Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 2.2e-126 455.7 231 100.0
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 3.0e-67 259.2 237 63.3
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 2.3e-64 249.6 258 57.0
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 3.1e-64 249.2 245 62.4
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 1.1e-61 240.7 255 59.2
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 1.9e-61 240.0 236 62.3
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 2.4e-61 239.6 236 63.1
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 1.0e-59 234.2 264 58.0
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 3.9e-59 232.3 264 58.3
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 1.1e-58 230.7 249 59.4
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 1.5e-58 230.3 239 59.8
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 1.5e-58 230.3 260 55.8
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 9.5e-58 227.6 248 57.7
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 9.5e-58 227.6 257 58.0
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 4.7e-57 225.3 260 55.4
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 1.2e-55 220.7 239 58.6
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 9.9e-55 217.6 252 56.0
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 1.4e-53 213.8 255 52.2
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 9.2e-53 211.1 241 56.0
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 2.7e-52 209.5 245 55.1
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 7.8e-52 208.0 234 57.3
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 8.6e-51 204.5 243 53.9
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 8.6e-51 204.5 253 54.5
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 1.1e-50 204.1 236 54.2
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 2.5e-50 203.0 239 54.8
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 3.6e-49 199.1 260 50.8
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 4.7e-49 198.7 253 53.0
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 1.1e-48 197.6 235 54.9
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 5.2e-48 195.3 233 51.5
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 8.9e-48 194.5 262 51.9
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 1.5e-47 193.7 248 52.0
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 5.8e-47 191.8 209 55.5
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 5.8e-47 191.8 242 55.0
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 1.3e-46 190.7 262 51.9
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.3e-46 190.7 262 50.8
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.7e-46 190.3 236 54.2
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 2.2e-46 189.9 242 54.1
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.2e-44 184.1 261 49.8
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 1.2e-44 184.1 243 52.3
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 1.6e-44 183.7 245 51.4
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 1.3e-43 180.6 245 53.1
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.7e-43 180.3 180 58.9
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 2.3e-43 179.9 243 49.4
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 5.1e-43 178.7 254 52.0
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 6.6e-43 178.3 258 51.2
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 8.7e-43 177.9 189 58.7
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 1.9e-42 176.8 242 50.0
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 2.5e-42 176.4 236 50.0
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 7.3e-42 174.9 241 53.1
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 7.3e-42 174.9 247 51.0
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 6.2e-41 171.8 248 49.2
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 8.1e-41 171.4 241 53.5
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 1.8e-40 170.2 250 48.4
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 5.3e-40 168.7 243 51.9
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 4.4e-39 165.6 234 47.0
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 7.6e-39 164.9 234 47.0
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 2.9e-38 162.9 231 48.5
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 3.8e-38 162.5 234 50.0
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 4.9e-38 162.2 234 46.6
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 6.4e-38 161.8 235 43.4
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 7.1e-37 158.3 248 47.6
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 7.1e-37 158.3 246 43.5
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 1.2e-36 157.5 232 47.0
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 1.2e-36 157.5 246 43.1
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 1.2e-36 157.5 246 43.1
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.2e-36 157.5 233 49.4
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 2.7e-36 156.4 245 44.5
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 2.7e-36 156.4 245 44.5
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 2.7e-36 156.4 239 46.9
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 7.8e-36 154.8 250 45.6
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.0e-35 154.5 232 49.1
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.3e-35 154.1 280 43.6
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 6.6e-35 151.8 235 46.0
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 8.7e-35 151.4 250 44.4
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 1.9e-34 150.2 238 44.5
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 4.3e-34 149.1 262 42.0
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 5.6e-34 148.7 225 45.8
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 1.3e-33 147.5 239 43.9
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 1.3e-33 147.5 239 43.9
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 1.3e-33 147.5 239 43.9
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.3e-33 147.5 247 42.1
