008427 1.3e-07 60.8 159 35.8
Duzib205G0486 Durio zibethinus HOM05D006590 ORTHO05D008427 1.3e-07 60.8 206 32.5
Prupe.2G311400 Prunus persica HOM05D006590 ORTHO05D008427 1.3e-07 60.8 135 35.6
CSS0003993 Camellia sinensis var. sinensis HOM05D006590 ORTHO05D008427 2.3e-07 60.1 159 34.0
CSS0014515 Camellia sinensis var. sinensis HOM05D006590 ORTHO05D008427 2.3e-07 60.1 159 34.0
vmacro06540 Vaccinium macrocarpon HOM05D006590 ORTHO05D008427 2.3e-07 60.1 159 34.6
TPR.G17286 Trifolium pratense HOM05D006590 ORTHO05D008427 3.0e-07 59.7 132 37.9
Eucgr.A01466 Eucalyptus grandis HOM05D006590 ORTHO05D008427 3.9e-07 59.3 135 35.6
Phvul.009G053500 Phaseolus vulgaris HOM05D006590 ORTHO05D008427 5.1e-07 58.9 154 34.4
GSVIVG01038710001 Vitis vinifera HOM05D006590 ORTHO05D008427 5.1e-07 58.9 135 35.6
FvH4_7g31750 Fragaria vesca HOM05D006590 ORTHO05D008427 6.7e-07 58.5 135 34.8
FAN01G1498 Fragaria x ananassa HOM05D006590 ORTHO05D008427 6.7e-07 58.5 135 34.8
FAN03G2401 Fragaria x ananassa HOM05D006590 ORTHO05D008427 6.7e-07 58.5 135 34.8
FAN06G3161 Fragaria x ananassa HOM05D006590 ORTHO05D008427 6.7e-07 58.5 135 34.8
FAN06G3878 Fragaria x ananassa HOM05D006590 ORTHO05D008427 6.7e-07 58.5 135 34.8
FAN10G1373 Fragaria x ananassa HOM05D006590 ORTHO05D008427 6.7e-07 58.5 135 34.8
FAN10G2802 Fragaria x ananassa HOM05D006590 ORTHO05D008427 6.7e-07 58.5 135 34.8
Psat5g078080 Pisum sativum HOM05D006590 ORTHO05D008427 6.7e-07 58.5 154 35.1
Cpa.g.sc3.70 Carica papaya HOM05D006590 ORTHO05D008427 8.7e-07 58.2 118 36.4
MD01G1219800 Malus domestica HOM05D006590 ORTHO05D008427 8.7e-07 58.2 157 33.8
PGR042G1173 Punica granatum HOM05D006590 ORTHO05D008427 8.7e-07 58.2 135 34.8
TWI14G0328 Tripterygium wilfordii HOM05D006590 ORTHO05D008427 1.5e-06 57.4 208 32.7
Aqoxy5G04233 Aquilegia oxysepala HOM05D006590 ORTHO05D008427 1.9e-06 57.0 206 32.0
Hma1.2p1_0404F.1_g145500 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 1.9e-06 57.0 133 35.3
Carub.0008s1361 Capsella rubella HOM05D006590 ORTHO05D008427 2.5e-06 56.6 134 35.1
Sp6g15580 Schrenkiella parvula HOM05D006590 ORTHO05D008427 3.3e-06 56.2 132 36.4


User provided reference genes

Program Settings