Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr1.140 Acer truncatum HOM05D005437 ORTHO05D003034 4.8e-63 244.2 112 100.0
GSVIVG01020355001 Vitis vinifera HOM05D005437 ORTHO05D006699 2.7e-10 68.9 36 83.3
ATR0763G170 Amborella trichopoda HOM05D005437 ORTHO05D006699 1.0e-09 67.0 45 71.1
Atru.chr1.169 Acer truncatum HOM05D005437 ORTHO05D006699 6.8e-09 64.3 34 88.2
Atru.chr1.178 Acer truncatum HOM05D005437 ORTHO05D006699 6.8e-09 64.3 34 88.2
MELO3C019659.2 Cucumis melo HOM05D005437 ORTHO05D006699 6.8e-09 64.3 52 57.7
Gohir.D01G027500 Gossypium hirsutum HOM05D005437 ORTHO05D006699 6.8e-09 64.3 34 85.3
Gorai.002G036800 Gossypium raimondii HOM05D005437 ORTHO05D006699 6.8e-09 64.3 34 85.3
CsaV3_6G013680 Cucumis sativus L. HOM05D005437 ORTHO05D006699 1.5e-08 63.2 60 53.3
Hma1.2p1_0637F.1_g193450 Hydrangea macrophylla HOM05D005437 ORTHO05D006699 1.5e-08 63.2 34 82.4
Manes.06G173000 Manihot esculenta HOM05D005437 ORTHO05D006699 2.0e-08 62.8 34 82.4
Gohir.A01G039700 Gossypium hirsutum HOM05D005437 ORTHO05D006699 2.6e-08 62.4 34 82.4
Nn7g37998 Nelumbo nucifera HOM05D005437 ORTHO05D006699 2.6e-08 62.4 34 76.5
Cc05_g16200 Coffea canephora HOM05D005437 ORTHO05D006699 3.4e-08 62.0 34 79.4
RcHm_v2.0_Chr5g0026221 Rosa chinensis HOM05D005437 ORTHO05D006699 3.4e-08 62.0 34 79.4
Aqoxy1G01551_Aqoxy1G01552 Aquilegia oxysepala HOM05D005437 ORTHO05D006699 4.4e-08 61.6 32 84.4
CDE02G3212 Ceratophyllum demersum HOM05D005437 ORTHO05D006699 5.7e-08 61.2 34 73.5
COL.COLO4_36739 Corchorus olitorius HOM05D005437 ORTHO05D006699 5.7e-08 61.2 34 82.4
AUR62011473 Chenopodium quinoa HOM05D005437 ORTHO05D006699 7.5e-08 60.8 34 79.4
VMungo1127G0204 Vigna mungo HOM05D005437 ORTHO05D006699 7.5e-08 60.8 34 82.4
arahy.Tifrunner.gnm1.ann1.49XUJ3 Arachis hypogaea HOM05D005437 ORTHO05D006699 9.8e-08 60.5 34 79.4
Ciclev10004324m.g Citrus clementina HOM05D005437 ORTHO05D006699 9.8e-08 60.5 34 82.4
Glyma.09G002300 Glycine max HOM05D005437 ORTHO05D006699 9.8e-08 60.5 34 79.4
MD05G1221200 Malus domestica HOM05D005437 ORTHO05D006699 9.8e-08 60.5 34 79.4
THA.LOC104812356 Tarenaya hassleriana HOM05D005437 ORTHO05D006699 9.8e-08 60.5 32 84.4
EL10Ac9g21866 Beta vulgaris HOM05D005437 ORTHO05D006699 1.3e-07 60.1 34 79.4
DCAR_009644 Daucus carota HOM05D005437 ORTHO05D006699 1.3e-07 60.1 34 82.4
Duzib213G0844 Durio zibethinus HOM05D005437 ORTHO05D006699 1.3e-07 60.1 34 76.5
FvH4_3g15600 Fragaria vesca HOM05D005437 ORTHO05D006699 1.3e-07 60.1 34 79.4
FAN11G3430 Fragaria x ananassa HOM05D005437 ORTHO05D006699 1.3e-07 60.1 34 79.4
FAN16G0636 Fragaria x ananassa HOM05D005437 ORTHO05D006699 1.3e-07 60.1 34 79.4