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 1.6e-33 147.1 259 42.9
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.6e-33 147.1 245 41.6
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 4.8e-33 145.6 242 44.6
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 6.2e-33 145.2 242 44.6
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 6.2e-33 145.2 241 46.1
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 6.2e-33 145.2 243 45.3
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 8.1e-33 144.8 237 46.4
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.4e-32 144.1 253 42.7
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 1.4e-32 144.1 231 46.3
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 1.8e-32 143.7 238 42.0
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 2.4e-32 143.3 258 39.5
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 2.4e-32 143.3 249 44.2
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 3.1e-32 142.9 247 44.9
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 3.1e-32 142.9 231 46.8
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 3.1e-32 142.9 179 56.4
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 5.3e-32 142.1 244 40.2
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 6.9e-32 141.7 240 42.1
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 6.9e-32 141.7 245 40.4
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 6.9e-32 141.7 239 46.4
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 6.9e-32 141.7 234 46.2
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 9.0e-32 141.4 243 42.4
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 9.0e-32 141.4 240 40.8
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 9.0e-32 141.4 240 40.8
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.2e-31 141.0 255 42.7
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.2e-31 141.0 230 43.9
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 2.6e-31 139.8 255 38.8
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 5.8e-31 138.7 235 42.6
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 7.6e-31 138.3 247 42.9
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.7e-30 137.1 255 41.6
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 1.4e-29 134.0 246 40.7
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 3.2e-29 132.9 231 42.0
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 4.2e-29 132.5 244 39.8
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 4.2e-29 132.5 245 42.4
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 9.3e-29 131.3 248 40.7
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.6e-28 130.6 245 40.4
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 3.5e-28 129.4 236 41.9
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 2.3e-27 126.7 266 38.7
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 2.3e-27 126.7 246 39.8
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 3.0e-27 126.3 187 45.5
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 3.9e-27 125.9 245 43.3
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 1.5e-26 124.0 234 40.6
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 7.4e-26 121.7 246 41.5
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 1.6e-25 120.6 234 41.0
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.6e-25 120.6 222 38.3
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 4.8e-25 119.0 170 48.2
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 4.8e-25 119.0 235 40.0
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 6.2e-25 118.6 235 40.9
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 2.4e-24 116.7 229 41.0
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 6.9e-24 115.2 233 39.5
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.5e-23 114.0 233 39.5
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 7.6e-23 111.7 136 53.7
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 1.7e-22 110.5 240 37.9
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 3.8e-22 109.4 243 39.5
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 6.4e-22 108.6 230 37.4
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 8.4e-22 108.2 251 35.5
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 5.5e-21 105.5 176 42.6
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 9.3e-21 104.8 243 39.9
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.6e-20 104.0 245 36.3
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 2.1e-20 103.6 138 48.6
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 2.7e-20 103.2 183 42.6
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 3.5e-20 102.8 166 44.6
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 6.0e-20 102.1 173 42.8
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 7.9e-20 101.7 244 35.7
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 1.3e-19 100.9 231 35.9
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 5.6e-18 95.5 242 35.1
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 7.4e-18 95.1 236 39.0
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 9.6e-18 94.7 133 46.6
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 8.2e-17 91.7 145 44.1
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 2.4e-16 90.1 222 38.7
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 2.0e-15 87.0 182 36.8
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 4.9e-14 82.4 195 35.9
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 3.2e-13 79.7 146 41.1
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 2.7e-12 76.6 132 43.9
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 1.0e-11 74.7 77 59.7
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 3.9e-11 72.8 192 34.4
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 7.4e-10 68.6 162 35.8
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 1.3e-09 67.8 79 48.1
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 1.4e-08 64.3 147 34.0
Os12g0127800 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 6.9e-08 62.0 84 46.4
unitig_744.g24165 Utricularia gibba HOM05D004369 ORTHO05D004907 5.9e-07 58.9 105 41.0


User provided reference genes

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