Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.1445 Acer truncatum HOM05D003466 ORTHO05D004102 2.2e-67 258.8 133 100.0
Atru.chr7.542 Acer truncatum HOM05D003466 ORTHO05D004102 3.7e-38 161.8 94 88.3
Lalb_Chr12g0205661 Lupinus albus HOM05D003466 ORTHO05D004102 6.3e-38 161.0 93 89.2
FAN18G1357 Fragaria x ananassa HOM05D003466 ORTHO05D004102 5.3e-37 157.9 132 67.4
MELO3C008863.2 Cucumis melo HOM05D003466 ORTHO05D004102 7.0e-37 157.5 97 81.4
CsaV3_4G031590 Cucumis sativus L. HOM05D003466 ORTHO05D004102 7.0e-37 157.5 97 81.4
Peaxi162Scf00071g00424 Petunia axillaris HOM05D003466 ORTHO05D004102 2.0e-36 156.0 94 84.0
Sed0012489 Sechium edule HOM05D003466 ORTHO05D004102 2.0e-36 156.0 97 80.4
MD01G1001200 Malus domestica HOM05D003466 ORTHO05D004102 4.5e-36 154.8 97 81.4
ClCG04G004740 Citrullus lanatus HOM05D003466 ORTHO05D004102 5.9e-36 154.5 97 80.4
FvH4_5g26300 Fragaria vesca HOM05D003466 ORTHO05D004102 5.9e-36 154.5 97 81.4
FAN13G2307 Fragaria x ananassa HOM05D003466 ORTHO05D004102 5.9e-36 154.5 97 81.4
Hma1.2p1_0106F.1_g051170 Hydrangea macrophylla HOM05D003466 ORTHO05D004102 1.3e-35 153.3 93 81.7
Sed0007742 Sechium edule HOM05D003466 ORTHO05D004102 1.7e-35 152.9 97 79.4
Peaxi162Scf00673g00432 Petunia axillaris HOM05D003466 ORTHO05D004102 2.2e-35 152.5 94 80.9
unitig_8.g3898 Utricularia gibba HOM05D003466 ORTHO05D004102 3.8e-35 151.8 94 81.9
FAN27G0165 Fragaria x ananassa HOM05D003466 ORTHO05D004102 5.0e-35 151.4 97 80.4
RcHm_v2.0_Chr2g0119581 Rosa chinensis HOM05D003466 ORTHO05D004102 5.0e-35 151.4 97 80.4
CDE06G0321 Ceratophyllum demersum HOM05D003466 ORTHO05D004102 6.5e-35 151.0 97 78.4
TWI34G0391 Tripterygium wilfordii HOM05D003466 ORTHO05D004102 1.1e-34 150.2 97 76.3
Lj4g0028177 Lotus japonicus HOM05D003466 ORTHO05D004102 5.5e-34 147.9 94 81.9
MSTRG.8394 Avicennia marina HOM05D003466 ORTHO05D004102 1.2e-33 146.7 99 77.8
Aqoxy1G00514 Aquilegia oxysepala HOM05D003466 ORTHO05D004102 1.6e-33 146.4 93 79.6
RcHm_v2.0_Chr7g0222731 Rosa chinensis HOM05D003466 ORTHO05D004102 3.6e-33 145.2 97 78.4
THA.LOC104802883 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 3.6e-33 145.2 91 79.1
Lsat_1_v5_gn_1_55421 Lactuca sativa HOM05D003466 ORTHO05D004102 4.0e-32 141.7 93 77.4
THA.LOC104820792 Tarenaya hassleriana HOM05D003466 ORTHO05D004102 8.8e-32 140.6 94 75.5
Zm00001eb196610 Zea mays HOM05D003466 ORTHO05D004102 1.2e-31 140.2 94 77.7
Lalb_Chr07g0186841 Lupinus albus HOM05D003466 ORTHO05D004102 6.3e-30 134.4 93 75.3
unitig_22.g5474 Utricularia gibba HOM05D003466 ORTHO05D004102 8.3e-30 134.0 94 73.4
Os02g0280100 Oryza sativa ssp. japonica HOM05D003466 ORTHO05D004102 1.4e-29 133.3 94 74.5