FAN21G1213 Fragaria x ananassa HOM05D005437 ORTHO05D006699 1.3e-07 60.1 34 79.4
FAN25G2633 Fragaria x ananassa HOM05D005437 ORTHO05D006699 1.3e-07 60.1 34 79.4
Lalb_Chr01g0008201 Lupinus albus HOM05D005437 ORTHO05D006699 1.3e-07 60.1 34 76.5
Actinidia12783 Actinidia chinensis HOM05D005437 ORTHO05D006699 1.7e-07 59.7 34 79.4
arahy.Tifrunner.gnm1.ann1.K3W397 Arachis hypogaea HOM05D005437 ORTHO05D006699 1.7e-07 59.7 34 79.4
Dinv19612 Davidia involucrata HOM05D005437 ORTHO05D006699 1.7e-07 59.7 34 79.4
Nitab4.5_0002321g0070 Nicotiana tabacum HOM05D005437 ORTHO05D006699 1.7e-07 59.7 37 75.7
Phvul.011G216100 Phaseolus vulgaris HOM05D005437 ORTHO05D006699 1.7e-07 59.7 34 79.4
CAN.G943.42 Capsicum annuum HOM05D005437 ORTHO05D006699 2.2e-07 59.3 34 76.5
Prupe.4G138400 Prunus persica HOM05D005437 ORTHO05D006699 2.2e-07 59.3 34 79.4
Sed0015468 Sechium edule HOM05D005437 ORTHO05D006699 2.2e-07 59.3 52 55.8
SMO144G0105 Selaginella moellendorffii HOM05D005437 ORTHO05D006699 2.2e-07 59.3 34 76.5
TWI39G0192 Tripterygium wilfordii HOM05D005437 ORTHO05D006699 2.2e-07 59.3 34 76.5
vmacro11674 Vaccinium macrocarpon HOM05D005437 ORTHO05D006699 2.2e-07 59.3 34 79.4
Lj8A189G30 Lonicera japonica HOM05D005437 ORTHO05D006699 2.8e-07 58.9 34 79.4
SHI21421 Sapria himalayana HOM05D005377 ORTHO05D003034 2.8e-07 58.9 34 82.4
Sc20g0003070 Simmondsia chinensis HOM05D005437 ORTHO05D006699 2.8e-07 58.9 34 79.4
Thecc.07G149800 Theobroma cacao HOM05D005437 ORTHO05D006699 2.8e-07 58.9 34 79.4
CSS0042223 Camellia sinensis var. sinensis HOM05D005437 ORTHO05D006699 3.7e-07 58.5 34 73.5
Migut.M01548 Erythranthe guttata HOM05D005437 ORTHO05D006699 3.7e-07 58.5 34 82.4
PSO675G2460 Papaver somniferum HOM05D005437 ORTHO05D006699 3.7e-07 58.5 34 73.5
SalBow1G2829 Salvia bowleyana HOM05D005437 ORTHO05D006699 3.7e-07 58.5 37 75.7
SalBow2G0599 Salvia bowleyana HOM05D005437 ORTHO05D006699 3.7e-07 58.5 37 75.7
SalBow8G5394 Salvia bowleyana HOM05D005437 ORTHO05D006699 3.7e-07 58.5 37 75.7
AL6G51080 Arabidopsis lyrata HOM05D005437 ORTHO05D006699 4.8e-07 58.2 32 84.4
Lj3g0019331 Lotus japonicus HOM05D005437 ORTHO05D006699 4.8e-07 58.2 32 78.1
QL04p076801 Quercus lobata HOM05D005437 ORTHO05D006699 4.8e-07 58.2 34 76.5
AT1G16540 Arabidopsis thaliana HOM05D005437 ORTHO05D006699 6.3e-07 57.8 32 81.2
CARHR017020 Cardamine hirsuta HOM05D005437 ORTHO05D006699 6.3e-07 57.8 32 81.2
AUR62016581 Chenopodium quinoa HOM05D005437 ORTHO05D006699 6.3e-07 57.8 34 76.5
Rhsim06G0239800 Rhododendron simsii HOM05D005437 ORTHO05D006699 6.3e-07 57.8 34 73.5
TAR626G0611 Trochodendron aralioides HOM05D005437 ORTHO05D006699 6.3e-07 57.8 34 73.5
Carub.0001s1630 Capsella rubella HOM05D005437 ORTHO05D006699 8.3e-07 57.4 32 81.2
