Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 2.4e-56 221.9 105 100.0
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 2.6e-55 218.4 105 98.1
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 3.6e-36 154.8 104 75.0
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 3.7e-33 144.8 105 67.6
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 1.1e-32 143.3 105 69.5
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 2.4e-32 142.1 105 65.7
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 3.1e-32 141.7 105 63.8
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 5.3e-32 141.0 107 64.5
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 9.1e-32 140.2 105 66.7
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 1.6e-31 139.4 105 66.7
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 2.0e-31 139.0 103 63.1
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 4.5e-31 137.9 105 61.9
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 5.9e-31 137.5 105 61.9
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 5.9e-31 137.5 105 61.9
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 1.3e-30 136.3 103 62.1
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 1.3e-30 136.3 102 61.8
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 2.2e-30 135.6 110 61.8
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 2.9e-30 135.2 105 61.0
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 2.9e-30 135.2 103 62.1
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 2.9e-30 135.2 103 62.1
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 3.8e-30 134.8 106 63.2
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 8.5e-30 133.7 96 66.7
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 1.5e-29 132.9 104 57.7
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 1.9e-29 132.5 111 58.6
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 3.2e-29 131.7 104 59.6
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 5.5e-29 131.0 103 60.2
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 5.5e-29 131.0 95 67.4
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 5.5e-29 131.0 105 64.8
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 9.4e-29 130.2 105 62.9
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 1.6e-28 129.4 104 58.7
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 1.6e-28 129.4 104 58.7
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 2.1e-28 129.0 79 70.9
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 2.1e-28 129.0 97 69.1
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 4.7e-28 127.9 104 57.7
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 4.7e-28 127.9 105 57.1
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 4.7e-28 127.9 102 59.8
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 4.7e-28 127.9 104 55.8
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 4.7e-28 127.9 105 58.1
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 6.1e-28 127.5 95 64.2
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 8.0e-28 127.1 104 55.8
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 8.0e-28 127.1 102 59.8
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 1.0e-27 126.7 67 82.1
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 1.4e-27 126.3 105 56.2
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 1.8e-27 125.9 102 58.8
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 2.3e-27 125.6 104 58.7
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 2.3e-27 125.6 105 60.0
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 3.0e-27 125.2 97 59.8
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 4.0e-27 124.8 99 61.6
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 4.0e-27 124.8 103 60.2
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 4.0e-27 124.8 75 74.7
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 4.0e-27 124.8 95 62.1
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 5.2e-27 124.4 107 57.0
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 5.2e-27 124.4 107 59.8
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 8.8e-27 123.6 88 64.8
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 1.1e-26 123.2 105 57.1
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 1.1e-26 123.2 109 58.7
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 2.6e-26 122.1 99 59.6
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 2.6e-26 122.1 108 56.5
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 3.3e-26 121.7 100 57.0
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 4.4e-26 121.3 91 63.7
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 7.5e-26 120.6 95 58.9
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 1.7e-25 119.4 97 56.7
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 2.8e-25 118.6 100 57.0
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.8e-25 118.6 100 57.0
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 4.8e-25 117.9 100 56.0
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 4.8e-25 117.9 77 67.5
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 4.8e-25 117.9 101 55.4
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 1.4e-24 116.3 74 67.6
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 1.4e-24 116.3 105 54.3
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 1.4e-24 116.3 108 53.7
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 1.4e-24 116.3 98 57.1
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.8e-24 115.9 100 56.0
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 5.3e-24 114.4 82 58.5
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 9.1e-24 113.6 104 55.8
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 2.0e-23 112.5 66 69.7
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 2.0e-23 112.5 66 69.7
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 2.0e-23 112.5 66 69.7
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 2.7e-23 112.1 101 50.5
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 2.7e-23 112.1 68 66.2
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 3.5e-23 111.7 93 57.0
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 4.5e-23 111.3 66 68.2
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 1.0e-22 110.2 65 67.7
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 1.3e-22 109.8 69 65.2
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 1.3e-22 109.8 99 51.5
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 1.3e-22 109.8 107 49.5
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 2.2e-22 109.0 67 68.7
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 2.9e-22 108.6 94 55.3
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 2.9e-22 108.6 66 66.7
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 2.9e-22 108.6 66 66.7
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 2.9e-22 108.6 66 66.7
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 2.9e-22 108.6 66 66.7
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 2.9e-22 108.6 66 66.7
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 2.9e-22 108.6 66 66.7
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 1.5e-21 106.3 65 64.6
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 4.0e-19 98.2 97 50.5
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 7.5e-18 94.0 96 51.0
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 8.3e-17 90.5 64 56.2
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 1.1e-16 90.1 95 49.5
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 2.0e-15 85.9 52 67.3
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 1.0e-14 83.6 95 43.2
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 4.7e-12 74.7 59 61.0
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 6.8e-11 70.9 87 46.0
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 1.2e-10 70.1 80 48.8
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 4.4e-10 68.2 71 47.9
Medtr8g040530 Medicago truncatula HOM05D005847 ORTHO05D007143 5.9e-07 57.8 68 47.1
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 7.7e-07 57.4 80 43.8
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 5.0e-06 54.7 66 34.8


User provided reference genes

Program Settings