Sp6g26370 Schrenkiella parvula HOM05D003466 ORTHO05D004102 3.1e-29 132.1 92 73.9
Aa31LG11G11660 Aethionema arabicum HOM05D003466 ORTHO05D004102 4.1e-29 131.7 92 72.8
AL6G29010 Arabidopsis lyrata HOM05D003466 ORTHO05D004102 4.1e-29 131.7 92 72.8
DCAR_004345 Daucus carota HOM05D003466 ORTHO05D004102 4.1e-29 131.7 94 72.3
BcaB08g36728 Brassica carinata HOM05D003466 ORTHO05D004102 7.0e-29 131.0 92 71.7
AT4G08580 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 9.1e-29 130.6 92 71.7
AT5G17900 Arabidopsis thaliana HOM05D003466 ORTHO05D004102 1.6e-28 129.8 92 71.7
BcaB01g05163 Brassica carinata HOM05D003466 ORTHO05D004102 1.6e-28 129.8 92 70.7
A03p08540 Brassica napus HOM05D003466 ORTHO05D004102 1.6e-28 129.8 92 70.7
BolC3t13485H Brassica oleracea HOM05D003466 ORTHO05D004102 1.6e-28 129.8 92 70.7
CARHR195220 Cardamine hirsuta HOM05D003466 ORTHO05D004102 2.0e-28 129.4 92 71.7
BcaB01g04922 Brassica carinata HOM05D003466 ORTHO05D004102 2.7e-28 129.0 92 69.6
LjContig00357g0023779 Lotus japonicus HOM05D003466 ORTHO05D004102 2.7e-28 129.0 93 74.2
Carub.0006s1611 Capsella rubella HOM05D003466 ORTHO05D004102 3.5e-28 128.6 92 72.8
BcaC04g18745 Brassica carinata HOM05D003466 ORTHO05D004102 4.5e-28 128.3 92 71.7
A10p21590 Brassica napus HOM05D003466 ORTHO05D004102 4.5e-28 128.3 92 71.7
C09p59160 Brassica napus HOM05D003466 ORTHO05D004102 4.5e-28 128.3 92 71.7
BolC9t58759H Brassica oleracea HOM05D003466 ORTHO05D004102 4.5e-28 128.3 92 71.7
BraA10t44221Z Brassica rapa HOM05D003466 ORTHO05D004102 4.5e-28 128.3 92 71.7
Gohir.A11G229400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 5.9e-28 127.9 97 70.1
Gohir.D11G241400 Gossypium hirsutum HOM05D003466 ORTHO05D004102 5.9e-28 127.9 97 70.1
Gorai.007G255500 Gossypium raimondii HOM05D003466 ORTHO05D004102 5.9e-28 127.9 97 70.1
Nitab4.5_0005883g0020 Nicotiana tabacum HOM05D003466 ORTHO05D004102 5.9e-28 127.9 94 69.1
C03p09970 Brassica napus HOM05D003466 ORTHO05D004102 7.7e-28 127.5 92 69.6
BraA03t10180Z Brassica rapa HOM05D003466 ORTHO05D004102 7.7e-28 127.5 92 69.6
Thhalv10013587m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 1.7e-27 126.3 92 69.6
Sabra19G0050200 Salix brachista HOM05D003466 ORTHO05D004102 2.2e-27 125.9 97 68.0
CANSAT25G0815 Cannabis sativa HOM05D003466 ORTHO05D004102 8.5e-27 124.0 97 67.0
CANSAT80G2535 Cannabis sativa HOM05D003466 ORTHO05D004102 8.5e-27 124.0 97 67.0
SGA_v2.0_scaffold44G16596 Striga asiatica HOM05D003466 ORTHO05D004102 2.5e-26 122.5 94 66.0
Actinidia38929 Actinidia chinensis HOM05D003466 ORTHO05D004102 9.4e-26 120.6 97 67.0
BraA07t29363Z Brassica rapa HOM05D003466 ORTHO05D004102 2.1e-25 119.4 125 54.4