Ca_19805_v3 Cicer arietinum L. HOM05D005437 ORTHO05D006699 8.3e-07 57.4 34 76.5
Medtr4g030930 Medicago truncatula HOM05D005437 ORTHO05D006699 8.3e-07 57.4 34 76.5
Psat7g228480 Pisum sativum HOM05D005437 ORTHO05D006699 8.3e-07 57.4 34 76.5
SalBow8G2468 Salvia bowleyana HOM05D005437 ORTHO05D006699 8.3e-07 57.4 37 73.0
Sopen07g034660 Solanum pennellii HOM05D005437 ORTHO05D006699 8.3e-07 57.4 34 73.5
A06p12540 Brassica napus HOM05D005437 ORTHO05D006699 1.1e-06 57.0 32 78.1
C05p14850 Brassica napus HOM05D005437 ORTHO05D006699 1.1e-06 57.0 32 78.1
BolC5t30200H Brassica oleracea HOM05D005437 ORTHO05D006699 1.1e-06 57.0 32 78.1
BraA06t24417Z Brassica rapa HOM05D005437 ORTHO05D006699 1.1e-06 57.0 32 78.1
Thhalv10006808m.g Eutrema salsugineum HOM05D005437 ORTHO05D006699 1.1e-06 57.0 32 81.2
Peaxi162Scf00452g00721 Petunia axillaris HOM05D005437 ORTHO05D006699 1.1e-06 57.0 34 76.5
Sp1g14710 Schrenkiella parvula HOM05D005437 ORTHO05D006699 1.1e-06 57.0 32 81.2
TPR.G34170 Trifolium pratense HOM05D005437 ORTHO05D006699 1.1e-06 57.0 34 73.5
Aa31LG7G1090 Aethionema arabicum HOM05D005437 ORTHO05D006699 1.4e-06 56.6 32 78.1
AL1G28710 Arabidopsis lyrata HOM05D005437 ORTHO05D006699 1.4e-06 56.6 32 81.2
Lsat_1_v5_gn_7_111601 Lactuca sativa HOM05D005437 ORTHO05D006699 1.4e-06 56.6 34 70.6
Nitab4.5_0001080g0010 Nicotiana tabacum HOM05D005437 ORTHO05D006699 1.4e-06 56.6 37 73.0
Oeu036617.1 Olea europaea HOM05D005437 ORTHO05D006699 1.4e-06 56.6 34 76.5
HPP92_026356 Vanilla planifolia HOM05D005437 ORTHO05D006699 1.4e-06 56.6 34 73.5
AagrBONN_evm.TU.Sc2ySwM_344.1621 Anthoceros agrestis HOM05D005437 ORTHO05D006699 1.8e-06 56.2 34 67.6
Os06g0670000 Oryza sativa ssp. japonica HOM05D005437 ORTHO05D006699 3.1e-06 55.5 34 73.5
PGSC0003DMG400022125 Solanum tuberosum HOM05D005437 ORTHO05D006699 3.1e-06 55.5 34 73.5
Zm00001eb389990 Zea mays HOM05D005437 ORTHO05D006699 3.1e-06 55.5 34 73.5
CiPaw.11G065200 Carya illinoinensis HOM05D005437 ORTHO05D006699 4.1e-06 55.1 34 76.5
Pp3c5_23340 Physcomitrium patens HOM05D005437 ORTHO05D006699 4.1e-06 55.1 54 50.0
Solyc07g066480.3 Solanum lycopersicum HOM05D005437 ORTHO05D006699 4.1e-06 55.1 34 70.6
CANSAT80G2640 Cannabis sativa HOM05D005437 ORTHO05D006699 5.4e-06 54.7 34 73.5
HanXRQChr11g0335011 Helianthus annuus HOM05D005437 ORTHO05D006699 5.4e-06 54.7 34 70.6
PGR102G1747 Punica granatum HOM05D005437 ORTHO05D006699 7.0e-06 54.3 38 65.8
SEGI_23870 Sequoiadendron giganteum HOM05D005437 ORTHO05D006699 7.0e-06 54.3 34 70.6
Mapoly0055s0057 Marchantia polymorpha HOM05D005437 ORTHO05D006699 9.1e-06 53.9 34 64.7


User provided reference genes

Program Settings