Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 9.6e-159 563.5 302 100.0
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 1.3e-136 490.0 302 86.1
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 4.8e-134 481.5 302 87.1
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.8e-133 479.6 302 84.4
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.8e-133 479.6 302 84.4
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 5.3e-133 478.0 302 84.1
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 1.2e-132 476.9 302 83.4
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 5.0e-131 471.5 303 83.2
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 2.5e-130 469.2 302 83.8
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 5.5e-130 468.0 302 84.1
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.6e-129 466.5 302 83.8
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 3.5e-129 465.3 303 82.2
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 4.6e-129 464.9 302 82.1
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 7.9e-129 464.2 302 82.1
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 1.3e-128 463.4 306 81.4
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 1.3e-126 456.8 302 80.8
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 2.8e-126 455.7 302 81.1
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 1.1e-125 453.8 298 80.5
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 4.1e-125 451.8 297 80.5
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 2.0e-124 449.5 302 79.5
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 5.9e-124 448.0 301 79.1
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 3.8e-123 445.3 302 79.1
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 5.0e-123 444.9 290 80.3
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 6.5e-123 444.5 302 80.1
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 1.1e-122 443.7 302 79.8
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 3.2e-122 442.2 302 78.1
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 4.2e-122 441.8 302 78.1
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 9.4e-122 440.7 302 78.1
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 2.1e-121 439.5 310 77.1
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 2.1e-121 439.5 310 77.1
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 3.6e-121 438.7 299 77.3
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 4.6e-121 438.3 304 78.3
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 6.1e-121 438.0 302 76.8
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 7.9e-121 437.6 304 78.0
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 7.9e-121 437.6 303 77.6
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 7.9e-121 437.6 302 77.8
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 1.8e-120 436.4 306 75.5
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 1.8e-120 436.4 306 75.5
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 3.0e-120 435.6 302 76.5
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 3.0e-120 435.6 285 81.1
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 5.1e-120 434.9 266 86.1
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 5.1e-120 434.9 306 75.2
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 6.7e-120 434.5 265 86.4
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 8.8e-120 434.1 302 76.8
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 1.5e-119 433.3 302 76.2
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 1.5e-119 433.3 312 75.0
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.0e-119 433.0 267 85.8
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 2.5e-119 432.6 297 78.5
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 2.5e-119 432.6 290 78.6
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 3.3e-119 432.2 302 77.8
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 4.3e-119 431.8 302 76.2
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 7.4e-119 431.0 293 78.2
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 9.7e-119 430.6 302 76.5
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 9.7e-119 430.6 306 75.8
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 9.7e-119 430.6 302 76.2
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 9.7e-119 430.6 265 85.7
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 9.7e-119 430.6 311 75.9
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 1.3e-118 430.3 302 76.2
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 2.8e-118 429.1 301 75.1
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 3.7e-118 428.7 301 77.1
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 4.8e-118 428.3 282 78.7
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 1.1e-117 427.2 282 79.4
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 1.8e-117 426.4 292 77.4
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 1.8e-117 426.4 299 76.9
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 3.1e-117 425.6 282 79.4
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 4.1e-117 425.2 301 77.4
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 9.1e-117 424.1 304 75.0
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 1.2e-116 423.7 283 78.4
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 2.0e-116 422.9 292 76.7
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 2.0e-116 422.9 302 74.2
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 2.0e-116 422.9 302 76.5
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 2.6e-116 422.5 316 74.4
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 3.4e-116 422.2 301 74.1
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 4.5e-116 421.8 282 78.7
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 7.7e-116 421.0 291 77.3
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 1.0e-115 420.6 302 77.2
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.0e-115 420.6 302 74.5
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 1.3e-115 420.2 302 72.8
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 3.8e-115 418.7 286 78.3
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 5.0e-115 418.3 293 76.5
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 5.0e-115 418.3 302 75.2
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 6.5e-115 417.9 331 69.8
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 1.1e-114 417.2 282 77.0
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 2.5e-114 416.0 293 75.8
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 3.2e-114 415.6 293 75.8