Cpa.g.sc2.346 Carica papaya HOM05D003466 ORTHO05D004102 3.6e-25 118.6 99 66.7
A07p16360 Brassica napus HOM05D003466 ORTHO05D004102 6.1e-25 117.9 125 53.6
Glyma.08G108300 Glycine max HOM05D003466 ORTHO05D004102 8.0e-25 117.5 97 64.9
CiPaw.15G127600 Carya illinoinensis HOM05D003466 ORTHO05D004102 1.0e-24 117.1 94 67.0
QL06p022006 Quercus lobata HOM05D003466 ORTHO05D004102 1.0e-24 117.1 97 66.0
Glyma.05G151500 Glycine max HOM05D003466 ORTHO05D004102 1.8e-24 116.3 97 64.9
MBI14_g30653_MAGBIO Magnolia biondii HOM05D003466 ORTHO05D004102 1.8e-24 116.3 94 66.0
Lj1C1073T4 Lonicera japonica HOM05D003466 ORTHO05D004102 2.3e-24 115.9 93 67.7
SalBow7G4471 Salvia bowleyana HOM05D003466 ORTHO05D004102 3.0e-24 115.5 97 63.9
VMungo0251G3008 Vigna mungo HOM05D003466 ORTHO05D004102 4.0e-24 115.2 97 63.9
Eucgr.E01598 Eucalyptus grandis HOM05D003466 ORTHO05D004102 5.2e-24 114.8 94 66.0
Phvul.003G051500 Phaseolus vulgaris HOM05D003466 ORTHO05D004102 5.2e-24 114.8 99 63.6
Dinv25045 Davidia involucrata HOM05D003466 ORTHO05D004102 2.0e-23 112.8 94 66.0
Manes.09G136800 Manihot esculenta HOM05D003466 ORTHO05D004102 2.0e-23 112.8 97 63.9
Duzib128G1823 Durio zibethinus HOM05D003466 ORTHO05D004102 2.6e-23 112.5 94 62.8
Eucgr.J03113 Eucalyptus grandis HOM05D003466 ORTHO05D004102 3.4e-23 112.1 94 66.0
MD15G1341800 Malus domestica HOM05D003466 ORTHO05D004102 3.4e-23 112.1 97 62.9
Thecc.05G242600 Theobroma cacao HOM05D003466 ORTHO05D004102 4.4e-23 111.7 97 61.9
arahy.Tifrunner.gnm1.ann1.WPUK1Z Arachis hypogaea HOM05D003466 ORTHO05D004102 5.7e-23 111.3 93 67.7
BcaB03g14395 Brassica carinata HOM05D003466 ORTHO05D004102 5.7e-23 111.3 96 62.5
BcaB08g34851 Brassica carinata HOM05D003466 ORTHO05D004102 5.7e-23 111.3 95 63.2
C07p24050 Brassica napus HOM05D003466 ORTHO05D004102 5.7e-23 111.3 96 62.5
BolC7t42929H Brassica oleracea HOM05D003466 ORTHO05D004102 5.7e-23 111.3 96 62.5
Ciclev10020229m.g Citrus clementina HOM05D003466 ORTHO05D004102 5.7e-23 111.3 96 64.6
HanXRQChr11g0348041 Helianthus annuus HOM05D003466 ORTHO05D004102 5.7e-23 111.3 93 65.6
Psat7g075240 Pisum sativum HOM05D003466 ORTHO05D004102 5.7e-23 111.3 97 62.9
BraA01t03144Z Brassica rapa HOM05D003466 ORTHO05D004102 7.5e-23 110.9 91 63.7
Haze_21188 Corylus avellana HOM05D003466 ORTHO05D004102 7.5e-23 110.9 97 63.9
FAN01G2678 Fragaria x ananassa HOM05D003466 ORTHO05D004102 9.8e-23 110.5 77 75.3
Ca_17998_v3 Cicer arietinum L. HOM05D003466 ORTHO05D004102 1.3e-22 110.2 97 62.9
Duzib106G0204 Durio zibethinus HOM05D003466 ORTHO05D004102 1.7e-22 109.8 97 59.8
TPR.G11896 Trifolium pratense HOM05D003466 ORTHO05D004102 1.7e-22 109.8 94 64.9
Potri.013G065600 Populus trichocarpa HOM05D003466 ORTHO05D004102 2.2e-22 109.4 93 64.5