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 4.2e-114 415.2 303 74.9
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 2.7e-113 412.5 351 66.4
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 2.7e-113 412.5 318 70.8
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 6.1e-113 411.4 288 75.7
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 7.9e-113 411.0 293 74.4
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.3e-112 409.5 266 83.5
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 1.1e-111 407.1 281 76.5
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 1.5e-111 406.8 282 75.9
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 4.4e-111 405.2 281 76.2
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 1.3e-110 403.7 329 68.7
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 1.7e-110 403.3 302 72.5
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 2.2e-110 402.9 281 76.2
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 3.7e-110 402.1 284 74.6
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 4.8e-110 401.7 288 73.6
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 6.3e-110 401.4 284 75.7
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 8.2e-110 401.0 284 75.7
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 1.4e-109 400.2 289 74.0
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.4e-109 400.2 289 74.0
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 3.1e-109 399.1 292 72.9
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 5.3e-109 398.3 288 72.9
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 7.0e-109 397.9 284 77.8
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 7.0e-109 397.9 272 76.8
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.2e-108 397.1 289 73.7
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.2e-108 397.1 265 81.9
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 5.9e-108 394.8 285 74.4
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 2.9e-107 392.5 288 71.2
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 5.5e-106 388.3 280 71.4
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 4.7e-105 385.2 297 71.7
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.5e-103 380.2 300 70.0
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 2.0e-103 379.8 278 72.3
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 3.3e-103 379.0 233 84.5
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 5.7e-103 378.3 302 69.5
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 5.7e-103 378.3 299 67.6
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 9.7e-103 377.5 306 68.6
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 1.7e-102 376.7 302 68.9
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 3.7e-102 375.6 260 76.9
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 8.2e-102 374.4 346 62.1
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 7.7e-100 367.9 278 69.4
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 5.0e-99 365.2 310 65.8
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 2.6e-95 352.8 279 67.7
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 4.8e-94 348.6 293 64.2
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 1.1e-93 347.4 283 62.5
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 1.4e-93 347.1 284 64.8
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 4.5e-92 342.0 212 84.9
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 1.1e-85 320.9 223 77.6
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 2.7e-84 316.2 280 57.1
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 6.6e-83 311.6 286 63.3
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 1.2e-81 307.4 298 59.1
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 2.9e-78 296.2 267 62.5
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 6.6e-75 285.0 278 54.7
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 1.0e-72 277.7 220 68.6
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 8.3e-70 268.1 163 82.8
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 1.4e-69 267.3 252 60.3
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 1.2e-68 264.2 203 67.0
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 3.9e-67 259.2 201 74.1
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 7.3e-66 255.0 291 51.5
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 7.3e-58 228.4 244 47.5
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.2e-57 227.6 163 74.2
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 5.1e-43 179.1 178 57.3
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 5.1e-43 179.1 178 57.3
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 1.5e-42 177.6 169 62.7
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 4.4e-39 166.0 107 76.6
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 4.4e-39 166.0 107 76.6
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 1.0e-35 154.8 141 63.8
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 3.6e-33 146.4 96 76.0
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 2.0e-31 140.6 81 86.4
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 1.3e-27 127.9 94 70.2
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 3.8e-22 109.8 97 62.9
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 3.0e-19 100.1 83 66.3
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 3.9e-19 99.8 85 57.6
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 9.0e-16 88.6 58 79.3
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.2e-15 88.2 52 88.5
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 1.7e-14 84.3 82 53.7
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 5.0e-14 82.8 121 42.1
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 1.9e-13 80.9 77 53.2
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.9e-13 80.9 70 68.6
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 9.3e-13 78.6 68 61.8
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 3.5e-12 76.6 68 61.8
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 3.5e-12 76.6 82 52.4
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 7.9e-12 75.5 90 46.7
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 3.0e-11 73.6 60 58.3
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 1.8e-08 64.3 40 75.0
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 1.2e-07 61.6 39 74.4
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 1.2e-07 61.6 39 74.4
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 3.4e-07 60.1 92 41.3
BcaB01g01562 Brassica carinata HOM05D004217 ORTHO05D091974 8.5e-06 55.5 41 68.3


User provided reference genes

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