Hund15775 Selenicereus undatus HOM05D003466 ORTHO05D004102 2.8e-22 109.0 97 61.9
MSTRG.150 Avicennia marina HOM05D003466 ORTHO05D004102 3.7e-22 108.6 93 65.6
FAN15G1350 Fragaria x ananassa HOM05D003466 ORTHO05D004102 3.7e-22 108.6 97 62.9
Nn1g06321 Nelumbo nucifera HOM05D003466 ORTHO05D004102 3.7e-22 108.6 97 62.9
CSS0012966 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 4.8e-22 108.2 97 61.9
CSS0029529 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 4.8e-22 108.2 97 61.9
CSS0032791 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 4.8e-22 108.2 97 61.9
CSS0047344 Camellia sinensis var. sinensis HOM05D003466 ORTHO05D004102 4.8e-22 108.2 97 61.9
Rhsim09G0189500 Rhododendron simsii HOM05D003466 ORTHO05D004102 4.8e-22 108.2 97 61.9
arahy.Tifrunner.gnm1.ann1.GMJ520 Arachis hypogaea HOM05D003466 ORTHO05D004102 6.3e-22 107.8 92 65.2
Nn1g00582 Nelumbo nucifera HOM05D003466 ORTHO05D004102 6.3e-22 107.8 94 63.8
Sp3g32640 Schrenkiella parvula HOM05D003466 ORTHO05D004102 8.3e-22 107.5 90 64.4
Haze_22082 Corylus avellana HOM05D003466 ORTHO05D004102 1.1e-21 107.1 94 63.8
Lj1C1073T5 Lonicera japonica HOM05D003466 ORTHO05D004102 1.4e-21 106.7 91 65.9
Nitab4.5_0000841g0090 Nicotiana tabacum HOM05D003466 ORTHO05D004102 1.8e-21 106.3 98 67.3
QL04p079149 Quercus lobata HOM05D003466 ORTHO05D004102 2.4e-21 105.9 97 59.8
Dinv05554 Davidia involucrata HOM05D003466 ORTHO05D004102 3.1e-21 105.5 94 62.8
Dinv13777 Davidia involucrata HOM05D003466 ORTHO05D004102 3.1e-21 105.5 94 62.8
vmacro09137 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 3.1e-21 105.5 98 61.2
PGR142G0405 Punica granatum HOM05D003466 ORTHO05D004102 4.1e-21 105.1 94 63.8
Ah.12g064750 Amaranthus hybridus HOM05D003466 ORTHO05D004102 5.4e-21 104.8 97 59.8
Potri.019G039900 Populus trichocarpa HOM05D003466 ORTHO05D004102 5.4e-21 104.8 93 61.3
Sabra15G0065800 Salix brachista HOM05D003466 ORTHO05D004102 5.4e-21 104.8 97 58.8
CBR_g12232 Chara braunii HOM05D003466 ORTHO05D004102 7.0e-21 104.4 87 63.2
Medtr8g083140 Medicago truncatula HOM05D003466 ORTHO05D004102 9.1e-21 104.0 97 58.8
Migut.F01214 Erythranthe guttata HOM05D003466 ORTHO05D004102 1.2e-20 103.6 94 59.6
TAR623G0841 Trochodendron aralioides HOM05D003466 ORTHO05D004102 1.2e-20 103.6 94 61.7
ATR0697G059 Amborella trichopoda HOM05D003466 ORTHO05D004102 2.0e-20 102.8 93 61.3
vmacro10385 Vaccinium macrocarpon HOM05D003466 ORTHO05D004102 2.7e-20 102.4 97 58.8
HanXRQChr01g0026931 Helianthus annuus HOM05D003466 ORTHO05D004102 3.5e-20 102.1 93 60.2
ECA248G3292 Erigeron canadensis HOM05D003466 ORTHO05D004102 5.9e-20 101.3 94 59.6
SEGI_04842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 1.0e-19 100.5 97 56.7
Prupe.4G226700 Prunus persica HOM05D003466 ORTHO05D004102 1.3e-19 100.1 94 58.5
Prupe.6G162200 Prunus persica HOM05D003466 ORTHO05D004102 2.3e-19 99.4 94 58.5
CAN.G1076.6 Capsicum annuum HOM05D003466 ORTHO05D004102 2.9e-19 99.0 97 56.7
QL04p079025 Quercus lobata HOM05D003466 ORTHO05D004102 2.9e-19 99.0 97 56.7
Lj1g0005079 Lotus japonicus HOM05D003466 ORTHO05D004102 6.6e-19 97.8 96 59.4
SEGI_19842 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 1.9e-18 96.3 97 54.6
SEGI_30994 Sequoiadendron giganteum HOM05D003466 ORTHO05D004102 1.9e-18 96.3 97 54.6
Solyc01g100500.3 Solanum lycopersicum HOM05D003466 ORTHO05D004102 2.5e-18 95.9 97 55.7
Sopen01g044010 Solanum pennellii HOM05D003466 ORTHO05D004102 2.5e-18 95.9 97 55.7
MD01G1107400 Malus domestica HOM05D003466 ORTHO05D004102 3.3e-18 95.5 75 70.7
SMO364G0903 Selaginella moellendorffii HOM05D003466 ORTHO05D004102 7.2e-18 94.4 91 54.9
Sc10g0003130 Simmondsia chinensis HOM05D003466 ORTHO05D004102 1.6e-17 93.2 52 84.6
DCAR_012262 Daucus carota HOM05D003466 ORTHO05D004102 2.8e-17 92.4 94 57.4
Nitab4.5_0000368g0060 Nicotiana tabacum HOM05D003466 ORTHO05D004102 2.8e-17 92.4 94 55.3
PGSC0003DMG400002770 Solanum tuberosum HOM05D003466 ORTHO05D004102 4.7e-17 91.7 97 53.6
PSO063G0954 Papaver somniferum HOM05D003466 ORTHO05D004102 6.1e-17 91.3 99 54.5
PSO339G1378 Papaver somniferum HOM05D003466 ORTHO05D004102 6.1e-17 91.3 99 54.5
AagrBONN_evm.TU.Sc2ySwM_362.1620 Anthoceros agrestis HOM05D003466 ORTHO05D004102 1.8e-16 89.7 96 52.1
Thhalv10023093m.g Eutrema salsugineum HOM05D003466 ORTHO05D004102 2.3e-16 89.4 94 50.0
Pp3c6_19380 Physcomitrium patens HOM05D003466 ORTHO05D004102 4.4e-15 85.1 96 49.0
COL.COLO4_28634 Corchorus olitorius HOM05D003466 ORTHO05D004102 5.7e-15 84.7 52 78.8
Mapoly0065s0046 Marchantia polymorpha HOM05D003466 ORTHO05D004102 5.7e-15 84.7 93 51.6
EL10Ac2g02698 Beta vulgaris HOM05D003466 ORTHO05D004102 7.5e-15 84.3 95 53.7
Oeu012666.1 Olea europaea HOM05D003466 ORTHO05D004102 8.3e-14 80.9 94 56.4
FAN15G3298 Fragaria x ananassa HOM05D003466 ORTHO05D004102 7.0e-13 77.8 52 78.8
COL.COLO4_29543 Corchorus olitorius HOM05D003466 ORTHO05D004102 4.3e-10 68.6 98 48.0
MCO04G495 Micromonas commoda HOM05D003466 ORTHO05D004102 7.3e-10 67.8 97 42.3
Cre05.g232950 Chlamydomonas reinhardtii HOM05D003466 ORTHO05D004102 1.2e-09 67.0 78 48.7
COL.COLO4_23028 Corchorus olitorius HOM05D003466 ORTHO05D004102 2.1e-09 66.2 96 49.0
AUR62042249 Chenopodium quinoa HOM05D003466 ORTHO05D004102 3.1e-08 62.4 93 40.9
PRCOL_00005274 Prasinoderma coloniale HOM05D003466 ORTHO05D004102 4.0e-08 62.0 98 41.8


User provided reference genes

Program Settings